HEADER TRANSFERASE/TRANSFERASE INHIBITOR 11-FEB-22 7TY2 TITLE CRYSTAL STRUCTURE OF SETD2 BOUND TO AN INDOLE-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 5 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 6 METHYLTRANSFERASE 3A,PROTEIN-LYSINE N-METHYLTRANSFERASE SETD2,SET COMPND 7 DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 8 EC: 2.1.1.359,2.1.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS HISTONE-LYSINE N-METHYLTRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.A.FARROW REVDAT 3 03-APR-24 7TY2 1 REMARK REVDAT 2 21-FEB-24 7TY2 1 REMARK REVDAT 1 31-AUG-22 7TY2 0 JRNL AUTH J.S.ALFORD,J.W.LAMPE,D.BRACH,R.CHESWORTH,K.COSMOPOULOS, JRNL AUTH 2 K.W.DUNCAN,S.T.ECKLEY,J.L.KUTOK,A.RAIMONDI,T.V.RIERA, JRNL AUTH 3 B.SHOOK,C.TANG,J.TOTMAN,N.A.FARROW JRNL TITL CONFORMATIONAL-DESIGN-DRIVEN DISCOVERY OF EZM0414: A JRNL TITL 2 SELECTIVE, POTENT SETD2 INHIBITOR FOR CLINICAL STUDIES. JRNL REF ACS MED.CHEM.LETT. V. 13 1137 2022 JRNL REFN ISSN 1948-5875 JRNL PMID 35859865 JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00167 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 10292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 579 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1888 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : 6.37000 REMARK 3 B33 (A**2) : -9.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.472 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.293 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.296 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.745 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2002 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1820 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2688 ; 1.550 ; 1.693 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4207 ; 1.194 ; 1.616 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 7.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;33.138 ;22.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;17.128 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2266 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1446 A 1465 REMARK 3 ORIGIN FOR THE GROUP (A): -23.1954 -8.9193 -6.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.0422 REMARK 3 T33: 0.0948 T12: -0.0636 REMARK 3 T13: -0.0115 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.4988 L22: 0.0701 REMARK 3 L33: 5.1096 L12: -0.0573 REMARK 3 L13: 0.4827 L23: -0.5980 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: 0.1541 S13: -0.1245 REMARK 3 S21: -0.0436 S22: 0.0258 S23: 0.0078 REMARK 3 S31: 0.3454 S32: -0.2086 S33: -0.0834 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1466 A 1485 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7663 4.6268 -6.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.2017 REMARK 3 T33: 0.0935 T12: -0.0708 REMARK 3 T13: -0.0163 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.6980 L22: 5.3367 REMARK 3 L33: 2.6121 L12: 0.5441 REMARK 3 L13: 0.1246 L23: -1.7724 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: 0.2411 S13: 0.0849 REMARK 3 S21: -0.1107 S22: 0.0180 S23: 0.1553 REMARK 3 S31: 0.1109 S32: -0.3507 S33: 0.1045 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1497 A 1525 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7571 8.3547 -21.9453 REMARK 3 T TENSOR REMARK 3 T11: 0.1449 T22: 0.4330 REMARK 3 T33: 0.0484 T12: -0.1831 REMARK 3 T13: -0.0052 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.3071 