HEADER IMMUNOSUPPRESSANT 15-FEB-22 7TZE TITLE STRUCTURE OF MURINE LAG3 DOMAINS 1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYMPHOCYTE ACTIVATION GENE 3 PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 SYNONYM: LAG-3,ACTIVATION-INDUCED CYTIDINE DEAMINASE-LINKED COMPND 6 AUTOIMMUNITY PROTEIN,AIDA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LAG3; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS IMMUNE CHECKPOINT, T CELL, IG-LIKE FOLD, IMMUNOSUPPRESSANT EXPDTA X-RAY DIFFRACTION AUTHOR Q.MING,T.H.TRAN,V.C.LUCA REVDAT 5 18-OCT-23 7TZE 1 REMARK REVDAT 4 27-JUL-22 7TZE 1 JRNL REVDAT 3 13-JUL-22 7TZE 1 JRNL REVDAT 2 18-MAY-22 7TZE 1 TITLE REVDAT 1 11-MAY-22 7TZE 0 JRNL AUTH Q.MING,D.P.CELIAS,C.WU,A.R.COLE,S.SINGH,C.MASON,S.DONG, JRNL AUTH 2 T.H.TRAN,G.K.AMARASINGHE,B.RUFFELL,V.C.LUCA JRNL TITL LAG3 ECTODOMAIN STRUCTURE REVEALS FUNCTIONAL INTERFACES FOR JRNL TITL 2 LIGAND AND ANTIBODY RECOGNITION. JRNL REF NAT.IMMUNOL. V. 23 1031 2022 JRNL REFN ESSN 1529-2916 JRNL PMID 35761082 JRNL DOI 10.1038/S41590-022-01238-7 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2700 - 4.7000 0.98 2653 126 0.1730 0.1605 REMARK 3 2 4.7000 - 3.7300 0.99 2638 122 0.1623 0.1858 REMARK 3 3 3.7300 - 3.2600 0.97 2515 163 0.1965 0.2411 REMARK 3 4 3.2600 - 2.9600 0.99 2619 133 0.2323 0.2797 REMARK 3 5 2.9600 - 2.7500 0.99 2561 167 0.2516 0.2678 REMARK 3 6 2.7500 - 2.5900 0.99 2600 141 0.2773 0.3192 REMARK 3 7 2.5900 - 2.4600 0.96 2539 133 0.2917 0.3401 REMARK 3 8 2.4600 - 2.3500 0.98 2560 115 0.3028 0.3277 REMARK 3 9 2.3500 - 2.2600 0.99 2580 139 0.3344 0.3670 REMARK 3 10 2.2600 - 2.1800 0.99 2604 135 0.3546 0.3539 REMARK 3 11 2.1800 - 2.1200 0.99 2560 141 0.3789 0.4196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4885 33.0358 36.4481 REMARK 3 T TENSOR REMARK 3 T11: 0.5556 T22: 0.6796 REMARK 3 T33: 0.5717 T12: 0.0426 REMARK 3 T13: 0.0543 T23: -0.1680 REMARK 3 L TENSOR REMARK 3 L11: 4.2418 L22: 8.0924 REMARK 3 L33: 6.2217 L12: 3.4459 REMARK 3 L13: 3.6015 L23: 5.4183 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: -0.3290 S13: 0.3071 REMARK 3 S21: -0.5172 S22: -0.2120 S23: 0.3355 REMARK 3 S31: -0.2600 S32: -0.2335 S33: 0.1823 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2986 4.0885 22.9225 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.4954 REMARK 3 T33: 0.3496 T12: 0.0587 REMARK 3 T13: 0.0320 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 4.8815 L22: 6.3575 REMARK 3 L33: 5.2125 L12: 1.4554 REMARK 3 L13: 1.6790 L23: 0.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: -0.6042 S13: -0.2311 REMARK 3 S21: 0.1881 S22: 0.0101 S23: 0.0162 REMARK 3 S31: -0.1455 S32: -0.2612 S33: 0.0800 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 27 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0565 21.6454 -9.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.3629 REMARK 3 T33: 0.7983 T12: -0.0575 REMARK 3 T13: 0.0050 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 4.4088 L22: 7.6996 REMARK 3 L33: 7.0354 L12: -2.5408 REMARK 3 L13: 0.2283 L23: -1.6313 REMARK 3 S TENSOR REMARK 3 S11: 0.2834 S12: 0.4190 S13: -0.7407 REMARK 3 S21: -0.4295 S22: -0.0615 S23: 0.9523 REMARK 3 S31: 0.6664 S32: -0.6595 S33: -0.1966 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 67 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5368 36.0169 0.8314 REMARK 3 T TENSOR REMARK 3 T11: 0.6596 T22: 0.4866 REMARK 3 T33: 0.6740 T12: -0.0486 REMARK 3 T13: 0.0519 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 8.5861 L22: 3.0865 REMARK 3 L33: 9.4877 L12: -1.3217 REMARK 3 L13: 4.3872 L23: -1.0226 REMARK 3 S TENSOR REMARK 3 S11: -0.4159 S12: -1.2653 S13: 0.6565 REMARK 3 S21: 0.8385 S22: 0.2066 S23: -0.1966 REMARK 3 S31: -1.1558 S32: 0.8546 S33: 0.3529 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 101 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5905 31.5465 -20.6327 REMARK 3 T TENSOR REMARK 3 T11: 1.0218 T22: 1.0859 REMARK 3 T33: 1.3959 T12: 0.0225 REMARK 3 T13: -0.0024 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.1986 L22: 4.2889 REMARK 3 L33: 2.1916 L12: -2.4702 REMARK 3 L13: 1.6059 L23: -3.