HEADER LIGASE 15-FEB-22 7TZB TITLE CRYSTAL STRUCTURE OF THE HUMAN MITOCHONDRIAL SERYL-TRNA SYNTHETASE (MT TITLE 2 SERRS) BOUND WITH A SERYL-ADENYLATE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE--TRNA LIGASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERRSMT,SERYL-TRNA SYNTHETASE,SERRS,SERYL-TRNA(SER/SEC) COMPND 5 SYNTHETASE; COMPND 6 EC: 6.1.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SARS2, SARSM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS SERYL-TRNA SYNTHETASE, MITOCHONDRIA, AMINOACYLATION, TRANSLATION, KEYWDS 2 TRNA, CLASS II, ALPHA-BETA DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.KUHLE,M.HIRSCHI,L.DOERFEL,G.LANDER,P.SCHIMMEL REVDAT 2 18-OCT-23 7TZB 1 REMARK REVDAT 1 14-SEP-22 7TZB 0 JRNL AUTH B.KUHLE,M.HIRSCHI,L.K.DOERFEL,G.C.LANDER,P.SCHIMMEL JRNL TITL STRUCTURAL BASIS FOR SHAPE-SELECTIVE RECOGNITION AND JRNL TITL 2 AMINOACYLATION OF A D-ARMLESS HUMAN MITOCHONDRIAL TRNA. JRNL REF NAT COMMUN V. 13 5100 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36042193 JRNL DOI 10.1038/S41467-022-32544-1 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 23445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6500 - 5.8900 0.98 2973 157 0.1897 0.2487 REMARK 3 2 5.8900 - 4.6800 0.99 2997 158 0.2186 0.2240 REMARK 3 3 4.6800 - 4.0900 1.00 3004 158 0.2089 0.2666 REMARK 3 4 4.0900 - 3.7100 0.80 2424 128 0.2732 0.3050 REMARK 3 5 3.7100 - 3.4500 0.70 2126 111 0.3235 0.4242 REMARK 3 6 3.4500 - 3.2400 0.91 2758 145 0.3645 0.4167 REMARK 3 7 3.2400 - 3.0800 1.00 2983 158 0.3293 0.3882 REMARK 3 8 3.0800 - 2.9500 0.99 3008 157 0.4448 0.5068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 98.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5389 37.4818 -51.7814 REMARK 3 T TENSOR REMARK 3 T11: 1.0110 T22: 1.2123 REMARK 3 T33: 1.7299 T12: -0.2142 REMARK 3 T13: -0.3930 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 3.3968 L22: 4.1917 REMARK 3 L33: 1.1984 L12: -1.1567 REMARK 3 L13: -1.4801 L23: 2.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.6402 S13: -0.4996 REMARK 3 S21: -1.3180 S22: 0.6421 S23: 1.3861 REMARK 3 S31: 1.0216 S32: -0.0920 S33: -0.5321 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6391 47.9731 -44.0995 REMARK 3 T TENSOR REMARK 3 T11: 1.2607 T22: 1.5917 REMARK 3 T33: 1.9714 T12: -0.0811 REMARK 3 T13: 0.0334 T23: 0.2839 REMARK 3 L TENSOR REMARK 3 L11: 4.8554 L22: 3.3082 REMARK 3 L33: 2.1129 L12: 0.0609 REMARK 3 L13: -0.3133 L23: 2.2660 REMARK 3 S TENSOR REMARK 3 S11: 1.6353 S12: 1.8150 S13: 1.0066 REMARK 3 S21: -1.8858 S22: -1.0220 S23: 1.2802 REMARK 3 S31: -2.2457 S32: -0.7493 S33: -0.6131 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5211 30.5886 -48.1889 REMARK 3 T TENSOR REMARK 3 T11: 