L22: 2.6867 REMARK 3 L33: 5.4576 L12: -0.7633 REMARK 3 L13: -0.9263 L23: 2.9233 REMARK 3 S TENSOR REMARK 3 S11: -0.1533 S12: 0.0010 S13: 0.0001 REMARK 3 S21: 0.2769 S22: 0.1567 S23: 0.0212 REMARK 3 S31: -0.0283 S32: 1.0533 S33: -0.0034 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1526 A 1538 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1540 10.4011 -22.8293 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.1007 REMARK 3 T33: 0.1071 T12: -0.0357 REMARK 3 T13: -0.0081 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1841 L22: 1.8624 REMARK 3 L33: 5.5409 L12: 0.1093 REMARK 3 L13: 0.1714 L23: 2.7246 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.0002 S13: -0.0286 REMARK 3 S21: -0.0600 S22: -0.0346 S23: -0.0518 REMARK 3 S31: -0.1221 S32: 0.1415 S33: 0.0664 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1539 A 1551 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7268 3.1801 -16.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.0608 REMARK 3 T33: 0.1311 T12: -0.0080 REMARK 3 T13: -0.0027 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.7081 L22: 1.8921 REMARK 3 L33: 4.4642 L12: 2.1702 REMARK 3 L13: -0.6818 L23: -0.3515 REMARK 3 S TENSOR REMARK 3 S11: -0.3949 S12: 0.1474 S13: 0.2805 REMARK 3 S21: -0.1810 S22: 0.1465 S23: 0.2475 REMARK 3 S31: 0.2678 S32: 0.1264 S33: 0.2484 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1552 A 1585 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0882 -2.1125 -1.3684 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.0180 REMARK 3 T33: 0.1370 T12: 0.0034 REMARK 3 T13: 0.0030 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.7189 L22: 0.0559 REMARK 3 L33: 2.0112 L12: 0.1586 REMARK 3 L13: 1.0831 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0731 S13: -0.0149 REMARK 3 S21: 0.0157 S22: 0.0269 S23: 0.0501 REMARK 3 S31: 0.3906 S32: 0.0970 S33: -0.0655 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1586 A 1598 REMARK 3 ORIGIN FOR THE GROUP (A): -23.6273 17.0981 5.7421 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.1050 REMARK 3 T33: 0.1746 T12: 0.0505 REMARK 3 T13: 0.0121 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.4986 L22: 5.4394 REMARK 3 L33: 5.9244 L12: 1.1991 REMARK 3 L13: -2.8658 L23: -3.7028 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: 0.1190 S13: 0.0462 REMARK 3 S21: 0.1762 S22: 0.0192 S23: 0.2638 REMARK 3 S31: -0.2934 S32: -0.2063 S33: -0.1637 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1599 A 1616 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4886 11.6909 2.7925 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0801 REMARK 3 T33: 0.1492 T12: 0.0102 REMARK 3 T13: 0.0012 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.1798 L22: 3.4491 REMARK 3 L33: 3.6016 L12: 2.3423 REMARK 3 L13: -2.1032 L23: -3.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: -0.0823 S13: -0.0292 REMARK 3 S21: -0.0572 S22: 0.0958 S23: -0.0591 REMARK 3 S31: -0.0398 S32: -0.1412 S33: 0.0367 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1617 A 1662 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0473 3.9005 -2.6736 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.0772 REMARK 3 T33: 0.1494 T12: 0.0274 REMARK 3 T13: -0.0336 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.1486 L22: 0.5477 REMARK 3 L33: 2.1424 L12: -0.1883 REMARK 3 L13: -0.5262 L23: 0.