data_7TUJ # _entry.id 7TUJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7TUJ pdb_00007tuj 10.2210/pdb7tuj/pdb WWPDB D_1000262897 ? ? BMRB 30986 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '6VWB contains the N-terminal helix-hairpin-helix domain of MUS81, which directly interacts with the MUS81-binding region of SLX4' 6VWB unspecified BMRB 'NMR solution structure of the phosphorylated MUS81-binding region from human SLX4' 30986 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7TUJ _pdbx_database_status.recvd_initial_deposition_date 2022-02-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Payliss, B.J.' 1 0000-0003-1929-1365 'Reichheld, S.E.' 2 0000-0002-6979-5695 'Lemak, A.' 3 ? 'Arrowsmith, C.H.' 4 0000-0002-4971-3250 'Sharpe, S.' 5 ? 'Wyatt, H.D.M.' 6 0000-0001-9995-1057 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 41 _citation.language ? _citation.page_first 111537 _citation.page_last 111537 _citation.title 'Phosphorylation of the DNA repair scaffold SLX4 drives folding of the SAP domain and activation of the MUS81-EME1 endonuclease.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2022.111537 _citation.pdbx_database_id_PubMed 36288699 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Payliss, B.J.' 1 ? primary 'Tse, Y.W.E.' 2 ? primary 'Reichheld, S.E.' 3 ? primary 'Lemak, A.' 4 ? primary 'Yun, H.Y.' 5 ? primary 'Houliston, S.' 6 ? primary 'Patel, A.' 7 ? primary 'Arrowsmith, C.H.' 8 ? primary 'Sharpe, S.' 9 ? primary 'Wyatt, H.D.M.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Structure-specific endonuclease subunit SLX4' _entity.formula_weight 9956.198 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BTB/POZ domain-containing protein 12' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AQMPSAGGAQKPEGLE(TPO)PKGANRKKNLPPKVPI(TPO)PMPQYSIME(TPO)PVLKKELDRFGVRPLPKRQMVLKL KEIFQYTHQTLDSDSEDE ; _entity_poly.pdbx_seq_one_letter_code_can ;AQMPSAGGAQKPEGLETPKGANRKKNLPPKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLD SDSEDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLN n 1 3 MET n 1 4 PRO n 1 5 SER n 1 6 ALA n 1 7 GLY n 1 8 GLY n 1 9 ALA n 1 10 GLN n 1 11 LYS n 1 12 PRO n 1 13 GLU n 1 14 GLY n 1 15 LEU n 1 16 GLU n 1 17 TPO n 1 18 PRO n 1 19 LYS n 1 20 GLY n 1 21 ALA n 1 22 ASN n 1 23 ARG n 1 24 LYS n 1 25 LYS n 1 26 ASN n 1 27 LEU n 1 28 PRO n 1 29 PRO n 1 30 LYS n 1 31 VAL n 1 32 PRO n 1 33 ILE n 1 34 TPO n 1 35 PRO n 1 36 MET n 1 37 PRO n 1 38 GLN n 1 39 TYR n 1 40 SER n 1 41 ILE n 1 42 MET n 1 43 GLU n 1 44 TPO n 1 45 PRO n 1 46 VAL n 1 47 LEU n 1 48 LYS n 1 49 LYS n 1 50 GLU n 1 51 LEU n 1 52 ASP n 1 53 ARG n 1 54 PHE n 1 55 GLY n 1 56 VAL n 1 57 ARG n 1 58 PRO n 1 59 LEU n 1 60 PRO n 1 61 LYS n 1 62 ARG n 1 63 GLN n 1 64 MET n 1 65 VAL n 1 66 LEU n 1 67 LYS n 1 68 LEU n 1 69 LYS n 1 70 GLU n 1 71 ILE n 1 72 PHE n 1 73 GLN n 1 74 TYR n 1 75 THR n 1 76 HIS n 1 77 GLN n 1 78 THR n 