HEADER HYDROLASE/RNA 03-FEB-22 7TUV TITLE CRYSTAL STRUCTURE OF THE EXORIBONUCLEOLYTIC MODULE OF T. BRUCEI RRP44 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE RRP44; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (5'-R(P*GP*GP*UP*U)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: RRP44; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS RIBONUCLEASE, RNASEII FAMILY, HYDROLASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.CESARO,B.G.GUIMARAES REVDAT 3 03-APR-24 7TUV 1 REMARK REVDAT 2 01-FEB-23 7TUV 1 JRNL REVDAT 1 11-JAN-23 7TUV 0 JRNL AUTH G.CESARO,H.T.DA SOLER,E.P.GUERRA-SLOMPO,A.HAOUZ,P.LEGRAND, JRNL AUTH 2 N.I.T.ZANCHIN,B.G.GUIMARAES JRNL TITL TRYPANOSOMA BRUCEI RRP44: A VERSATILE ENZYME FOR PROCESSING JRNL TITL 2 STRUCTURED AND NON-STRUCTURED RNA SUBSTRATES. JRNL REF NUCLEIC ACIDS RES. V. 51 380 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36583334 JRNL DOI 10.1093/NAR/GKAC1199 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 55.0 REMARK 3 NUMBER OF REFLECTIONS : 24678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2712 REMARK 3 BIN FREE R VALUE : 0.3757 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 23 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5331 REMARK 3 NUCLEIC ACID ATOMS : 86 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.22730 REMARK 3 B22 (A**2) : -9.55860 REMARK 3 B33 (A**2) : 4.33120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.264 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.345 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.910 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.344 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5554 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7540 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1934 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 951 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5554 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 718 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4407 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.08 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 29.5012 -9.2357 21.9302 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: -0.2148 REMARK 3 T33: -0.0609 T12: -0.0587 REMARK 3 T13: 0.0344 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.8346 L22: 1.0256 REMARK 3 L33: 0.7124 L12: -0.2702 REMARK 3 L13: 0.2362 L23: -0.1465 REMARK 3 S TENSOR REMARK 3 S11: -0.084 S12: -0.1232 S13: 0.0212 REMARK 3 S21: -0.1232 S22: 0.0091 S23: -0.0158 REMARK 3 S31: 0.0212 S32: -0.0158 S33: 0.0749 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.225 REMARK 200 RESOLUTION RANGE LOW (A) : 77.632 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 24.