HEADER SIGNALING PROTEIN 03-FEB-22 7TV4 TITLE CRYSTAL STRUCTURE OF NEMO COZI IN COMPLEX WITH HOIP NZF1 AND LINEAR TITLE 2 DIUBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-KAPPA-B ESSENTIAL MODULATOR; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: NEMO,FIP-3,IKB KINASE-ASSOCIATED PROTEIN 1,IKKAP1,INHIBITOR COMPND 5 OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT GAMMA,I-KAPPA-B KINASE COMPND 6 SUBUNIT GAMMA,IKK-GAMMA,IKKG,IKB KINASE SUBUNIT GAMMA,NF-KAPPA-B COMPND 7 ESSENTIAL MODIFIER; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYUBIQUITIN-C; COMPND 11 CHAIN: C, G; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 15 CHAIN: K; COMPND 16 FRAGMENT: RESIDUES 350-379; COMPND 17 SYNONYM: HOIL-1-INTERACTING PROTEIN,HOIP,RING FINGER PROTEIN 31,RING- COMPND 18 TYPE E3 UBIQUITIN TRANSFERASE RNF31,ZINC IN-BETWEEN-RING-FINGER COMPND 19 UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 20 EC: 2.3.2.31; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IKBKG, FIP3, NEMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: RNF31, ZIBRA; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, UBIQUITIN SIGNALING, NF-KAPPA B SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR S.RAHIGHI,M.IYER,H.OVEISI REVDAT 2 18-OCT-23 7TV4 1 REMARK REVDAT 1 17-AUG-22 7TV4 0 JRNL AUTH S.RAHIGHI,M.IYER,H.OVEISI,S.NASSER,V.DUONG JRNL TITL STRUCTURAL BASIS FOR THE SIMULTANEOUS RECOGNITION OF NEMO JRNL TITL 2 AND ACCEPTOR UBIQUITIN BY THE HOIP NZF1 DOMAIN. JRNL REF SCI REP V. 12 12241 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 35851409 JRNL DOI 10.1038/S41598-022-16193-4 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.30000 REMARK 3 B22 (A**2) : 6.49000 REMARK 3 B33 (A**2) : -7.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.844 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 70.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3934 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3848 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5284 ; 1.497 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8988 ; 1.118 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 8.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;42.902 ;24.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;23.522 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.613 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4275 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 682 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7TV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5542 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.200 REMARK 200 RESOLUTION RANGE LOW (A) : 56.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 22% V/V PEG REMARK 280 SMEAR BROAD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.02500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.02500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, G, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 249 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 GLY B 252 REMARK 465 SER B 253 REMARK 465 PRO B 254 REMARK 465 GLU B 255 REMARK 465 PHE B 256 REMARK 465 GLY B 257 REMARK 465 MET B 258 REMARK 465 GLN B 259 REMARK 465 SER B 341 REMARK 465 LYS B 342 REMARK 465 LEU B 343 REMARK 465 LYS B 344 REMARK 465 ALA B 345 REMARK 465 SER B 346 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 LEU C 149 REMARK 465 ARG C 150 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 465 GLY D 249 REMARK 465 PRO D 250 REMARK 465 LEU D 251 REMARK 465 GLY D 252 REMARK 465 SER D 253 REMARK 465 PRO D 254 REMARK 465 GLU D 255 REMARK 465 PHE D 256 REMARK 465 GLY D 257 REMARK 465 MET D 258 REMARK 465 GLN D 259 REMARK 465 GLU D 339 REMARK 465 TYR D 340 REMARK 465 SER D 341 REMARK 465 LYS D 342 REMARK 465 LEU D 343 REMARK 465 LYS D 344 REMARK 465 ALA D 345 REMARK 465 SER D 346 REMARK 465 GLY G -3 REMARK 465 SER G -2 REMARK 465 GLY G 151 REMARK 465 GLY G 152 REMARK 465 GLY K 345 REMARK 465 PRO K 346 REMARK 465 LEU K 347 REMARK 465 GLY K 348 REMARK 465 SER