0.6864 T22: 0.9324 REMARK 3 T33: 0.8684 T12: -0.2762 REMARK 3 T13: -0.0953 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: -0.3335 L22: 1.4068 REMARK 3 L33: 1.3292 L12: -0.6570 REMARK 3 L13: -0.0401 L23: -0.2288 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: 0.2105 S13: -0.5551 REMARK 3 S21: -0.5367 S22: -0.0332 S23: 0.5517 REMARK 3 S31: 0.0874 S32: -0.3986 S33: -0.0768 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4453 34.2268 -39.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.4735 T22: 0.5953 REMARK 3 T33: 0.7494 T12: -0.0920 REMARK 3 T13: -0.1258 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.7341 L22: 4.4433 REMARK 3 L33: 2.9146 L12: -2.6811 REMARK 3 L13: 0.0712 L23: 0.8141 REMARK 3 S TENSOR REMARK 3 S11: -0.0832 S12: -0.0587 S13: -0.2109 REMARK 3 S21: -0.3227 S22: -0.0687 S23: 0.3335 REMARK 3 S31: 0.1283 S32: -0.3292 S33: 0.0941 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8755 26.8050 -47.8558 REMARK 3 T TENSOR REMARK 3 T11: 0.8671 T22: 0.7890 REMARK 3 T33: 0.8953 T12: -0.0796 REMARK 3 T13: -0.0889 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.6596 L22: 6.1268 REMARK 3 L33: 2.1233 L12: -1.2805 REMARK 3 L13: -1.4466 L23: 3.3075 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: -0.3184 S13: -0.4427 REMARK 3 S21: -1.6445 S22: 0.0946 S23: -0.0273 REMARK 3 S31: 0.7418 S32: -0.4553 S33: -0.0927 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 361 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1360 31.9836 -50.9055 REMARK 3 T TENSOR REMARK 3 T11: 0.6991 T22: 0.7195 REMARK 3 T33: 0.5717 T12: -0.2230 REMARK 3 T13: -0.0585 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 3.5595 L22: 4.9681 REMARK 3 L33: 1.9285 L12: -0.5147 REMARK 3 L13: -0.0559 L23: -0.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.2268 S12: 0.6263 S13: -0.0258 REMARK 3 S21: -0.6731 S22: 0.2003 S23: -0.2444 REMARK 3 S31: 0.0161 S32: 0.0264 S33: 0.0280 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6182 -11.0457 -19.8715 REMARK 3 T TENSOR REMARK 3 T11: 1.2854 T22: 0.7955 REMARK 3 T33: 1.8831 T12: -0.1122 REMARK 3 T13: 0.1469 T23: 0.2851 REMARK 3 L TENSOR REMARK 3 L11: 2.3986 L22: 4.2338 REMARK 3 L33: 4.0424 L12: -0.6941 REMARK 3 L13: -0.4366 L23: 5.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.3317 S12: -0.0789 S13: -1.1945 REMARK 3 S21: 0.9354 S22: 0.5102 S23: -0.1512 REMARK 3 S31: 1.2446 S32: 0.1836 S33: 0.0794 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5133 -26.7803 -30.2772 REMARK 3 T TENSOR REMARK 3 T11: 1.5970 T22: 1.0413 REMARK 3 T33: 2.1123 T12: -0.3710 REMARK 3 T13: 0.0261 T23: -0.1679 REMARK 3 L TENSOR REMARK 3 L11: 1.9988 L22: 4.5863 REMARK 3 L33: 0.0155 L12: -0.3869 REMARK 3 L13: -0.2044 L23: 