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 20000, 0.1 M MES PH 6.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.14800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.15250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.55650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.15250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.14800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.55650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 230 REMARK 465 GLY A 231 REMARK 465 ALA A 232 REMARK 465 ARG A 233 REMARK 465 GLY A 315 REMARK 465 ALA A 316 REMARK 465 LYS A 317 REMARK 465 PRO A 318 REMARK 465 THR A 319 REMARK 465 GLU A 320 REMARK 465 GLU A 321 REMARK 465 MET A 322 REMARK 465 ASN A 323 REMARK 465 ASP A 324 REMARK 465 THR A 325 REMARK 465 GLY A 326 REMARK 465 ALA A 327 REMARK 465 GLY A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 ASP A 331 REMARK 465 HIS A 332 REMARK 465 GLU A 333 REMARK 465 ASN A 334 REMARK 465 SER A 335 REMARK 465 GLY A 336 REMARK 465 ARG A 337 REMARK 465 GLU A 338 REMARK 465 GLY A 339 REMARK 465 ILE A 340 REMARK 465 GLY A 341 REMARK 465 ASP A 384 REMARK 465 THR A 385 REMARK 465 LEU A 386 REMARK 465 ASP A 387 REMARK 465 THR A 388 REMARK 465 ALA A 830 REMARK 465 GLN A 926 REMARK 465 ARG A 927 REMARK 465 GLY A 928 REMARK 465 ASP A 929 REMARK 465 VAL A 930 REMARK 465 LEU A 931 REMARK 465 ARG A 932 REMARK 465 CYS A 946 REMARK 465 GLU A 947 REMARK 465 ASP A 948 REMARK 465 VAL A 949 REMARK 465 SER A 950 REMARK 465 GLU A 951 REMARK 465 PRO A 952 REMARK 465 VAL A 953 REMARK 465 ALA A 954 REMARK 465 ILE A 955 REMARK 465 ALA A 956 REMARK 465 GLY A 957 REMARK 465 GLU A 958 REMARK 465 GLU A 959 REMARK 465 LEU A 960 REMARK 465 PRO A 961 REMARK 465 LEU A 962 REMARK 465 LYS A 963 REMARK 465 ARG A 964 REMARK 465 GLN A 965 REMARK 465 ARG A 966 REMARK 465 LEU A 967 REMARK 465 GLU A 968 REMARK 465 HIS A 969 REMARK 465 HIS A 970 REMARK 465 HIS A 971 REMARK 465 HIS A 972 REMARK 465 HIS A 973 REMARK 465 HIS A 974 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 267 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 313 CG CD1 CD2 REMARK 470 ARG A 314 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 LEU A 389 CG CD1 CD2 REMARK 470 GLU A 728 CG CD OE1 OE2 REMARK 470 ARG A 731 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1307 O HOH A 1340 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 2 OP1 - P - OP2 ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 267 54.97 -110.11 REMARK 500 ASN A 292 59.00 32.87 REMARK 500 ARG A 351 31.33 -93.58 REMARK 500 ASN A 366 45.88 -84.05 REMARK 500 ARG A 367 112.90 -39.74 REMARK 500 SER A 551 -27.78 68.96 REMARK 500 ASN A 571 -80.24 -129.90 REMARK 500 ARG A 607 88.26 -152.96 REMARK 500 PHE A 706 71.61 -119.40 REMARK 500 TRP A 709 30.50 -158.13 REMARK 500 ASN A 872 8.37 56.67 REMARK 500 LEU A 942 -7.12 84.