HEADER TRANSFERASE 09-FEB-22 7TXS TITLE X-RAY STRUCTURE OF THE VIOB N-AETYLTRANSFERASE FROM ACINETOBACTER TITLE 2 BAUMANNII IN THE PRESENCE OF A REACTION INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIOB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: VIOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS 4-AMINO-4, 6-DIDEOXY-D-GLUCOSE, BETA HELIX, ACINETOBACTER BAUMANNII, KEYWDS 2 N-ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.HERKERT,J.B.THODEN,H.M.HOLDEN REVDAT 4 18-OCT-23 7TXS 1 REMARK REVDAT 3 20-JUL-22 7TXS 1 JRNL REVDAT 2 30-MAR-22 7TXS 1 JRNL REVDAT 1 09-MAR-22 7TXS 0 JRNL AUTH N.R.HERKERT,J.B.THODEN,H.M.HOLDEN JRNL TITL STRUCTURE AND FUNCTION OF AN N-ACETYLTRANSFERASE FROM THE JRNL TITL 2 HUMAN PATHOGEN ACINETOBACTER BAUMANNII ISOLATE BAL_212. JRNL REF PROTEINS V. 90 1594 2022 JRNL REFN ESSN 1097-0134 JRNL PMID 35277885 JRNL DOI 10.1002/PROT.26334 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 66908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.037 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1743 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1666 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2396 ; 1.820 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3883 ; 1.464 ; 1.616 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 7.462 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;28.910 ;23.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 297 ;12.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1906 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 321 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7TXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70527 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7TXP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 - 12% POLY(ETHYLENE GLYCOL) 8000, REMARK 280 200 MM LICL, 5 MM DTDP-4-AMINO-4,6-DIDEOXY-D-GLUCOSE, 5 MM COA, REMARK 280 AND 100 MM MES (PH 6.0)., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.94200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.25668 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.31967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 48.94200 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.25668 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.31967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 48.94200 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.25668 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.31967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.51335 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.63933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 56.51335 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.63933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 56.51335 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.63933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 302 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 210 REMARK 465 GLU A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 654 O HOH A 662 1.99 REMARK 500 NZ LYS A 74 O HOH A 401 2.08 REMARK 500 O HOH A 517 O HOH A 604 2.16 REMARK 500 O HOH A 557 O HOH A 647 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 535 O HOH A 601 2555 2.14 REMARK 500 O HOH A 486 O HOH A 486 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 2.84 80.19 REMARK 500 THR A 116 -75.48 -82.