0.1669 REMARK 3 S TENSOR REMARK 3 S11: -0.3472 S12: 0.7244 S13: -0.8041 REMARK 3 S21: -1.7507 S22: -0.4644 S23: 2.3159 REMARK 3 S31: -0.0402 S32: -0.0745 S33: 0.5396 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 170 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.0532 23.6061 -23.8911 REMARK 3 T TENSOR REMARK 3 T11: 0.5225 T22: 0.5859 REMARK 3 T33: 0.7361 T12: -0.0418 REMARK 3 T13: -0.0569 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.6960 L22: 4.4589 REMARK 3 L33: 1.7792 L12: -0.3576 REMARK 3 L13: -0.5278 L23: -0.3231 REMARK 3 S TENSOR REMARK 3 S11: -0.1945 S12: -0.1869 S13: -0.2028 REMARK 3 S21: 0.2549 S22: 0.2895 S23: -0.0692 REMARK 3 S31: 0.1205 S32: -0.0269 S33: -0.1043 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 330 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7633 21.2252 -16.6028 REMARK 3 T TENSOR REMARK 3 T11: 0.6271 T22: 0.5804 REMARK 3 T33: 0.6801 T12: -0.0270 REMARK 3 T13: -0.0498 T23: 0.0908 REMARK 3 L TENSOR REMARK 3 L11: 0.9965 L22: 4.8426 REMARK 3 L33: 2.8488 L12: -0.1795 REMARK 3 L13: 1.0797 L23: -0.2486 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.5630 S13: -0.3887 REMARK 3 S21: 0.4347 S22: 0.3288 S23: 0.0683 REMARK 3 S31: 0.1959 S32: 0.0119 S33: -0.3199 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3250 28.4929 -20.9971 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.5932 REMARK 3 T33: 0.6584 T12: -0.0286 REMARK 3 T13: -0.0291 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3138 L22: 7.5352 REMARK 3 L33: 2.6390 L12: 0.3192 REMARK 3 L13: 0.0571 L23: -0.1160 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.1644 S13: -0.2066 REMARK 3 S21: 0.9032 S22: -0.0403 S23: -0.3973 REMARK 3 S31: 0.0212 S32: 0.1705 S33: 0.0983 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 39 THROUGH 278 OR REMARK 3 RESID 280 THROUGH 334 OR RESID 339 REMARK 3 THROUGH 506)) REMARK 3 SELECTION : (CHAIN B AND (RESID 39 THROUGH 122 OR REMARK 3 (RESID 123 THROUGH 125 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR (RESID 128 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 129 THROUGH 130 OR (RESID 131 THROUGH 132 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 133 THROUGH 278 REMARK 3 OR RESID 280 THROUGH 334 OR RESID 339 REMARK 3 THROUGH 506)) REMARK 3 ATOM PAIRS NUMBER : 2816 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TZB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 37.