1 79 LEU n 1 80 ASP n 1 81 SER n 1 82 ASP n 1 83 SER n 1 84 GLU n 1 85 ASP n 1 86 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 86 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SLX4, BTBD12, KIAA1784, KIAA1987' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SLX4_HUMAN _struct_ref.pdbx_db_accession Q8IY92 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQMPSAGGAQKPEGLETPKGANRKKNLPPKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLD SDSEDE ; _struct_ref.pdbx_align_begin 1528 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7TUJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IY92 _struct_ref_seq.db_align_beg 1528 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1613 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1528 _struct_ref_seq.pdbx_auth_seq_align_end 1613 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 4 1 1 '3D HN(CO)CA' 1 isotropic 5 1 1 '3D HNCO' 1 isotropic 6 1 1 '3D HNCA' 1 isotropic 9 1 1 '3D HNCACB' 1 isotropic 8 1 1 '3D HBHA(CO)NH' 1 isotropic 7 1 1 '3D HNHA' 1 isotropic 10 1 1 '3D 1H-15N TOCSY' 1 isotropic 13 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 12 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 11 1 1 '3D 1H-15N NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.125 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;500 uM [U-100% 13C; U-100% 15N] Phosphorylated MUS81-binding region of human SLX4, 25 mM sodium phosphate, 100 mM sodium chloride, 100 uM EDTA, 100 uM sodium azide, 93% H2O/7% D2O ; _pdbx_nmr_sample_details.solvent_system '93% H2O/7% D2O' _pdbx_nmr_sample_details.label 15N_13C_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ;Sample prepared by phosphorylation with recombinant CDK1/Cyclin B to selectively phosphorylate three TP sites: T1544, T1561, and T1571. Specificity and stoichiometric phosphorylation of these three sites were confirmed by mass spectrometry: LC-MS/MS and intact mass. ; # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7TUJ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7TUJ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7TUJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 2 'structure calculation' CYANA 2.1 'Guntert, Mumenthaler and Wuthrich' 3 'data analysis' FMCGUI ? 'Lemak and Arrowsmith' 4 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 5 'peak picking' NMRFAM-SPARKY ? 'Lee, Tonelli, and Markley' 6 'peak picking' 'CcpNmr Analysis' ? CCPN # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7TUJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7TUJ _struct.title 'NMR solution structure of the phosphorylated MUS81-binding region from human SLX4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7TUJ _struct_keywords.text 'SAP domain, disorder-to-order transition, protein binding' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 38 ? MET A 42 ? GLN A 1565 MET A 1569 5 ? 