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.0709 S12: -0.0479 S13: 0.0596 REMARK 3 S21: 0.0704 S22: 0.1023 S23: 0.0872 REMARK 3 S31: 0.2266 S32: 0.2352 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1663 A 1682 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2115 8.5833 12.5531 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0704 REMARK 3 T33: 0.1124 T12: 0.0409 REMARK 3 T13: -0.0165 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.2193 L22: 5.0950 REMARK 3 L33: 1.4314 L12: -2.1571 REMARK 3 L13: -0.3686 L23: 0.5891 REMARK 3 S TENSOR REMARK 3 S11: -0.1943 S12: -0.0613 S13: 0.0829 REMARK 3 S21: 0.3614 S22: 0.1187 S23: -0.0880 REMARK 3 S31: 0.0235 S32: 0.1082 S33: 0.0756 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1683 A 1692 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9565 6.4634 15.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.3548 T22: 0.1552 REMARK 3 T33: 0.0617 T12: -0.0310 REMARK 3 T13: -0.1275 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 1.0320 L22: 5.8246 REMARK 3 L33: 0.9290 L12: 2.4344 REMARK 3 L13: -0.9669 L23: -2.2768 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: -0.0669 S13: 0.0296 REMARK 3 S21: 0.3688 S22: -0.0925 S23: 0.0533 REMARK 3 S31: -0.1686 S32: 0.1081 S33: -0.0058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7TY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.438 REMARK 200 RESOLUTION RANGE LOW (A) : 53.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: SETD2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 0.1 M REMARK 280 HEPES 7.5, 18% W/V PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.34650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.96150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.96150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.34650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1434 REMARK 465 GLU A 1435 REMARK 465 THR A 1436 REMARK 465 SER A 1437 REMARK 465 VAL A 1438 REMARK 465 PRO A 1439 REMARK 465 PRO A 1440 REMARK 465 GLY A 1441 REMARK 465 SER A 1442 REMARK 465 ALA A 1443 REMARK 465 LEU A 1444 REMARK 465 VAL A 1445 REMARK 465 LYS A 1486 REMARK 465 LYS A 1487 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 ARG A 1496 REMARK 465 GLN A 1511 REMARK 465 GLY A 1512 REMARK 465 ASN A 1693 REMARK 465 ARG A 1694 REMARK 465 VAL A 1695 REMARK 465 SER A 1696 REMARK 465 ILE A 1697 REMARK 465 ARG A 1698 REMARK 465 ALA A 1699 REMARK 465 ALA A 1700 REMARK 465 GLY A 1701 REMARK 465 GLY A 1702 REMARK 465 LYS A 1703 REMARK 465 MET A 1704 REMARK 465 LYS A 1705 REMARK 465 LYS A 1706 REMARK 465 GLU A 1707 REMARK 465 ARG A 1708 REMARK 465 SER A 1709 REMARK 465 ARG A 1710 REMARK 465 LYS A 1711 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1503 108.23 -50.31 REMARK 500 CYS A1516 69.55 63.32 REMARK 500 GLU A1518 -48.15 -25.10 REMARK 500 VAL A1576 -69.15 -94.72 REMARK 500 LYS A1610 -168.36 -161.50 REMARK 500 PHE A1668 129.66 -171.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 110.8 REMARK 620 3 CYS A1516 SG 108.7 100.3 REMARK 620 4 CYS A1520 SG 113.2 109.1 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 124.5 REMARK 620 3 CYS A1533 SG 100.1 101.5 REMARK 620 4 CYS A1539 SG 108.8 110.0 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 124.4 REMARK 620 3 CYS A1680 SG 108.9 100.0 REMARK 620 4 CYS A1685 SG 106.7 106.7 109.5 REMARK 620 N 1 2 3 DBREF 7TY2 A 1434 1711 UNP Q9BYW2 SETD2_HUMAN 1434 1711 SEQRES 1 A 278 GLY GLU THR SER VAL PRO PRO GLY SER ALA LEU VAL GLY SEQRES 2 A 278 PRO SER