HEADER TRANSFERASE 03-FEB-22 7TUR TITLE JOINT X-RAY/NEUTRON STRUCTURE OF ASPASTATE AMINOTRANSFERASE (AAT) IN TITLE 2 COMPLEX WITH PYRIDOXAMINE 5'-PHOSPHATE (PMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CASPAT,CYSTEINE AMINOTRANSFERASE,CYTOPLASMIC,CYSTEINE COMPND 5 TRANSAMINASE,CCAT,GLUTAMATE OXALOACETATE TRANSAMINASE 1,TRANSAMINASE COMPND 6 A; COMPND 7 EC: 2.6.1.1,2.6.1.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: GOT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT ENZYME, HOMODIMER, ASPARTATE AMINOTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR V.N.DRAGO,A.Y.KOVALEVSKY,S.DAJNOWICZ,T.C.MUESER REVDAT 2 25-OCT-23 7TUR 1 REMARK REVDAT 1 28-SEP-22 7TUR 0 JRNL AUTH V.N.DRAGO,S.DAJNOWICZ,J.M.PARKS,M.P.BLAKELEY,D.A.KEEN, JRNL AUTH 2 N.COQUELLE,K.L.WEISS,O.GERLITS,A.KOVALEVSKY,T.C.MUESER JRNL TITL AN N⋯H⋯N LOW-BARRIER HYDROGEN BOND PREORGANIZES JRNL TITL 2 THE CATALYTIC SITE OF ASPARTATE AMINOTRANSFERASE TO JRNL TITL 3 FACILITATE THE SECOND HALF-REACTION. JRNL REF CHEM SCI V. 13 10057 2022 JRNL REFN ISSN 2041-6520 JRNL PMID 36128223 JRNL DOI 10.1039/D2SC02285K REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ADAMS,M.MUSTYAKIMOV,P.V.AFONINE,P.LANGAN REMARK 1 TITL GENERALIZED X-RAY AND NEUTRON CRYSTALLOGRAPHIC ANALYSIS: REMARK 1 TITL 2 MORE ACCURATE AND COMPLETE STRUCTURES FOR BIOLOGICAL REMARK 1 TITL 3 MACROMOLECULES REMARK 1 REF ACTA CRYST. V. D65 567 2009 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NCNS 1.0.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,MUSTYAKIMOV, REMARK 3 : AFONINE,LANGAN REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 85754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4298 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6949 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 353 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 67.4 REMARK 3 NUMBER OF REFLECTIONS : 31861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2793 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96556 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, NCNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 7.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI III REMARK 230 WAVELENGTH OR RANGE (A) : 3.10-4.15 REMARK 230 MONOCHROMATOR : NONE REMARK 230 OPTICS : COLLIMATORS REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : MAATEL IMAGINE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : XDS, LAUEGEN REMARK 230 DATA SCALING SOFTWARE : XDS, LSCALE REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 33902 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 230 RESOLUTION RANGE LOW (A) : 