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 682 DISTANCE = 6.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 130 OD1 REMARK 620 2 ASN A 130 OD1 0.0 REMARK 620 3 HOH A 525 O 75.8 75.8 REMARK 620 4 HOH A 525 O 90.7 90.7 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 166 OD1 REMARK 620 2 ASN A 166 OD1 0.0 REMARK 620 3 HOH A 468 O 85.4 85.4 REMARK 620 4 HOH A 468 O 90.8 90.8 90.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 415 O REMARK 620 2 HOH A 492 O 170.1 REMARK 620 3 HOH A 508 O 92.2 81.1 REMARK 620 4 HOH A 568 O 101.2 85.4 83.3 REMARK 620 5 HOH A 669 O 99.2 88.5 166.4 87.2 REMARK 620 6 HOH A 672 O 84.7 88.0 90.5 171.5 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 305 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 453 O REMARK 620 2 HOH A 492 O 85.8 REMARK 620 3 HOH A 583 O 89.1 90.5 REMARK 620 4 HOH A 669 O 89.4 81.0 171.5 REMARK 620 5 HOH A 682 O 177.6 94.1 93.3 88.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7TXP RELATED DB: PDB REMARK 900 RELATED ID: 7TXQ RELATED DB: PDB DBREF1 7TXS A 1 209 UNP A0A334FGR6_ACIBA DBREF2 7TXS A A0A334FGR6 1 209 SEQADV 7TXS LEU A 210 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS GLU A 211 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 212 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 213 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 214 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 215 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 216 UNP A0A334FGR EXPRESSION TAG SEQADV 7TXS HIS A 217 UNP A0A334FGR EXPRESSION TAG SEQRES 1 A 217 MET LYS GLU LEU ILE ILE VAL GLY ALA GLY GLY HIS GLY SEQRES 2 A 217 ASN GLU ILE SER TRP LEU ALA LYS ARG CYS GLY ARG VAL SEQRES 3 A 217 VAL ARG GLY PHE LEU ASP ASN THR VAL GLU LYS GLN GLY SEQRES 4 A 217 THR PHE ILE ARG ASP ILE PRO VAL LEU GLY THR LEU ASP SEQRES 5 A 217 GLU CYS SER LYS PHE THR ASP CYS ASP PHE VAL ILE ALA SEQRES 6 A 217 ILE GLY SER PRO ARG ALA ARG LYS LYS ILE ILE GLU HIS SEQRES 7 A 217 PHE PHE PRO GLU GLY GLU PHE THR PHE ALA THR LEU ILE SEQRES 8 A 217 ASP PRO THR ALA THR ILE GLY GLU ASN ILE HIS ILE GLU SEQRES 9 A 217 GLU GLY THR MET ILE CYS ALA GLY GLY ILE LEU THR VAL SEQRES 10 A 217 ASP VAL LYS LEU GLY LYS HIS CYS ILE VAL ASN THR ASN SEQRES 11 A 217 ALA VAL LEU SER HIS GLY VAL ILE LEU GLY ASP TYR VAL SEQRES 12 A 217 THR VAL ALA PRO ASN ALA SER ILE SER GLY ASP VAL SER SEQRES 13 A 217 LEU GLY ASN ILE VAL GLU ILE GLY ALA ASN ALA THR ILE SEQRES 14 A 217 ARG GLU LYS VAL SER VAL GLN ASP GLY ALA MET VAL GLY SEQRES 15 A 217 MET GLY SER VAL VAL ILE ARG ASN ILE LEU SER ASN GLN SEQRES 16 A 217 VAL VAL VAL GLY ASN PRO ALA LYS LEU LEU LYS VAL ILE SEQRES 17 A 217 GLU LEU GLU HIS HIS HIS HIS HIS HIS HET NH9 A 301 85 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HETNAM NH9 [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3- HETNAM 2 NH9 (PHOSPHONOOXY)OXOLAN-2-YL]METHYL (3R)-4-({3-[(2- HETNAM 3 NH9 {[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-DIHYDROXY-6-{[(R)- HETNAM 4 NH9 HYDROXY{[(R)-HYDROXY{[(2R,3S,5R)-3-HYDROXY-5-(5- HETNAM 5 NH9 METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)OXOLAN- HETNAM 6 NH9 2-YL]METHOXY}PHOSPHORYL]OXY}PHOSPHORYL]OXY}-2- HETNAM 7 NH9 METHYLOXAN-3-YL]AMINO}ETHYL]SULFANYL}ETHYL)AMINO]-3- HETNAM 8 NH9 OXOPROPYL}AMINO)-3-HYDROXY-2,2-DIMETHYL-4-OXOBUTYL HETNAM 9 NH9 DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) HETNAM NA SODIUM ION FORMUL 2 NH9 C39 H65 N10 O30 P5 S FORMUL 3 NA 4(NA 1+) FORMUL 7 HOH *282(H2 O) HELIX 1 AA1 GLY A 10 CYS A 23 1 14 HELIX 2 AA2 THR A 34 GLN A 38 5 5 HELIX 3 AA3 THR A 50 THR A 58 5 9 HELIX 4 AA4 SER A 68 PHE A 80 1 13 SHEET 1 AA1 6 PHE A 41 ILE A 42 0 SHEET 2 AA1 6 ILE A 45 GLY A 49 -1 O ILE A 45 N ILE A 42 SHEET 3 AA1 6 VAL A 27 LEU A 31 1 N PHE A 30 O LEU A 48 SHEET 4 AA1 6 LEU A 4 VAL A 7 1 N LEU A 4 O ARG A 28 SHEET 5 AA1 6 ASP A 61 ILE A 64 1 O VAL A 63 N VAL A 7 SHEET 6 AA1 6 THR A 86 PHE A 87 1 O THR A 86 N PHE A 62 SHEET 1 AA2 8 LEU A 90 ILE A 91 0 SHEET 2 AA2 8 MET A 108 ILE A 109 1 O ILE A 109 N LEU A 90 SHEET 3 AA2 8 ILE A 126 VAL A 127 1 O VAL A 127 N MET A 108 SHEET 4 AA2 8 THR A 144 VAL A 145 1 O VAL A 145 N ILE A 126 SHEET 5 AA2 8 GLU A 162 ILE A 163 1 O ILE A 163 N THR A 144 SHEET 6 AA2 8 MET A 180 VAL A 181 1 O VAL A 181 N GLU A 162 SHEET 7 AA2 8 GLN A 195 VAL A 198 1 O GLN A 195 N MET A 180 SHEET 8 AA2 8 LYS A 203 VAL A 207 -1 O LEU A 205 N VAL A 196 SHEET 1 AA3 6 THR A 96 GLU A 99 0 SHEET 2 AA3 6 ILE A 114 VAL A 117 1 O LEU A 115 N THR A 96 SHEET 3 AA3 6 VAL A 132 LEU A 133 1 O LEU A 133 N ILE A 114 SHEET 4 AA3 6 SER A 150 ILE A 151 1 O ILE A 151 N VAL A 132 SHEET 5 AA3 6 THR A 168 ILE A 169 1 O ILE A 169 N SER A 150 SHEET 6 AA3 6 VAL A 186 VAL A 187 1 O VAL A 187 N THR A 168 SHEET 1 AA4 5 HIS A 102 ILE A 103 0 SHEET 2 AA4 5 LYS A 120 LEU A 121 1 O LEU A 121 N HIS A 102 SHEET 3 AA4 5 ILE A 138 LEU A 139 1 O LEU A 139 N LYS A 120 SHEET 4 AA4 5 SER A 156 LEU A 157 1 O LEU A 157 N ILE A 138 SHEET 5 AA4 5 SER A 174 VAL A 175 1 O VAL A 175 N SER A 156 LINK OD1AASN A 130 NA NA A 302 1555 1555 2.46 LINK OD1AASN A 130 NA NA A 302 1555 2555 2.46 LINK OD1 ASN A 166 NA NA A 303 1555 1555 2.24 LINK OD1 ASN A 166 NA NA A 303 1555 2555 2.24 LINK NA NA A 302 O HOH A 525 1555 1555 2.31 LINK NA NA A 302 O HOH A 525 1555 3555 2.31 LINK NA NA A 303 O HOH A 468 1555 1555 2.25 LINK NA NA A 303 O HOH A 468 1555 3555 2.25 LINK NA NA A 304 O HOH A 415 1555 1555 2.11 LINK NA NA A 304 O HOH A 492 1555 1555 2.52 LINK NA NA A 304 O HOH A 508 1555 1555 2.48 LINK NA NA A 304 O HOH A 568 1555 1555 2.44 LINK NA NA A 304 O HOH A 669 1555 1555 2.31 LINK NA NA A 304 O HOH A 672 1555 1555 2.39 LINK NA NA A 305 O HOH A 453 1555 1555 2.33 LINK NA NA A 305 O HOH A 492 1555 1555 2.74 LINK NA NA A 305 O HOH A 583 1555 1555 2.37 LINK NA NA A 305 O HOH A 669 1555 1555 2.44 LINK NA NA A 305 O HOH A 682 1555 1555 2.40 CISPEP 1 ASN A 200 PRO A 201 0 -3.45 CRYST1 97.884 97.884 72.959 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010216 0.005898 0.000000 0.00000 SCALE2 0.000000 0.011797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013706 0.00000