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 503 OD1 REMARK 620 2 U B 5 O3' 74.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 511 OD2 REMARK 620 2 U5P A1001 O2P 58.0 REMARK 620 3 HOH A1102 O 126.0 159.6 REMARK 620 N 1 2 DBREF 7TUV A 232 968 UNP Q95Z12 Q95Z12_9TRYP 232 968 DBREF 7TUV B 2 5 PDB 7TUV 7TUV 2 5 SEQADV 7TUV MET A 230 UNP Q95Z12 INITIATING METHIONINE SEQADV 7TUV GLY A 231 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV LYS A 853 UNP Q95Z12 ARG 853 CONFLICT SEQADV 7TUV HIS A 969 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV HIS A 970 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV HIS A 971 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV HIS A 972 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV HIS A 973 UNP Q95Z12 EXPRESSION TAG SEQADV 7TUV HIS A 974 UNP Q95Z12 EXPRESSION TAG SEQRES 1 A 745 MET GLY ALA ARG ALA LEU PHE SER PRO HIS LEU ALA GLU SEQRES 2 A 745 SER ALA LEU ASP LEU GLY VAL GLN ASN GLY THR TYR LEU SEQRES 3 A 745 ARG GLY LYS LEU ARG VAL SER GLU THR ASN CYS PHE PHE SEQRES 4 A 745 GLY GLU ILE ARG GLY GLN TRP LYS GLY HIS ASN PHE GLU SEQRES 5 A 745 ARG VAL LEU LEU PRO GLY ARG THR ASN LEU ASN ARG ALA SEQRES 6 A 745 ILE HIS GLY ASP ILE VAL THR VAL GLU LEU LEU PRO VAL SEQRES 7 A 745 ALA SER TRP ARG PRO LEU ARG GLY ALA LYS PRO THR GLU SEQRES 8 A 745 GLU MET ASN ASP THR GLY ALA GLY GLY ASP ASP HIS GLU SEQRES 9 A 745 ASN SER GLY ARG GLU GLY ILE GLY GLU GLU SER GLU GLY SEQRES 10 A 745 ALA ALA LEU ALA ARG GLY TYR THR PRO VAL GLY ARG VAL SEQRES 11 A 745 VAL GLY ILE THR THR MET ASN ARG ARG PRO PHE CYS GLY SEQRES 12 A 745 SER ILE ASP VAL GLU GLU LEU ASN LYS LEU ALA ASP THR SEQRES 13 A 745 LEU ASP THR LEU THR GLY THR VAL SER VAL LEU PHE GLN SEQRES 14 A 745 PRO LYS ASP ASN ARG ILE PRO ARG ILE ARG ILE THR THR SEQRES 15 A 745 ALA HIS LEU GLY ASP LEU LYS ASP LYS ARG LEU SER VAL SEQRES 16 A 745 ILE ILE ASP ASP TRP GLY GLU HIS SER SER PHE PRO VAL SEQRES 17 A 745 GLY HIS TYR VAL GLU VAL LEU GLY THR ILE GLY ASP LYS SEQRES 18 A 745 ASP THR GLU ALA LYS VAL ILE LEU LEU GLU ASN ASP ILE SEQRES 19 A 745 PRO HIS TYR ASP PHE SER GLU ALA VAL TYR ASP CYS LEU SEQRES 20 A 745 PRO LYS GLY GLU TRP ASN VAL THR GLU GLU GLU LEU GLY SEQRES 21 A 745 ASN ARG LEU ASP LEU ARG ASP LEU CYS VAL VAL SER VAL SEQRES 22 A 745 ASP PRO LEU GLY CYS ARG ASP ILE ASP ASP ALA LEU HIS SEQRES 23 A 745 CYS ARG ARG VAL ASN GLY ASN HIS LEU GLU VAL GLY