55.210 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 230 DATA REDUNDANCY : 5.400 REMARK 230 R MERGE (I) : 0.16100 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 7.5000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 230 COMPLETENESS FOR SHELL (%) : 61.6 REMARK 230 DATA REDUNDANCY IN SHELL : 4.30 REMARK 230 R MERGE FOR SHELL (I) : 0.30800 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 4.400 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : PHASER, NCNS REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM NAOAC (PH 5.4), 2 MM PLP, 9% REMARK 280 POLYETHYLENE GLYCOL (PEG) 6000, AND 10% GLYCEROL. THE CRYSTAL REMARK 280 SOAKED WITH 50 MM TRIS-HCL (PH 7.5), 5% PEG 6000, 5% GLYCEROL, REMARK 280 AND 300 MM L-CYSTEINESULFINATE IN D2O FOR 24 H, BATCH MODE, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.85500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.85500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O DOD B 4175 D1 DOD B 4307 1.44 REMARK 500 NZ LYS B 1258 DNA2 PMP B 4001 1.45 REMARK 500 D2 DOD B 4255 O DOD B 4302 1.48 REMARK 500 O DOD A 2241 D1 DOD A 2256 1.54 REMARK 500 OE2 GLU B 1314 D2 DOD B 4105 1.57 REMARK 500 DH TYR A 160 O THR A 198 1.57 REMARK 500 HH TYR A 160 O THR A 198 1.57 REMARK 500 OE1 GLU B 1008 D1 DOD B 4104 1.57 REMARK 500 O DOD B 4136 D1 DOD B 4242 1.57 REMARK 500 O DOD A 2205 D2 DOD A 2222 1.57 REMARK 500 OE2 GLU A 265 D1 DOD A 2105 1.58 REMARK 500 O DOD A 2237 D1 DOD A 2255 1.58 REMARK 500 O DOD B 4159 D1 DOD B 4196 1.58 REMARK 500 DE ARG B 1304 O DOD B 4103 1.58 REMARK 500 OD1 ASP A 154 D1 DOD A 2106 1.59 REMARK 500 ND2 ASN A 351 O DOD A 2101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 89.51 -61.02 REMARK 500 LEU A 16 -63.13 -28.13 REMARK 500 LEU A 35 43.02 -103.37 REMARK 500 VAL A 37 145.85 -31.41 REMARK 500 TYR A 160 -59.35 -140.72 REMARK 500 SER A 230 -18.70 -150.07 REMARK 500 SER A 296 -61.89 76.19 REMARK 500 ALA A 339 -70.34 -40.95 REMARK 500 LEU A 344 2.25 -65.36 REMARK 500 THR A 349 79.67 -110.68 REMARK 500 ILE A 353 -19.38 -47.15 REMARK 500 THR A 363 -81.86 -73.84 REMARK 500 LYS A 395 -80.71 -69.53 REMARK 500 ALA A 407 -73.38 -65.41 REMARK 500 VAL A 408 -33.91 -35.62 REMARK 500 ALA B1001 91.36 -164.20 REMARK 500 TYR B1160 -69.12 -141.44 REMARK 500 THR B1294 -62.80 -108.15 REMARK 500 SER B1296 -58.44 75.