5 HELX_P HELX_P2 AA2 GLU A 43 ? PHE A 54 ? GLU A 1570 PHE A 1581 1 ? 12 HELX_P HELX_P3 AA3 PRO A 60 ? HIS A 76 ? PRO A 1587 HIS A 1603 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 16 C ? ? ? 1_555 A TPO 17 N ? ? A GLU 1543 A TPO 1544 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale2 covale both ? A TPO 17 C ? ? ? 1_555 A PRO 18 N ? ? A TPO 1544 A PRO 1545 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale3 covale both ? A ILE 33 C ? ? ? 1_555 A TPO 34 N ? ? A ILE 1560 A TPO 1561 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale4 covale both ? A TPO 34 C ? ? ? 1_555 A PRO 35 N ? ? A TPO 1561 A PRO 1562 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale5 covale both ? A GLU 43 C ? ? ? 1_555 A TPO 44 N ? ? A GLU 1570 A TPO 1571 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale6 covale both ? A TPO 44 C ? ? ? 1_555 A PRO 45 N ? ? A TPO 1571 A PRO 1572 1_555 ? ? ? ? ? ? ? 1.396 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7TUJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1528 1528 ALA ALA A . n A 1 2 GLN 2 1529 1529 GLN GLN A . n A 1 3 MET 3 1530 1530 MET MET A . n A 1 4 PRO 4 1531 1531 PRO PRO A . n A 1 5 SER 5 1532 1532 SER SER A . n A 1 6 ALA 6 1533 1533 ALA ALA A . n A 1 7 GLY 7 1534 1534 GLY GLY A . n A 1 8 GLY 8 1535 1535 GLY GLY A . n A 1 9 ALA 9 1536 1536 ALA ALA A . n A 1 10 GLN 10 1537 1537 GLN GLN A . n A 1 11 LYS 11 1538 1538 LYS LYS A . n A 1 12 PRO 12 1539 1539 PRO PRO A . n A 1 13 GLU 13 1540 1540 GLU GLU A . n A 1 14 GLY 14 1541 1541 GLY GLY A . n A 1 15 LEU 15 1542 1542 LEU LEU A . n A 1 16 GLU 16 1543 1543 GLU GLU A . n A 1 17 TPO 17 1544 1544 TPO TPO A . n A 1 18 PRO 18 1545 1545 PRO PRO A . n A 1 19 LYS 19 1546 1546 LYS LYS A . n A 1 20 GLY 20 1547 1547 GLY GLY A . n A 1 21 ALA 21 1548 1548 ALA ALA A . n A 1 22 ASN 22 1549 1549 ASN ASN A . n A 1 23 ARG 23 1550 1550 ARG ARG A . n A 1 24 LYS 24 1551 1551 LYS LYS A . n A 1 25 LYS 25 1552 1552 LYS LYS A . n A 1 26 ASN 26 1553 1553 ASN ASN A . n A 1 27 LEU 27 1554 1554 LEU LEU A . n A 1 28 PRO 28 1555 1555 PRO PRO A . n A 1 29 PRO 29 1556 1556 PRO PRO A . n A 1 30 LYS 30 1557 1557 LYS LYS A . n A 1 31 VAL 31 1558 1558 VAL VAL A . n A 1 32 PRO 32 1559 1559 PRO PRO A . n A 1 33 ILE 33 1560 1560 ILE ILE A . n A 1 34 TPO 34 1561 1561 TPO TPO A . n A 1 35 PRO 35 1562 1562 PRO PRO A . n A 1 36 MET 36 1563 1563 MET MET A . n A 1 37 PRO 37 1564 1564 PRO PRO A . n A 1 38 GLN 38 1565 1565 GLN GLN A . n A 1 39 TYR 39 1566 1566 TYR TYR A . n A 1 40 SER 40 1567 1567 SER SER A . n A 1 41 ILE 41 1568 1568 ILE ILE A . n A 1 42 MET 42 1569 1569 MET MET A . n A 1 43 GLU 43 1570 1570 GLU GLU A . n A 1 44 TPO 44 1571 1571 TPO TPO A . n A 1 45 PRO 45 1572 1572 PRO PRO A . n A 1 46 VAL 46 1573 1573 VAL VAL A . n A 1 47 LEU 47 1574 1574 LEU LEU A . n A 1 48 LYS 48 1575 1575 LYS LYS A . n A 1 49 LYS 49 1576 1576 LYS LYS A . n A 1 50 GLU 50 1577 1577 GLU GLU A . n A 1 51 LEU 51 1578 1578 LEU LEU A . n A 1 52 ASP 52 1579 1579 ASP ASP A . n A 1 53 ARG 53 1580 1580 ARG ARG A . n A 1 54 PHE 54 1581 1581 PHE PHE A . n A 1 55 GLY 55 1582 1582 GLY GLY A . n A 1 56 VAL 56 1583 1583 VAL VAL A . n A 1 57 ARG 57 1584 1584 ARG ARG A . n A 1 58 PRO 58 1585 1585 PRO PRO A . n A 1 59 LEU 59 1586 1586 LEU LEU A . n A 1 60 PRO 60 1587 1587 PRO PRO A . n A 1 61 LYS 61 1588 1588 LYS LYS A . n A 1 62 ARG 62 1589 1589 ARG ARG A . n A 1 63 GLN 63 1590 1590 GLN GLN A . n A 1 64 MET 64 1591 1591 MET MET A . n A 1 65 VAL 65 1592 1592 VAL VAL A . n A 1 66 LEU 66 1593 1593 LEU LEU A . n A 1 67 LYS 67 1594 1594 LYS LYS A . n A 1 68 LEU 68 1595 1595 LEU LEU A . n A 1 69 LYS 69 1596 1596 LYS LYS A . n A 1 70 GLU 70 1597 1597 GLU GLU A . n A 1 71 ILE 71 1598 1598 ILE ILE A . n A 1 72 PHE 72 1599 1599 PHE PHE A . n A 1 73 GLN 73 1600 1600 GLN GLN A . n A 1 74 TYR 74 1601 1601 TYR TYR A . n A 1 75 THR 75 1602 1602 THR THR A . n A 1 76 HIS 76 1603 1603 HIS HIS A . n A 1 77 GLN 77 1604 1604 GLN GLN A . n A 1 78 THR 78 1605 1605 THR THR A . n A 1 79 LEU 79 1606 1606 LEU LEU A . n A 1 80 ASP 80 1607 1607 ASP ASP A . n A 1 81 SER 81 1608 1608 SER SER A . n A 1 82 ASP 82 1609 1609 ASP ASP A . n A 1 83 SER 83 1610 1610 SER SER A . n A 1 84 GLU 84 1611 1611 GLU GLU A . n A 1 85 ASP 85 1612 1612 ASP ASP A . n A 1 86 GLU 86 1613 1613 GLU GLU A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email haley.wyatt@utoronto.ca _pdbx_contact_author.name_first Haley _pdbx_contact_author.name_last Wyatt _pdbx_contact_author.name_mi DM _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9995-1057 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TPO 17 A TPO 1544 ? THR 'modified residue' 2 A TPO 34 A TPO 1561 ? THR 'modified residue' 3 A TPO 44 A TPO 1571 ? THR 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-19 2 'Structure model' 1 1 2022-11-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_DOI' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # _pdbx_entry_details.entry_id 7TUJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Phosphorylated MUS81-binding region of human SLX4' 500 ? uM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate' 25 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 EDTA 100 ? uM 'natural abundance' 1 'sodium azide' 100 ? uM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 1536 ? ? 74.82 -50.36 2 1 LEU A 1542 ? ? -143.66 -46.54 3 1 GLU A 1543 ? ? -67.72 78.98 4 1 PRO A 1545 ? ? -59.76 106.96 5 1 LYS A 1546 ? ? -52.21 99.30 6 1 PRO A 1556 ? ? -64.01 99.21 7 1 LYS A 1557 ? ? -157.20 -82.46 8 1 GLN A 1604 ? ? -120.50 -53.08 9 1 THR A 1605 ? ? -110.43 -91.64 10 1 ASP A 1609 ? ? 70.95 -65.56 11 2 PRO A 1531 ? ? -63.89 89.64 12 2 PRO A 1545 ? ? -60.82 99.07 13 2 LEU A 1554 ? ? -53.01 107.12 14 2 PRO A 1556 ? ? -69.41 -168.56 15 2 LYS A 1557 ? ? -67.64 89.68 16 2 PRO A 1559 ? ? -83.62 32.87 17 2 MET A 1563 ? ? 