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 5.082 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.96 REMARK 200 R MERGE FOR SHELL (I) : 1.08200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDBID 1WLE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE, 10 MM SPERMIDINE, 8% PEG REMARK 280 6000, PH 9.0, EVAPORATION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.29500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.47159 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.49000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.29500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.47159 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.49000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.29500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.47159 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.49000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.94318 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 94.98000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 86.94318 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 94.98000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 86.94318 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 35 REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 SER A 126 REMARK 465 GLY A 127 REMARK 465 THR A 335 REMARK 465 GLY A 336 REMARK 465 GLN A 337 REMARK 465 ARG A 507 REMARK 465 LYS A 508 REMARK 465 PRO A 509 REMARK 465 GLY A 510 REMARK 465 LEU A 511 REMARK 465 PRO A 512 REMARK 465 GLY A 513 REMARK 465 GLN A 514 REMARK 465 PRO A 515 REMARK 465 ALA A 516 REMARK 465 VAL A 517 REMARK 465 SER A 518 REMARK 465 THR B 35 REMARK 465 THR B 36 REMARK 465 GLU B 37 REMARK 465 LYS B 38 REMARK 465 ASP B 125 REMARK 465 SER B 126 REMARK 465 GLY B 127 REMARK 465 GLU B 128 REMARK 465 GLY B 336 REMARK 465 GLN B 337 REMARK 465 GLU B 338 REMARK 465 ARG B 507 REMARK 465 LYS B 508 REMARK 465 PRO B 509 REMARK 465 GLY B 510 REMARK 465 LEU B 511 REMARK 465 PRO B 512 REMARK 465 GLY B 513 REMARK 465 GLN B 514 REMARK 465 PRO B 515 REMARK 465 ALA B 516 REMARK 465 VAL B 517 REMARK 465 SER B 518 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 ASP A 132 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 59 41.99 -103.20 REMARK 500 THR A 426 -134.38 52.21 REMARK 500 GLN B 185 34.26 -98.17 REMARK 500 THR B 426 -132.11 57.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TZB A 35 518 UNP Q9NP81 SYSM_HUMAN 35 518 DBREF 7TZB B 35 518 UNP Q9NP81 SYSM_HUMAN 35 518 SEQRES 1 A 484 THR THR GLU LYS ARG ASN ARG ASN LEU LEU TYR GLU TYR SEQRES 2 A 484 ALA ARG GLU GLY TYR SER ALA LEU PRO GLN LEU ASP ILE SEQRES 3 A 484 GLU ARG PHE CYS ALA CYS PRO GLU GLU ALA ALA HIS ALA SEQRES 4 A 484 LEU GLU LEU ARG LYS GLY GLU LEU ARG SER ALA ASP LEU SEQRES 5 A 484 PRO ALA ILE ILE SER THR TRP GLN GLU LEU ARG GLN LEU SEQRES 6 A 484 GLN GLU GLN ILE ARG SER LEU GLU GLU GLU LYS ALA ALA SEQRES 7 A 484 VAL THR GLU ALA VAL ARG ALA LEU LEU ALA ASN GLN ASP SEQRES 8 A 484 SER GLY GLU VAL GLN GLN ASP PRO LYS TYR GLN GLY