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TUR A 0 412 UNP P00503 AATC_PIG 1 413 DBREF 7TUR B 1000 1412 UNP P00503 AATC_PIG 1 413 SEQADV 7TUR GLY A -1 UNP P00503 EXPRESSION TAG SEQADV 7TUR ASN A 63 UNP P00503 ASP 64 CONFLICT SEQADV 7TUR GLN A 288 UNP P00503 GLU 289 CONFLICT SEQADV 7TUR GLN A 376 UNP P00503 GLU 377 CONFLICT SEQADV 7TUR GLY B 999 UNP P00503 EXPRESSION TAG SEQADV 7TUR ASN B 1063 UNP P00503 ASP 64 CONFLICT SEQADV 7TUR GLN B 1288 UNP P00503 GLU 289 CONFLICT SEQADV 7TUR GLN B 1376 UNP P00503 GLU 377 CONFLICT SEQRES 1 A 414 GLY MET ALA PRO PRO SER VAL PHE ALA GLU VAL PRO GLN SEQRES 2 A 414 ALA GLN PRO VAL LEU VAL PHE LYS LEU ILE ALA ASP PHE SEQRES 3 A 414 ARG GLU ASP PRO ASP PRO ARG LYS VAL ASN LEU GLY VAL SEQRES 4 A 414 GLY ALA TYR ARG THR ASP ASP CYS GLN PRO TRP VAL LEU SEQRES 5 A 414 PRO VAL VAL ARG LYS VAL GLU GLN ARG ILE ALA ASN ASN SEQRES 6 A 414 SER SER LEU ASN HIS GLU TYR LEU PRO ILE LEU GLY LEU SEQRES 7 A 414 ALA GLU PHE ARG THR CYS ALA SER ARG LEU ALA LEU GLY SEQRES 8 A 414 ASP ASP SER PRO ALA LEU GLN GLU LYS ARG VAL GLY GLY SEQRES 9 A 414 VAL GLN SER LEU GLY GLY THR GLY ALA LEU ARG ILE GLY SEQRES 10 A 414 ALA GLU PHE LEU ALA ARG TRP TYR ASN GLY THR ASN ASN SEQRES 11 A 414 LYS ASP THR PRO VAL TYR VAL SER SER PRO THR TRP GLU SEQRES 12 A 414 ASN HIS ASN GLY VAL PHE THR THR ALA GLY PHE LYS ASP SEQRES 13 A 414 ILE ARG SER TYR ARG TYR TRP ASP THR GLU LYS ARG GLY SEQRES 14 A 414 LEU ASP LEU GLN GLY PHE LEU SER ASP LEU GLU ASN ALA SEQRES 15 A 414 PRO GLU PHE SER ILE PHE VAL LEU HIS ALA CYS ALA HIS SEQRES 16 A 414 ASN PRO THR GLY THR ASP PRO THR PRO GLU GLN TRP LYS SEQRES 17 A 414 GLN ILE ALA SER VAL MET LYS ARG ARG PHE LEU PHE PRO SEQRES 18 A 414 PHE PHE ASP SER ALA TYR GLN GLY PHE ALA SER GLY ASN SEQRES 19 A 414 LEU GLU LYS ASP ALA TRP ALA ILE ARG TYR PHE VAL SER SEQRES 20 A 414 GLU GLY PHE GLU LEU PHE CYS ALA GLN SER PHE SER LYS SEQRES 21 A 414 ASN PHE GLY LEU TYR ASN GLU ARG VAL GLY ASN LEU THR SEQRES 22 A 414 VAL VAL ALA LYS GLU PRO ASP SER ILE LEU ARG VAL LEU SEQRES 23 A 414 SER GLN MET GLN LYS ILE VAL ARG VAL THR TRP SER ASN SEQRES 24 A 414 PRO PRO ALA GLN GLY ALA ARG ILE VAL ALA ARG THR LEU SEQRES 25 A 414 SER ASP PRO GLU LEU PHE HIS GLU TRP THR GLY ASN VAL SEQRES 26 A 414 LYS THR MET ALA ASP ARG ILE LEU SER MET ARG SER GLU SEQRES 27 A 414 LEU ARG ALA ARG LEU GLU ALA LEU LYS THR PRO GLY THR SEQRES 28 A 414 TRP ASN HIS ILE THR ASP GLN ILE GLY MET PHE SER PHE SEQRES 29 A 414 THR GLY LEU ASN PRO LYS GLN VAL GLU TYR LEU ILE ASN SEQRES 30 A 414 GLN LYS HIS ILE TYR LEU LEU PRO SER GLY ARG ILE ASN SEQRES 31 A 414 MET CYS GLY LEU THR THR LYS ASN LEU ASP TYR VAL ALA SEQRES 32 A 414 THR SER ILE HIS GLU ALA VAL THR LYS ILE GLN SEQRES 1 B 414 GLY MET ALA PRO PRO SER VAL PHE ALA GLU VAL PRO GLN SEQRES 2 B 414 ALA GLN PRO VAL LEU VAL PHE LYS LEU ILE ALA ASP PHE SEQRES 3 B 414 ARG GLU ASP PRO ASP PRO ARG LYS VAL ASN LEU GLY VAL SEQRES 4 B 414 GLY ALA TYR ARG THR ASP ASP