51.62 74.00 18 2 PRO A 1585 ? ? -64.37 82.88 19 3 SER A 1532 ? ? -63.41 90.48 20 3 LYS A 1538 ? ? 60.61 71.69 21 3 LEU A 1542 ? ? -64.81 91.22 22 3 PRO A 1545 ? ? -55.97 102.26 23 3 PRO A 1556 ? ? -84.21 40.72 24 3 GLU A 1611 ? ? -160.42 22.17 25 4 LYS A 1538 ? ? 71.13 143.87 26 4 LYS A 1551 ? ? -137.23 -66.46 27 4 LYS A 1552 ? ? -174.66 -34.92 28 4 PRO A 1556 ? ? -65.30 81.92 29 4 LYS A 1557 ? ? -106.33 -72.59 30 4 TPO A 1561 ? ? -44.98 103.48 31 4 MET A 1563 ? ? -57.72 109.70 32 4 PRO A 1585 ? ? -66.47 82.02 33 4 GLN A 1604 ? ? -58.08 109.57 34 4 SER A 1608 ? ? -96.56 57.20 35 5 PRO A 1531 ? ? -66.19 89.46 36 5 ASN A 1553 ? ? -68.52 -166.52 37 5 PRO A 1556 ? ? -49.98 179.08 38 5 LYS A 1557 ? ? -61.87 99.51 39 5 PRO A 1564 ? ? -97.17 -154.65 40 5 HIS A 1603 ? ? 65.54 70.36 41 5 THR A 1605 ? ? -144.99 -69.93 42 5 LEU A 1606 ? ? -175.73 81.57 43 5 SER A 1610 ? ? 57.07 19.58 44 6 PRO A 1531 ? ? -49.39 107.15 45 6 ALA A 1548 ? ? 74.92 -53.55 46 6 ASN A 1549 ? ? -72.82 -156.26 47 6 LEU A 1554 ? ? 65.25 107.01 48 6 PRO A 1556 ? ? -85.48 37.89 49 6 VAL A 1558 ? ? 65.26 137.38 50 6 PRO A 1585 ? ? -57.03 85.56 51 6 SER A 1610 ? ? -84.59 -93.53 52 6 GLU A 1611 ? ? 174.17 126.65 53 7 PRO A 1531 ? ? -55.91 100.26 54 7 LYS A 1538 ? ? 59.84 89.25 55 7 PRO A 1539 ? ? -77.49 27.67 56 7 ALA A 1548 ? ? 71.85 -3.84 57 7 LYS A 1551 ? ? -156.35 -85.35 58 7 LEU A 1554 ? ? 59.68 88.86 59 7 PRO A 1585 ? ? -62.93 91.44 60 7 SER A 1608 ? ? -107.57 44.70 61 8 PRO A 1531 ? ? -65.86 87.91 62 8 SER A 1532 ? ? -155.30 36.72 63 8 ALA A 1533 ? ? 59.89 73.32 64 8 LYS A 1538 ? ? -155.65 67.89 65 8 ALA A 1548 ? ? -87.13 41.90 66 8 LYS A 1557 ? ? 62.58 73.25 67 8 MET A 1563 ? ? 49.56 71.05 68 8 GLN A 1565 ? ? -69.24 89.23 69 8 HIS A 1603 ? ? 67.57 -75.47 70 8 GLN A 1604 ? ? 42.20 -154.15 71 9 PRO A 1545 ? ? -69.05 90.52 72 9 LEU A 1554 ? ? 63.07 103.81 73 9 PRO A 1556 ? ? -71.98 -156.15 74 9 HIS A 1603 ? ? -160.45 117.63 75 9 SER A 1608 ? ? -88.65 46.58 76 9 ASP A 1609 ? ? 72.49 -57.10 77 10 PRO A 1539 ? ? -59.44 89.22 78 10 PRO A 1545 ? ? -54.57 94.94 79 10 ALA A 1548 ? ? 177.59 94.29 80 10 LYS A 1551 ? ? -66.03 86.12 81 10 ASN A 1553 ? ? 179.96 -168.60 82 10 PRO A 1559 ? ? -65.88 85.06 83 10 MET A 1563 ? ? -167.61 -50.65 84 10 PRO A 1564 ? ? -68.97 7.02 85 10 SER A 1608 ? ? -97.68 31.50 86 11 MET A 1530 ? ? 67.27 95.83 87 11 PRO A 1531 ? ? -50.07 102.32 88 11 SER A 1532 ? ? -65.93 87.86 89 11 ALA A 1533 ? ? -127.65 -60.80 90 11 PRO A 1545 ? ? -58.25 90.78 91 11 PRO A 1556 ? ? -69.33 3.45 92 11 MET A 1563 ? ? -152.85 70.86 93 11 PRO A 1564 ? ? -81.13 -78.21 94 11 SER A 1608 ? ? -114.64 59.06 95 11 ASP A 1609 ? ? 76.28 -52.58 96 11 SER A 1610 ? ? -53.35 106.13 97 12 PRO A 1539 ? ? -66.71 86.12 98 12 LYS A 1546 ? ? 58.59 82.63 99 12 ASN A 1553 ? ? -88.90 -157.75 100 12 PRO A 1559 ? ? -45.72 84.62 101 12 PRO A 1562 ? ? -61.49 -171.91 102 12 MET A 1563 ? ? 