K 349 REMARK 465 ALA K 350 REMARK 465 ARG K 351 REMARK 465 GLY K 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG G 150 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 319 OE2 GLU G 140 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 287 -71.03 -42.19 REMARK 500 LYS B 309 -78.71 -50.37 REMARK 500 GLN B 313 -75.69 -54.63 REMARK 500 PRO C 19 39.50 -77.60 REMARK 500 GLN C 62 -162.53 -114.55 REMARK 500 LYS C 63 150.28 -46.14 REMARK 500 GLU C 64 7.23 53.73 REMARK 500 MET C 77 69.79 74.32 REMARK 500 ILE C 79 -167.30 -123.85 REMARK 500 THR C 83 -167.99 -128.11 REMARK 500 LYS C 124 113.72 -167.33 REMARK 500 ALA D 288 -38.74 -38.16 REMARK 500 VAL D 298 -71.59 -45.21 REMARK 500 PRO D 299 -39.76 -36.93 REMARK 500 LYS D 309 -73.58 -57.05 REMARK 500 GLN D 330 20.45 -76.39 REMARK 500 THR G 7 -163.65 -77.78 REMARK 500 THR G 9 -140.82 -74.87 REMARK 500 LYS G 11 83.02 -61.41 REMARK 500 ALA G 46 -129.09 49.34 REMARK 500 ASN G 60 108.92 -45.07 REMARK 500 ARG G 72 170.15 -55.36 REMARK 500 GLN G 116 46.39 -90.67 REMARK 500 GLN K 357 37.94 -77.59 REMARK 500 SER K 358 -53.31 -122.28 REMARK 500 THR K 360 71.46 37.89 REMARK 500 GLU K 362 98.60 -65.86 REMARK 500 ILE K 372 -47.11 -134.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 75 GLY C 76 146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN K 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS K 356 SG REMARK 620 2 CYS K 359 SG 122.7 REMARK 620 3 CYS K 370 SG 116.8 111.2 REMARK 620 4 CYS K 373 SG 107.6 91.5 101.1 REMARK 620 N 1 2 3 DBREF 7TV4 B 257 346 UNP Q9Y6K9 NEMO_HUMAN 257 346 DBREF 7TV4 C 1 152 UNP P0CG48 UBC_HUMAN 77 228 DBREF 7TV4 D 257 346 UNP Q9Y6K9 NEMO_HUMAN 257 346 DBREF 7TV4 G 1 152 UNP P0CG48 UBC_HUMAN 77 228 DBREF 7TV4 K 350 379 UNP Q96EP0 RNF31_HUMAN 350 379 SEQADV 7TV4 GLY B 249 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PRO B 250 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 LEU B 251 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLY B 252 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 SER B 253 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PRO B 254 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLU B 255 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PHE B 256 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLY C -3 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 SER C -2 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 GLY C -1 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 SER C 0 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 GLY D 249 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PRO D 250 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 LEU D 251 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLY D 252 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 SER D 253 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PRO D 254 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLU D 255 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 PHE D 256 UNP Q9Y6K9 EXPRESSION TAG SEQADV 7TV4 GLY G -3 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 SER G -2 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 GLY G -1 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 SER G 0 UNP P0CG48 EXPRESSION TAG SEQADV 7TV4 GLY K 345 UNP Q96EP0 EXPRESSION TAG SEQADV 7TV4 PRO K 346 UNP Q96EP0 EXPRESSION TAG SEQADV 7TV4 LEU K 347 UNP Q96EP0 EXPRESSION TAG SEQADV 7TV4 GLY K 348 UNP Q96EP0 EXPRESSION TAG SEQADV 7TV4 SER K 349 UNP Q96EP0 EXPRESSION TAG SEQRES 1 B 98 GLY PRO LEU GLY SER PRO GLU PHE GLY MET GLN LEU GLU SEQRES 2 B 98 ASP LEU LYS GLN GLN LEU GLN GLN ALA GLU GLU ALA LEU SEQRES 3 B 98 VAL ALA LYS GLN GLU VAL ILE ASP LYS LEU LYS GLU GLU SEQRES 4 B 98 ALA GLU GLN HIS LYS ILE VAL MET GLU THR VAL PRO VAL SEQRES 5 B 98 LEU LYS ALA GLN ALA ASP ILE TYR LYS ALA ASP PHE GLN SEQRES 6 B 98 ALA GLU ARG GLN ALA ARG GLU LYS LEU ALA GLU LYS LYS SEQRES 7 B 98 GLU LEU LEU GLN GLU GLN LEU GLU GLN LEU GLN ARG GLU SEQRES 8 B 98 TYR SER LYS LEU LYS ALA SER SEQRES 1 C 156 GLY SER GLY SER MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 C 156 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 C 156 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 C 156 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 C 156 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 C 156 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 C 156 GLY GLY MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 8 C 156 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 9 C 156 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 10 C 156 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 11 C 156 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 12 C 156 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 98 GLY PRO LEU GLY SER PRO GLU PHE GLY MET GLN LEU GLU SEQRES 2 D 98 ASP LEU LYS GLN GLN LEU GLN GLN ALA GLU GLU ALA LEU SEQRES 3 D 98 VAL ALA LYS GLN GLU VAL ILE ASP LYS LEU LYS GLU GLU SEQRES 4 D 98 ALA GLU GLN HIS LYS ILE VAL MET GLU THR VAL PRO VAL SEQRES 5 D 98 LEU LYS ALA GLN ALA ASP ILE TYR LYS ALA ASP PHE GLN SEQRES 6 D 98 ALA GLU ARG GLN ALA ARG GLU LYS LEU ALA GLU LYS LYS SEQRES 7 D 98 GLU LEU LEU GLN GLU GLN LEU GLU GLN LEU GLN ARG GLU SEQRES 8 D 98 TYR SER LYS LEU LYS ALA SER SEQRES 1 G 156 GLY SER GLY SER MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 G 156 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 G 156 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 G 156 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 G 156 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 G 156 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 G 156 GLY GLY MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 8 G 156 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 9 G 156 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 10 G 156 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 11 G 156 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 12 G 156 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 K 35 GLY PRO LEU GLY SER ALA ARG GLY ARG TRP ALA CYS GLN SEQRES 2 K 35 SER CYS THR PHE GLU ASN GLU ALA ALA ALA VAL LEU CYS SEQRES 3 K 35 SER ILE CYS GLU ARG PRO ARG LEU ALA HET ZN K 401 1 HETNAM ZN ZINC ION FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *11(H2 O) HELIX 1 AA1 GLU B 261 GLU B 296 1 36 HELIX 2 AA2 GLU B 296 LEU B 336 1 41 HELIX 3 AA3 ILE C 23 GLY C 35 1 13 HELIX 4 AA4 PRO C 37 ASP C 39 5 3 HELIX 5 AA5 THR C 98 GLY C 111 1 14 HELIX 6 AA6 LEU C 132 ASN C 136 5 5 HELIX 7 AA7 LEU D 263 GLN D 330 1 68 HELIX 8 AA8 THR G 22 GLN G 31 1 10 HELIX 9 AA9 PRO G 37 ASP G 39 5 3 HELIX 10 AB1 THR G 98 GLY G 111 1 14 HELIX 11 AB2 LEU G 132 ASN G 136 5 5 SHEET 1 AA1 5 THR C 12 LEU C 15 0 SHEET 2 AA1 5 ILE C 3 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA1 5 THR C 66 LEU C 71 1 O LEU C 69 N LYS C 6 SHEET 4 AA1 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA1 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA2 4 ILE C 89 GLU C 92 0 SHEET 2 AA2 4 GLN C 78 LYS C 82 -1 N VAL C 81 O ILE C 89 SHEET 3 AA2 4 THR C 142 VAL C 146 1 O LEU C 143 N PHE C 80 SHEET 4 AA2 4 ARG C 118 ILE C 120 -1 N ILE C 120 O HIS C 144 SHEET 1 AA3 5 THR G 12 LEU G 15 0 SHEET 2 AA3 5 ILE G 3 LYS G 6 -1 N ILE G 3 O LEU G 15 SHEET 3 AA3 5 THR G 66 LEU G 71 1 O LEU G 69 N LYS G 6 SHEET 4 AA3 5 GLN G 41 PHE G 45 -1 N ILE G 44 O HIS G 68 SHEET 5 AA3 5 LYS G 48 GLN G 49 -1 O LYS G 48 N PHE G 45 SHEET 1 AA4 5 LYS G 87 VAL G 93 0 SHEET 2 AA4 5 MET G 77 THR G 83 -1 N ILE G 79 O LEU G 91 SHEET 3 AA4 5 THR G 142 VAL G 146 1 O LEU G 143 N PHE G 80 SHEET 4 AA4 5 ARG G 118 PHE G 121 -1 N ILE G 120 O HIS G 144 SHEET 5 AA4 5 LYS G 124 GLN G 125 -1 O LYS G 124 N PHE G 121 SHEET 1 AA5 2 TRP K 354 ALA K 355 0 SHEET 2 AA5 2 GLU K 362 ASN K 363 -1 O ASN K 363 N TRP K 354 LINK SG CYS K 356 ZN ZN K 401 1555 1555 2.33 LINK SG CYS K 359 ZN ZN K 401 1555 1555 2.33 LINK SG CYS K 370 ZN ZN K 401 1555 1555 2.30 LINK SG CYS K 373 ZN ZN K 401 1555 1555 2.28 CRYST1 55.950 69.560 180.050 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005554 0.00000