VAL SEQRES 24 A 745 HIS ILE ALA ASP VAL THR HIS PHE LEU LYS GLU GLY THR SEQRES 25 A 745 ALA MET ASP GLU GLU ALA ALA LYS ARG SER THR SER VAL SEQRES 26 A 745 TYR LEU VAL ASP ARG ARG ILE ASN MET LEU PRO GLN LEU SEQRES 27 A 745 LEU THR GLU ASN LEU CYS SER ILE VAL ALA ASP GLU ASP SEQRES 28 A 745 ARG TYR ALA PHE SER ILE MET TRP GLU PHE ASP GLU ASN SEQRES 29 A 745 TYR SER VAL VAL ARG GLU PHE PHE GLY LYS THR VAL ILE SEQRES 30 A 745 ARG SER ARG ALA ALA LEU TYR TYR GLY ASP ALA GLN ARG SEQRES 31 A 745 MET ILE ASP ASP PRO GLU ASP GLU SER GLU ALA ALA VAL SEQRES 32 A 745 SER LEU ARG TYR LEU MET GLN LEU SER ARG HIS PHE ARG SEQRES 33 A 745 LYS ARG ARG GLU LYS ASP GLY ALA LEU PHE LEU CYS SER SEQRES 34 A 745 GLN GLU PHE LYS PHE LYS VAL ASP ASN ASP HIS VAL ASN SEQRES 35 A 745 PRO THR ASP MET GLN ALA TYR GLN THR PHE ASP SER ASN SEQRES 36 A 745 SER MET ILE GLU GLU TRP MET LEU PHE ALA ASN ALA ALA SEQRES 37 A 745 ALA ALA ARG ARG VAL TYR ALA SER PHE PRO ARG TRP THR SEQRES 38 A 745 LEU LEU ARG ARG HIS GLN ALA PRO ALA GLU ASN ALA PHE SEQRES 39 A 745 ASP THR LEU ASN GLU ALA ILE ARG ARG LYS ILE GLY VAL SEQRES 40 A 745 LYS LEU ASP ASP THR THR SER LEU ALA LEU ASN GLU SER SEQRES 41 A 745 LEU GLU LYS CYS VAL ASP PRO SER ASP PRO TYR PHE ASN SEQRES 42 A 745 ARG LEU ILE ARG THR LEU VAL THR ARG CYS LEU ARG GLN SEQRES 43 A 745 ALA GLN TYR PHE SER SER SER GLU VAL SER LYS ASP GLU SEQRES 44 A 745 PHE HIS HIS PHE GLY LEU ALA MET PRO ILE TYR THR HIS SEQRES 45 A 745 PHE THR SER PRO ILE ARG ARG TYR ALA ASP VAL ILE VAL SEQRES 46 A 745 HIS ARG GLN LEU ALA ALA ALA LEU GLY ILE MET ASP VAL SEQRES 47 A 745 SER GLU ALA HIS MET VAL SER VAL LYS MET GLU ALA LEU SEQRES 48 A 745 ALA SER ASN LEU ASN TYR ARG HIS GLU GLN ALA GLN LYS SEQRES 49 A 745 ALA GLY ARG ASP SER GLN ASN LEU PHE THR GLY PHE TYR SEQRES 50 A 745 LEU ARG ASN PHE ALA ASN GLN GLU ILE PRO SER GLU ASP SEQRES 51 A 745 GLY TYR VAL VAL LYS LEU SER GLU THR HIS VAL PHE VAL SEQRES 52 A 745 LEU VAL PRO LYS TYR GLY GLN GLU GLY LYS ILE ALA LYS SEQRES 53 A 745 GLU THR LEU VAL ARG VAL PRO ASN LEU LEU ASP LYS VAL SEQRES 54 A 745 LYS VAL GLY ILE GLU VAL ARG GLN ARG GLY ASP VAL LEU SEQRES 55 A 745 ARG ALA SER LEU VAL PHE SER ILE ILE GLY LEU MET LYS SEQRES 56 A 745 GLY CYS GLU ASP VAL SER GLU PRO VAL ALA ILE ALA GLY SEQRES 57 A 745 GLU GLU LEU PRO LEU LYS ARG GLN ARG LEU GLU HIS HIS SEQRES 58 A 745 HIS HIS HIS HIS SEQRES 1 B 4 G G U U HET U5P A1001 21 HET MG A1002 1 HET MG A1003 1 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 U5P C9 H13 N2 O9 P FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *253(H2 O) HELIX 1 AA1 ALA A 241 GLY A 252 1 12 HELIX 2 AA2 GLY A 287 ASN A 292 1 6 HELIX 3 AA3 PRO A 306 TRP A 310 5 5 