LEU SEQRES 9 A 484 ARG ALA ARG GLY ARG GLU ILE ARG LYS GLU LEU VAL HIS SEQRES 10 A 484 LEU TYR PRO ARG GLU ALA GLN LEU GLU GLU GLN PHE TYR SEQRES 11 A 484 LEU GLN ALA LEU LYS LEU PRO ASN GLN THR HIS PRO ASP SEQRES 12 A 484 VAL PRO VAL GLY ASP GLU SER GLN ALA ARG VAL LEU HIS SEQRES 13 A 484 MET VAL GLY ASP LYS PRO VAL PHE SER PHE GLN PRO ARG SEQRES 14 A 484 GLY HIS LEU GLU ILE GLY GLU LYS LEU ASP ILE ILE ARG SEQRES 15 A 484 GLN LYS ARG LEU SER HIS VAL SER GLY HIS ARG SER TYR SEQRES 16 A 484 TYR LEU ARG GLY ALA GLY ALA LEU LEU GLN HIS GLY LEU SEQRES 17 A 484 VAL ASN PHE THR PHE ASN LYS LEU LEU ARG ARG GLY PHE SEQRES 18 A 484 THR PRO MET THR VAL PRO ASP LEU LEU ARG GLY ALA VAL SEQRES 19 A 484 PHE GLU GLY CYS GLY MET THR PRO ASN ALA ASN PRO SER SEQRES 20 A 484 GLN ILE TYR ASN ILE ASP PRO ALA ARG PHE LYS ASP LEU SEQRES 21 A 484 ASN LEU ALA GLY THR ALA GLU VAL GLY LEU ALA GLY TYR SEQRES 22 A 484 PHE MET ASP HIS THR VAL ALA PHE ARG ASP LEU PRO VAL SEQRES 23 A 484 ARG MET VAL CYS SER SER THR CYS TYR ARG ALA GLU THR SEQRES 24 A 484 ASN THR GLY GLN GLU PRO ARG GLY LEU TYR ARG VAL HIS SEQRES 25 A 484 HIS PHE THR LYS VAL GLU MET PHE GLY VAL THR GLY PRO SEQRES 26 A 484 GLY LEU GLU GLN SER SER GLN LEU LEU GLU GLU PHE LEU SEQRES 27 A 484 SER LEU GLN MET GLU ILE LEU THR GLU LEU GLY LEU HIS SEQRES 28 A 484 PHE ARG VAL LEU ASP MET PRO THR GLN GLU LEU GLY LEU SEQRES 29 A 484 PRO ALA TYR ARG LYS PHE ASP ILE GLU ALA TRP MET PRO SEQRES 30 A 484 GLY ARG GLY ARG PHE GLY GLU VAL THR SER ALA SER ASN SEQRES 31 A 484 CYS THR ASP PHE GLN SER ARG ARG LEU HIS ILE MET PHE SEQRES 32 A 484 GLN THR GLU ALA GLY GLU LEU GLN PHE ALA HIS THR VAL SEQRES 33 A 484 ASN ALA THR ALA CYS ALA VAL PRO ARG LEU LEU ILE ALA SEQRES 34 A 484 LEU LEU GLU SER ASN GLN GLN LYS ASP GLY SER VAL LEU SEQRES 35 A 484 VAL PRO PRO ALA LEU GLN SER TYR LEU GLY THR ASP ARG SEQRES 36 A 484 ILE THR ALA PRO THR HIS VAL PRO LEU GLN TYR ILE GLY SEQRES 37 A 484 PRO ASN GLN PRO ARG LYS PRO GLY LEU PRO GLY GLN PRO SEQRES 38 A 484 ALA VAL SER SEQRES 1 B 484 THR THR GLU LYS ARG ASN ARG ASN LEU LEU TYR GLU TYR SEQRES 2 B 484 ALA ARG GLU GLY TYR SER ALA LEU PRO GLN LEU ASP ILE SEQRES 3 B 484 GLU ARG PHE CYS ALA CYS PRO GLU GLU ALA ALA HIS ALA SEQRES 4 B 484 LEU GLU LEU ARG LYS GLY GLU LEU ARG SER ALA ASP LEU SEQRES 5 B 484 PRO ALA ILE ILE SER THR TRP GLN GLU LEU ARG GLN LEU SEQRES 6 B 484 GLN GLU GLN ILE ARG SER LEU GLU GLU GLU LYS ALA ALA SEQRES 7 B 484 VAL THR GLU ALA VAL ARG ALA LEU LEU ALA ASN GLN ASP SEQRES 8 B 484 SER GLY GLU VAL GLN GLN ASP PRO LYS TYR GLN GLY LEU SEQRES 9 B 484 ARG ALA ARG GLY ARG GLU ILE ARG LYS GLU LEU VAL HIS SEQRES 10 B 484 LEU TYR PRO ARG GLU ALA GLN LEU GLU GLU GLN PHE TYR SEQRES 11 B 484 LEU GLN ALA LEU LYS LEU PRO