65.60 101.19 103 12 PRO A 1585 ? ? -69.12 80.17 104 13 PRO A 1531 ? ? -44.57 102.36 105 13 GLU A 1540 ? ? -64.79 90.83 106 13 LEU A 1542 ? ? -81.79 -86.61 107 13 LYS A 1551 ? ? -59.27 98.21 108 13 LEU A 1554 ? ? 43.73 77.93 109 13 VAL A 1558 ? ? 53.73 148.07 110 13 PRO A 1564 ? ? -78.10 41.01 111 13 PRO A 1585 ? ? -59.50 84.97 112 14 ALA A 1533 ? ? -66.56 96.44 113 14 PRO A 1539 ? ? -78.61 35.69 114 14 PRO A 1545 ? ? -55.79 -179.28 115 14 ALA A 1548 ? ? 64.49 -65.16 116 14 LEU A 1554 ? ? 64.59 87.36 117 14 LYS A 1557 ? ? -158.89 -59.74 118 14 PRO A 1564 ? ? -63.68 97.82 119 14 ASP A 1609 ? ? -56.59 83.80 120 14 SER A 1610 ? ? -140.80 35.80 121 15 GLN A 1529 ? ? 59.73 79.29 122 15 LYS A 1538 ? ? 72.76 96.82 123 15 ASN A 1553 ? ? -124.69 -168.65 124 15 PRO A 1556 ? ? -67.11 87.98 125 15 LYS A 1557 ? ? -130.86 -156.72 126 15 PRO A 1559 ? ? -51.24 99.99 127 16 PRO A 1531 ? ? -60.99 87.53 128 16 SER A 1532 ? ? -179.30 -178.67 129 16 GLU A 1543 ? ? 58.61 100.82 130 16 PRO A 1559 ? ? -79.61 40.17 131 16 PRO A 1562 ? ? -55.56 102.62 132 16 HIS A 1603 ? ? -53.69 92.83 133 16 SER A 1608 ? ? -108.90 46.40 134 17 PRO A 1531 ? ? -69.11 83.49 135 17 ALA A 1548 ? ? -94.84 53.28 136 17 PRO A 1559 ? ? -56.62 -5.51 137 17 MET A 1563 ? ? 177.00 -55.18 138 17 PRO A 1564 ? ? -59.41 92.57 139 17 PRO A 1585 ? ? -57.95 106.27 140 17 HIS A 1603 ? ? -61.22 87.29 141 18 GLN A 1537 ? ? -54.23 108.45 142 18 PRO A 1539 ? ? -68.77 -175.88 143 18 GLU A 1540 ? ? 78.98 -40.03 144 18 ASN A 1549 ? ? -166.03 69.07 145 18 ARG A 1550 ? ? -171.03 83.91 146 18 LYS A 1552 ? ? -175.59 -70.51 147 18 ASN A 1553 ? ? -165.26 -159.79 148 18 PRO A 1556 ? ? -80.70 44.69 149 18 VAL A 1558 ? ? 50.43 167.52 150 18 MET A 1563 ? ? 59.21 108.37 151 18 PRO A 1585 ? ? -66.44 85.68 152 18 HIS A 1603 ? ? -167.55 68.53 153 19 LYS A 1538 ? ? 55.72 78.40 154 19 LYS A 1546 ? ? 58.44 -81.80 155 19 ASN A 1549 ? ? -55.90 106.94 156 19 ARG A 1550 ? ? 78.79 -14.75 157 19 LEU A 1554 ? ? 61.02 88.58 158 19 PRO A 1556 ? ? -67.07 -167.44 159 19 PRO A 1562 ? ? -64.55 -137.35 160 19 MET A 1563 ? ? 64.80 78.11 161 19 HIS A 1603 ? ? 61.14 75.85 162 19 THR A 1605 ? ? -68.54 74.75 163 20 PRO A 1531 ? ? -62.33 98.78 164 20 PRO A 1545 ? ? -64.37 -172.42 165 20 ASN A 1553 ? ? -83.59 -157.17 166 20 PRO A 1556 ? ? -67.56 78.90 167 20 VAL A 1558 ? ? 53.77 172.42 168 20 MET A 1563 ? ? 58.28 89.33 169 20 PRO A 1564 ? ? -67.96 -82.02 170 20 GLN A 1565 ? ? -147.91 13.24 171 20 LEU A 1606 ? ? -86.42 -73.38 172 20 ASP A 1612 ? ? -97.18 44.02 # _pdbx_audit_support.funding_organization 'Canadian Institutes of Health Research (CIHR)' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number 156297 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id TPO _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id TPO _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR relaxation study' _pdbx_struct_assembly_auth_evidence.details 'T1/T2 method' #