HELIX 4 AA4 SER A 344 ARG A 351 1 8 HELIX 5 AA5 ASP A 375 LYS A 381 1 7 HELIX 6 AA6 HIS A 413 LYS A 418 1 6 HELIX 7 AA7 ASP A 449 ASN A 461 1 13 HELIX 8 AA8 SER A 469 ASP A 474 1 6 HELIX 9 AA9 THR A 484 GLY A 489 1 6 HELIX 10 AB1 ASP A 532 LEU A 537 1 6 HELIX 11 AB2 THR A 541 SER A 551 1 11 HELIX 12 AB3 PRO A 565 ASN A 571 1 7 HELIX 13 AB4 TYR A 614 ASP A 623 1 10 HELIX 14 AB5 SER A 628 GLY A 652 1 25 HELIX 15 AB6 PHE A 681 PHE A 706 1 26 HELIX 16 AB7 PHE A 723 GLY A 735 1 13 HELIX 17 AB8 THR A 742 LYS A 752 1 11 HELIX 18 AB9 TYR A 760 VAL A 769 1 10 HELIX 19 AC1 THR A 770 LEU A 773 5 4 HELIX 20 AC2 SER A 785 HIS A 790 5 6 HELIX 21 AC3 ARG A 808 GLY A 823 1 16 HELIX 22 AC4 VAL A 833 ARG A 868 1 36 HELIX 23 AC5 ASN A 869 ALA A 871 5 3 HELIX 24 AC6 GLU A 906 LEU A 908 5 3 SHEET 1 AA1 5 ARG A 282 PRO A 286 0 SHEET 2 AA1 5 PHE A 268 ARG A 272 -1 N GLY A 269 O LEU A 285 SHEET 3 AA1 5 LEU A 255 VAL A 261 -1 N ARG A 260 O GLU A 270 SHEET 4 AA1 5 ILE A 299 LEU A 304 -1 O VAL A 302 N LEU A 255 SHEET 5 AA1 5 GLY A 357 THR A 363 -1 O ARG A 358 N GLU A 303 SHEET 1 AA2 6 PHE A 370 ILE A 374 0 SHEET 2 AA2 6 VAL A 393 PRO A 399 -1 O GLN A 398 N SER A 373 SHEET 3 AA2 6 ILE A 407 THR A 411 -1 O ILE A 407 N PHE A 397 SHEET 4 AA2 6 VAL A 437 THR A 446 1 O GLY A 438 N ARG A 408 SHEET 5 AA2 6 LYS A 420 ASP A 428 -1 N ARG A 421 O GLY A 445 SHEET 6 AA2 6 PHE A 370 ILE A 374 -1 N PHE A 370 O VAL A 424 SHEET 1 AA3 5 LEU A 492 ASP A 493 0 SHEET 2 AA3 5 VAL A 596 ILE A 606 1 O LYS A 603 N LEU A 492 SHEET 3 AA3 5 ARG A 581 PHE A 590 -1 N GLU A 589 O VAL A 597 SHEET 4 AA3 5 HIS A 523 ALA A 531 -1 N LEU A 524 O PHE A 590 SHEET 5 AA3 5 ASP A 512 VAL A 519 -1 N ALA A 513 O HIS A 529 SHEET 1 AA4 2 VAL A 500 ASP A 503 0 SHEET 2 AA4 2 ALA A 610 TYR A 613 1 O LEU A 612 N SER A 501 SHEET 1 AA5 2 VAL A 554 TYR A 555 0 SHEET 2 AA5 2 ARG A 560 ILE A 561 -1 O ILE A 561 N VAL A 554 SHEET 1 AA6 2 PHE A 661 LYS A 664 0 SHEET 2 AA6 2 ASP A 674 ALA A 677 -1 O GLN A 676 N LYS A 662 SHEET 1 AA7 2 LEU A 711 ARG A 714 0 SHEET 2 AA7 2 GLN A 777 SER A 780 -1 O PHE A 779 N LEU A 712 SHEET 1 AA8 5 GLN A 899 ALA A 904 0 SHEET 2 AA8 5 HIS A 889 VAL A 894 -1 N VAL A 892 O GLY A 901 SHEET 3 AA8 5 GLU A 878 LEU A 885 -1 N LYS A 884 O PHE A 891 SHEET 4 AA8 5 LYS A 917 VAL A 924 -1 O VAL A 918 N GLY A 880 SHEET 5 AA8 5 LEU A 935 ILE A 939 -1 O VAL A 936 N GLU A 923 LINK OD1 ASP A 503 MG MG A1002 1555 1555 2.44 LINK OD2 ASP A 511 MG MG A1003 1555 1555 2.71 LINK O2P U5P A1001 MG MG A1003 1555 1555 2.85 LINK MG MG A1002 O3' U B 5 1555 1555 2.11 LINK MG MG A1003 O HOH A1102 1555 1555 2.93 CRYST1 66.296 91.113 148.305 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006743 0.00000