ASN GLN THR HIS PRO ASP SEQRES 12 B 484 VAL PRO VAL GLY ASP GLU SER GLN ALA ARG VAL LEU HIS SEQRES 13 B 484 MET VAL GLY ASP LYS PRO VAL PHE SER PHE GLN PRO ARG SEQRES 14 B 484 GLY HIS LEU GLU ILE GLY GLU LYS LEU ASP ILE ILE ARG SEQRES 15 B 484 GLN LYS ARG LEU SER HIS VAL SER GLY HIS ARG SER TYR SEQRES 16 B 484 TYR LEU ARG GLY ALA GLY ALA LEU LEU GLN HIS GLY LEU SEQRES 17 B 484 VAL ASN PHE THR PHE ASN LYS LEU LEU ARG ARG GLY PHE SEQRES 18 B 484 THR PRO MET THR VAL PRO ASP LEU LEU ARG GLY ALA VAL SEQRES 19 B 484 PHE GLU GLY CYS GLY MET THR PRO ASN ALA ASN PRO SER SEQRES 20 B 484 GLN ILE TYR ASN ILE ASP PRO ALA ARG PHE LYS ASP LEU SEQRES 21 B 484 ASN LEU ALA GLY THR ALA GLU VAL GLY LEU ALA GLY TYR SEQRES 22 B 484 PHE MET ASP HIS THR VAL ALA PHE ARG ASP LEU PRO VAL SEQRES 23 B 484 ARG MET VAL CYS SER SER THR CYS TYR ARG ALA GLU THR SEQRES 24 B 484 ASN THR GLY GLN GLU PRO ARG GLY LEU TYR ARG VAL HIS SEQRES 25 B 484 HIS PHE THR LYS VAL GLU MET PHE GLY VAL THR GLY PRO SEQRES 26 B 484 GLY LEU GLU GLN SER SER GLN LEU LEU GLU GLU PHE LEU SEQRES 27 B 484 SER LEU GLN MET GLU ILE LEU THR GLU LEU GLY LEU HIS SEQRES 28 B 484 PHE ARG VAL LEU ASP MET PRO THR GLN GLU LEU GLY LEU SEQRES 29 B 484 PRO ALA TYR ARG LYS PHE ASP ILE GLU ALA TRP MET PRO SEQRES 30 B 484 GLY ARG GLY ARG PHE GLY GLU VAL THR SER ALA SER ASN SEQRES 31 B 484 CYS THR ASP PHE GLN SER ARG ARG LEU HIS ILE MET PHE SEQRES 32 B 484 GLN THR GLU ALA GLY GLU LEU GLN PHE ALA HIS THR VAL SEQRES 33 B 484 ASN ALA THR ALA CYS ALA VAL PRO ARG LEU LEU ILE ALA SEQRES 34 B 484 LEU LEU GLU SER ASN GLN GLN LYS ASP GLY SER VAL LEU SEQRES 35 B 484 VAL PRO PRO ALA LEU GLN SER TYR LEU GLY THR ASP ARG SEQRES 36 B 484 ILE THR ALA PRO THR HIS VAL PRO LEU GLN TYR ILE GLY SEQRES 37 B 484 PRO ASN GLN PRO ARG LYS PRO GLY LEU PRO GLY GLN PRO SEQRES 38 B 484 ALA VAL SER HET SSA A 601 29 HET SSA B 601 29 HETNAM SSA 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE FORMUL 3 SSA 2(C13 H19 N7 O8 S) HELIX 1 AA1 ASN A 42 GLU A 50 1 9 HELIX 2 AA2 ASP A 59 CYS A 66 1 8 HELIX 3 AA3 CYS A 66 LYS A 78 1 13 HELIX 4 AA4 ARG A 82 ALA A 84 5 3 HELIX 5 AA5 ASP A 85 ASP A 125 1 41 HELIX 6 AA6 ASP A 132 LYS A 169 1 38 HELIX 7 AA7 ASP A 182 ALA A 186 5 5 HELIX 8 AA8 GLY A 204 LEU A 212 1 9 HELIX 9 AA9 GLY A 233 ARG A 253 1 21 HELIX 10 AB1 ARG A 265 CYS A 272 1 8 HELIX 11 AB2 ALA A 300 MET A 309 1 10 HELIX 12 AB3 GLY A 360 LEU A 382 1 23 HELIX 13 AB4 PRO A 392 GLY A 397 1 6 HELIX 14 AB5 ASP A 427 HIS A 434 1 8 HELIX 15 AB6 VAL A 457 ASN A 468 1 12 HELIX 16 AB7 PRO A 478 ALA A 480 5 3 HELIX 17 AB8 LEU A 481 GLY A 486 1 6 HELIX 18 AB9 ASN B 42 GLU B 50 1 9 HELIX 19 AC1 ASP B 59 CYS B 66 1 8 HELIX 20 AC2 CYS B 66 LYS B 78 1 13 HELIX 21 AC3 ALA B 84 GLN B 124 1 41 HELIX 