CYS VAL MET ASP ASP PHE ARG ASP PRO GLN ARG SEQRES 3 A 278 TRP LYS GLU CYS ALA LYS GLN GLY LYS MET PRO CYS TYR SEQRES 4 A 278 PHE ASP LEU ILE GLU GLU ASN VAL TYR LEU THR GLU ARG SEQRES 5 A 278 LYS LYS ASN LYS SER HIS ARG ASP ILE LYS ARG MET GLN SEQRES 6 A 278 CYS GLU CYS THR PRO LEU SER LYS ASP GLU ARG ALA GLN SEQRES 7 A 278 GLY GLU ILE ALA CYS GLY GLU ASP CYS LEU ASN ARG LEU SEQRES 8 A 278 LEU MET ILE GLU CYS SER SER ARG CYS PRO ASN GLY ASP SEQRES 9 A 278 TYR CYS SER ASN ARG ARG PHE GLN ARG LYS GLN HIS ALA SEQRES 10 A 278 ASP VAL GLU VAL ILE LEU THR GLU LYS LYS GLY TRP GLY SEQRES 11 A 278 LEU ARG ALA ALA LYS ASP LEU PRO SER ASN THR PHE VAL SEQRES 12 A 278 LEU GLU TYR CYS GLY GLU VAL LEU ASP HIS LYS GLU PHE SEQRES 13 A 278 LYS ALA ARG VAL LYS GLU TYR ALA ARG ASN LYS ASN ILE SEQRES 14 A 278 HIS TYR TYR PHE MET ALA LEU LYS ASN ASP GLU ILE ILE SEQRES 15 A 278 ASP ALA THR GLN LYS GLY ASN CYS SER ARG PHE MET ASN SEQRES 16 A 278 HIS SER CYS GLU PRO ASN CYS GLU THR GLN LYS TRP THR SEQRES 17 A 278 VAL ASN GLY GLN LEU ARG VAL GLY PHE PHE THR THR LYS SEQRES 18 A 278 LEU VAL PRO SER GLY SER GLU LEU THR PHE ASP TYR GLN SEQRES 19 A 278 PHE GLN ARG TYR GLY LYS GLU ALA GLN LYS CYS PHE CYS SEQRES 20 A 278 GLY SER ALA ASN CYS ARG GLY TYR LEU GLY GLY GLU ASN SEQRES 21 A 278 ARG VAL SER ILE ARG ALA ALA GLY GLY LYS MET LYS LYS SEQRES 22 A 278 GLU ARG SER ARG LYS HET ZN A1801 1 HET ZN A1802 1 HET ZN A1803 1 HET SAM A1804 27 HET KS6 A1805 29 HETNAM ZN ZINC ION HETNAM SAM S-ADENOSYLMETHIONINE HETNAM KS6 N-[(1R,3S)-3-(4-ACETYLPIPERAZIN-1-YL)CYCLOHEXYL]-4- HETNAM 2 KS6 FLUORO-7-METHYL-1H-INDOLE-2-CARBOXAMIDE FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SAM C15 H22 N6 O5 S FORMUL 6 KS6 C22 H29 F N4 O2 FORMUL 7 HOH *8(H2 O) HELIX 1 AA1 ASP A 1452 ARG A 1455 5 4 HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11 HELIX 3 AA3 CYS A 1520 LEU A 1525 1 6 HELIX 4 AA4 ASN A 1535 CYS A 1539 5 5 HELIX 5 AA5 ASP A 1585 ASN A 1599 1 15 HELIX 6 AA6 ASN A 1622 MET A 1627 5 6 SHEET 1 AA1 5 SER A1448 VAL A1450 0 SHEET 2 AA1 5 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449 SHEET 3 AA1 5 TRP A1562 ALA A1566 -1 O GLY A1563 N ILE A1555 SHEET 4 AA1 5 GLU A1661 PHE A1664 -1 O LEU A1662 N LEU A1564 SHEET 5 AA1 5 ASN A1628 HIS A1629 1 N ASN A1628 O PHE A1664 SHEET 1 AA2 2 ASP A1474 LEU A1475 0 SHEET 2 AA2 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 AA3 4 VAL A1480 TYR A1481 0 SHEET 2 AA3 4 GLU A1582 LEU A1584 1 O VAL A1583 N VAL A1480 SHEET 3 AA3 4 GLU A1613 ASP A1616 -1 O ASP A1616 N GLU A1582 SHEET 4 AA3 4 PHE A1606 LYS A1610 -1 N LYS A1610 O GLU A1613 SHEET 1 AA4 3 PHE A1575 GLU A1578 0 SHEET 2 AA4 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576 SHEET 3 AA4 3 CYS A1635 VAL A1642 -1 N TRP A1640 O ARG A1647 LINK SG CYS A1499 ZN ZN A1801 1555 1555 2.30 LINK SG CYS A1501 ZN ZN A1801 1555 1555 2.36 LINK SG CYS A1516 ZN ZN A1801 1555 1555 2.35 LINK SG CYS A1516 ZN ZN A1802 1555 1555 2.32 LINK SG CYS A1520 ZN ZN A1801 1555 1555 2.35 LINK SG CYS A1529 ZN ZN A1802 1555 1555 2.30 LINK SG CYS A1533 ZN ZN A1802 1555 1555 2.33 LINK SG CYS A1539 ZN ZN A1802 1555 1555 2.34 LINK SG CYS A1631 ZN ZN A1803 1555 1555 2.33 LINK SG CYS A1678 ZN ZN A1803 1555 1555 2.29 LINK SG CYS A1680 ZN ZN A1803 1555 1555 2.30 LINK SG CYS A1685 ZN ZN A1803 1555 1555 2.35 CRYST1 48.693 75.740 75.923 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020537 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013171 0.00000