CYS GLN PRO TRP VAL LEU SEQRES 5 B 414 PRO VAL VAL ARG LYS VAL GLU GLN ARG ILE ALA ASN ASN SEQRES 6 B 414 SER SER LEU ASN HIS GLU TYR LEU PRO ILE LEU GLY LEU SEQRES 7 B 414 ALA GLU PHE ARG THR CYS ALA SER ARG LEU ALA LEU GLY SEQRES 8 B 414 ASP ASP SER PRO ALA LEU GLN GLU LYS ARG VAL GLY GLY SEQRES 9 B 414 VAL GLN SER LEU GLY GLY THR GLY ALA LEU ARG ILE GLY SEQRES 10 B 414 ALA GLU PHE LEU ALA ARG TRP TYR ASN GLY THR ASN ASN SEQRES 11 B 414 LYS ASP THR PRO VAL TYR VAL SER SER PRO THR TRP GLU SEQRES 12 B 414 ASN HIS ASN GLY VAL PHE THR THR ALA GLY PHE LYS ASP SEQRES 13 B 414 ILE ARG SER TYR ARG TYR TRP ASP THR GLU LYS ARG GLY SEQRES 14 B 414 LEU ASP LEU GLN GLY PHE LEU SER ASP LEU GLU ASN ALA SEQRES 15 B 414 PRO GLU PHE SER ILE PHE VAL LEU HIS ALA CYS ALA HIS SEQRES 16 B 414 ASN PRO THR GLY THR ASP PRO THR PRO GLU GLN TRP LYS SEQRES 17 B 414 GLN ILE ALA SER VAL MET LYS ARG ARG PHE LEU PHE PRO SEQRES 18 B 414 PHE PHE ASP SER ALA TYR GLN GLY PHE ALA SER GLY ASN SEQRES 19 B 414 LEU GLU LYS ASP ALA TRP ALA ILE ARG TYR PHE VAL SER SEQRES 20 B 414 GLU GLY PHE GLU LEU PHE CYS ALA GLN SER PHE SER LYS SEQRES 21 B 414 ASN PHE GLY LEU TYR ASN GLU ARG VAL GLY ASN LEU THR SEQRES 22 B 414 VAL VAL ALA LYS GLU PRO ASP SER ILE LEU ARG VAL LEU SEQRES 23 B 414 SER GLN MET GLN LYS ILE VAL ARG VAL THR TRP SER ASN SEQRES 24 B 414 PRO PRO ALA GLN GLY ALA ARG ILE VAL ALA ARG THR LEU SEQRES 25 B 414 SER ASP PRO GLU LEU PHE HIS GLU TRP THR GLY ASN VAL SEQRES 26 B 414 LYS THR MET ALA ASP ARG ILE LEU SER MET ARG SER GLU SEQRES 27 B 414 LEU ARG ALA ARG LEU GLU ALA LEU LYS THR PRO GLY THR SEQRES 28 B 414 TRP ASN HIS ILE THR ASP GLN ILE GLY MET PHE SER PHE SEQRES 29 B 414 THR GLY LEU ASN PRO LYS GLN VAL GLU TYR LEU ILE ASN SEQRES 30 B 414 GLN LYS HIS ILE TYR LEU LEU PRO SER GLY ARG ILE ASN SEQRES 31 B 414 MET CYS GLY LEU THR THR LYS ASN LEU ASP TYR VAL ALA SEQRES 32 B 414 THR SER ILE HIS GLU ALA VAL THR LYS ILE GLN HET PLA A2001 43 HET PMP B4001 28 HETNAM PLA 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4- HETNAM 2 PLA YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETSYN PLA N-PYRIDOXYL-2-METHYLASPARTIC ACID-5-MONOPHOSPHATE HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 PLA C13 H19 N2 O9 P FORMUL 4 PMP C8 H13 N2 O5 P FORMUL 5 DOD *376(D2 O) HELIX 1 AA1 VAL A 15 ASP A 27 1 13 HELIX 2 AA2 LEU A 50 ASN A 62 1 13 HELIX 3 AA3 LEU A 76 GLY A 89 1 14 HELIX 4 AA4 SER A 92 GLU A 97 1 6 HELIX 5 AA5 GLY A 107 TYR A 123 1 17 HELIX 6 AA6 GLU A 141 GLY A 151 1 11 HELIX 7 AA7 ASP A 169 ASN A 179 1 11 HELIX 8 AA8 THR A 201 PHE A 216 1 16 HELIX 9 AA9 ASN A 232 ALA A 237 1 6 HELIX 10 AB1 ALA A 237 GLU A 246 1 10 