22 AC4 ASP B 132 LYS B 169 1 38 HELIX 23 AC5 ASP B 182 ALA B 186 5 5 HELIX 24 AC6 GLY B 204 LEU B 212 1 9 HELIX 25 AC7 GLY B 233 ARG B 253 1 21 HELIX 26 AC8 ARG B 265 CYS B 272 1 8 HELIX 27 AC9 ALA B 300 MET B 309 1 10 HELIX 28 AD1 GLY B 360 LEU B 382 1 23 HELIX 29 AD2 PRO B 392 GLY B 397 1 6 HELIX 30 AD3 ASP B 427 HIS B 434 1 8 HELIX 31 AD4 VAL B 457 ASN B 468 1 12 HELIX 32 AD5 PRO B 478 ALA B 480 5 3 HELIX 33 AD6 LEU B 481 GLY B 486 1 6 SHEET 1 AA110 ARG A 187 VAL A 192 0 SHEET 2 AA110 PHE A 386 ASP A 390 -1 O VAL A 388 N HIS A 190 SHEET 3 AA110 ARG A 402 MET A 410 -1 O ASP A 405 N LEU A 389 SHEET 4 AA110 ARG A 415 THR A 426 -1 O ALA A 422 N PHE A 404 SHEET 5 AA110 HIS A 448 ALA A 456 -1 O ASN A 451 N SER A 423 SHEET 6 AA110 HIS A 347 THR A 357 -1 N MET A 353 O ALA A 452 SHEET 7 AA110 VAL A 320 TYR A 329 -1 N CYS A 328 O PHE A 348 SHEET 8 AA110 THR A 256 THR A 259 1 N THR A 256 O VAL A 323 SHEET 9 AA110 TYR B 230 ARG B 232 -1 O LEU B 231 N THR A 259 SHEET 10 AA110 ILE B 215 ARG B 216 -1 N ARG B 216 O TYR B 230 SHEET 1 AA210 ILE A 215 ARG A 216 0 SHEET 2 AA210 TYR A 230 ARG A 232 -1 O TYR A 230 N ARG A 216 SHEET 3 AA210 THR B 256 THR B 259 -1 O THR B 259 N LEU A 231 SHEET 4 AA210 VAL B 320 TYR B 329 1 O ARG B 321 N THR B 256 SHEET 5 AA210 HIS B 347 THR B 357 -1 O PHE B 348 N CYS B 328 SHEET 6 AA210 HIS B 448 ALA B 456 -1 O ALA B 452 N MET B 353 SHEET 7 AA210 ARG B 415 ASN B 424 -1 N SER B 423 O ASN B 451 SHEET 8 AA210 ARG B 402 MET B 410 -1 N PHE B 404 O ALA B 422 SHEET 9 AA210 PHE B 386 ASP B 390 -1 N ARG B 387 O GLU B 407 SHEET 10 AA210 ARG B 187 VAL B 192 -1 N ARG B 187 O ASP B 390 SHEET 1 AA3 2 LEU A 263 LEU A 264 0 SHEET 2 AA3 2 ASN A 295 LEU A 296 -1 O ASN A 295 N LEU A 264 SHEET 1 AA4 4 LEU A 444 PHE A 446 0 SHEET 2 AA4 4 ILE A 435 GLN A 438 -1 N PHE A 437 O GLN A 445 SHEET 3 AA4 4 HIS A 311 ALA A 314 1 N HIS A 311 O MET A 436 SHEET 4 AA4 4 GLN B 499 TYR B 500 -1 O GLN B 499 N THR A 312 SHEET 1 AA5 2 VAL A 475 LEU A 476 0 SHEET 2 AA5 2 ARG A 489 ILE A 490 -1 O ILE A 490 N VAL A 475 SHEET 1 AA6 4 GLN A 499 TYR A 500 0 SHEET 2 AA6 4 HIS B 311 ALA B 314 -1 O THR B 312 N GLN A 499 SHEET 3 AA6 4 ILE B 435 GLN B 438 1 O GLN B 438 N VAL B 313 SHEET 4 AA6 4 LEU B 444 PHE B 446 -1 O GLN B 445 N PHE B 437 SHEET 1 AA7 2 LEU B 263 LEU B 264 0 SHEET 2 AA7 2 ASN B 295 LEU B 296 -1 O ASN B 295 N LEU B 264 SHEET 1 AA8 2 VAL B 475 LEU B 476 0 SHEET 2 AA8 2 ARG B 489 ILE B 490 -1 O ILE B 490 N VAL B 475 CISPEP 1 LEU A 318 PRO A 319 0 -0.07 CISPEP 2 LEU B 318 PRO B 319 0 -9.99 CRYST1 150.590 150.590 142.470 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006641 0.003834 0.000000 0.00000 SCALE2 0.000000 0.007668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007019 0.00000