HELIX 11 AB2 LEU A 262 GLU A 265 5 4 HELIX 12 AB3 GLU A 276 VAL A 293 1 18 HELIX 13 AB4 ALA A 300 ASP A 312 1 13 HELIX 14 AB5 ASP A 312 LEU A 344 1 33 HELIX 15 AB6 ASN A 351 ASP A 355 5 5 HELIX 16 AB7 ASN A 366 GLN A 376 1 11 HELIX 17 AB8 CYS A 390 LEU A 392 5 3 HELIX 18 AB9 ASN A 396 ILE A 411 1 16 HELIX 19 AC1 VAL B 1015 ASP B 1027 1 13 HELIX 20 AC2 LEU B 1050 ASN B 1062 1 13 HELIX 21 AC3 LEU B 1076 GLY B 1089 1 14 HELIX 22 AC4 SER B 1092 GLU B 1097 1 6 HELIX 23 AC5 GLY B 1107 TYR B 1123 1 17 HELIX 24 AC6 GLU B 1141 ALA B 1150 1 10 HELIX 25 AC7 ASP B 1169 ASN B 1179 1 11 HELIX 26 AC8 THR B 1201 ARG B 1215 1 15 HELIX 27 AC9 ASN B 1232 ALA B 1237 1 6 HELIX 28 AD1 ALA B 1237 GLU B 1246 1 10 HELIX 29 AD2 LEU B 1262 GLU B 1265 5 4 HELIX 30 AD3 GLU B 1276 VAL B 1293 1 18 HELIX 31 AD4 ALA B 1300 ASP B 1312 1 13 HELIX 32 AD5 ASP B 1312 LEU B 1344 1 33 HELIX 33 AD6 ASN B 1351 GLN B 1356 1 6 HELIX 34 AD7 ASN B 1366 GLN B 1376 1 11 HELIX 35 AD8 CYS B 1390 LEU B 1392 5 3 HELIX 36 AD9 ASN B 1396 ILE B 1411 1 16 SHEET 1 AA1 2 VAL A 33 ASN A 34 0 SHEET 2 AA1 2 ILE A 379 TYR A 380 1 O TYR A 380 N VAL A 33 SHEET 1 AA2 7 VAL A 100 LEU A 106 0 SHEET 2 AA2 7 VAL A 267 VAL A 273 -1 O VAL A 272 N GLY A 101 SHEET 3 AA2 7 LEU A 250 SER A 255 -1 N GLN A 254 O ASN A 269 SHEET 4 AA2 7 PHE A 218 SER A 223 1 N PHE A 221 O ALA A 253 SHEET 5 AA2 7 ILE A 185 HIS A 189 1 N LEU A 188 O ASP A 222 SHEET 6 AA2 7 VAL A 133 SER A 137 1 N TYR A 134 O ILE A 185 SHEET 7 AA2 7 ILE A 155 ARG A 159 1 O ARG A 156 N VAL A 133 SHEET 1 AA3 2 TRP A 161 ASP A 162 0 SHEET 2 AA3 2 GLY A 167 LEU A 168 -1 O GLY A 167 N ASP A 162 SHEET 1 AA4 2 PHE A 360 PHE A 362 0 SHEET 2 AA4 2 ARG A 386 ASN A 388 -1 O ILE A 387 N SER A 361 SHEET 1 AA5 2 VAL B1033 ASN B1034 0 SHEET 2 AA5 2 ILE B1379 TYR B1380 1 O TYR B1380 N VAL B1033 SHEET 1 AA6 7 VAL B1100 LEU B1106 0 SHEET 2 AA6 7 VAL B1267 VAL B1273 -1 O VAL B1272 N GLY B1101 SHEET 3 AA6 7 LEU B1250 SER B1255 -1 N GLN B1254 O ASN B1269 SHEET 4 AA6 7 PHE B1218 SER B1223 1 N PHE B1221 O ALA B1253 SHEET 5 AA6 7 ILE B1185 HIS B1189 1 N LEU B1188 O ASP B1222 SHEET 6 AA6 7 VAL B1133 SER B1137 1 N TYR B1134 O ILE B1185 SHEET 7 AA6 7 ILE B1155 ARG B1159 1 O ARG B1156 N VAL B1133 SHEET 1 AA7 2 TRP B1161 ASP B1162 0 SHEET 2 AA7 2 GLY B1167 LEU B1168 -1 O GLY B1167 N ASP B1162 SHEET 1 AA8 2 PHE B1360 PHE B1362 0 SHEET 2 AA8 2 ARG B1386 ASN B1388 -1 O ILE B1387 N SER B1361 CISPEP 1 SER A 137 PRO A 138 0 -0.74 CISPEP 2 ASN A 194 PRO A 195 0 4.06 CISPEP 3 SER B 1137 PRO B 1138 0 1.24 CISPEP 4 ASN B 1194 PRO B 1195 0 5.21 CRYST1 55.710 125.030 130.900 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007639 0.00000