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.3392 S12: 1.6210 S13: 0.1261 REMARK 3 S21: -0.6836 S22: 0.3646 S23: 0.0994 REMARK 3 S31: -0.5706 S32: 0.3613 S33: 0.1752 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 116 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.9508 24.1539 -9.2877 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.3076 REMARK 3 T33: 0.7095 T12: -0.0266 REMARK 3 T13: 0.0579 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 6.3388 L22: 6.4131 REMARK 3 L33: 6.5023 L12: -2.5120 REMARK 3 L13: 2.2937 L23: -0.7264 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.4316 S13: -0.6626 REMARK 3 S21: -0.3119 S22: -0.0193 S23: 0.1358 REMARK 3 S31: -0.0965 S32: -0.1531 S33: -0.1099 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 164 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7989 0.9720 2.5114 REMARK 3 T TENSOR REMARK 3 T11: 0.3497 T22: 0.2386 REMARK 3 T33: 0.4116 T12: -0.0354 REMARK 3 T13: 0.0142 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 8.0924 L22: 3.9038 REMARK 3 L33: 2.2122 L12: -0.7873 REMARK 3 L13: 1.0682 L23: 0.2255 REMARK 3 S TENSOR REMARK 3 S11: -0.1735 S12: 0.4343 S13: -0.4294 REMARK 3 S21: -0.0408 S22: 0.1413 S23: -0.0198 REMARK 3 S31: 0.0466 S32: 0.1074 S33: -0.0308 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 28 THROUGH 106 OR REMARK 3 (RESID 107 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 108 REMARK 3 THROUGH 109 OR (RESID 110 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 111 THROUGH 254 OR RESID 1257 REMARK 3 THROUGH 1258)) REMARK 3 SELECTION : (CHAIN C AND (RESID 28 THROUGH 46 OR REMARK 3 (RESID 47 THROUGH 49 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 50 THROUGH 67 OR (RESID 68 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 175 OR REMARK 3 (RESID 176 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 177 REMARK 3 THROUGH 254 OR RESID 1257 THROUGH 1258)) REMARK 3 ATOM PAIRS NUMBER : 1262 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7TZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000262471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 40.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.846 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.98 REMARK 200 R MERGE FOR SHELL (I) : 1.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4L1D, 3B43 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.26700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 LYS A 27 REMARK 465 SER A 69 REMARK 465 GLY A 70 REMARK 465 GLN A 71 REMARK 465 PRO A 72 REMARK 465 THR A 73 REMARK 465 PRO A 74 REMARK 465 ILE A 75 REMARK 465 PRO A 76 REMARK 465 ALA A 77 REMARK 465 LEU A 78 REMARK 465 ASP A 79 REMARK 465 LEU A 80 REMARK 465 HIS A 81 REMARK 465 GLN A 82 REMARK 465 GLY A 83 REMARK 465 MET A 84 REMARK 465 PRO A 85 REMARK 465 SER A 86 REMARK 465 PRO A 87 REMARK 465 ARG A 88 REMARK 465 GLN A 89 REMARK 465 PRO A 90 REMARK 465 ALA A 91 REMARK 465 PRO A 92 REMARK 465 SER C 23 REMARK 465 GLY C 24 REMARK 465 PRO C 25 REMARK 465 GLY C 26 REMARK 465 PRO C 72 REMARK 465 THR C 73 REMARK 465 PRO C 74 REMARK 465 ILE C 75 REMARK 465 PRO C 76 REMARK 465 ALA C 77 REMARK 465 LEU C 78 REMARK 465 ASP C 79 REMARK 465 LEU C 80 REMARK 465 HIS C 81 REMARK 465 GLN C 82 REMARK 465 GLY C 83 REMARK 465 MET C 84 REMARK 465 PRO C 85 REMARK 465 SER C 86 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 SER A 48 OG REMARK 470 PRO A 49 CG CD REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LEU C 51 CG CD1 CD2 REMARK 470 GLN C 71 CG CD OE1 NE2 REMARK 470 SER C 107 OG REMARK 470 GLN C 110 CG CD OE1 NE2 REMARK 470 LEU C 112 CG CD1 CD2 REMARK 470 ARG C 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 125 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 78.86 -101.25 REMARK 500 GLU A 217 -117.48 49.55 REMARK 500 LEU C 51 -116.59 40.96 REMARK 500 GLU C 217 -117.82 50.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 7TZE A 23 254 UNP Q61790 LAG3_MOUSE 23 254 DBREF 7TZE C 23 254 UNP Q61790 LAG3_MOUSE 23 254 SEQRES 1 A 232 SER GLY PRO GLY LYS GLU LEU PRO VAL VAL TRP ALA GLN SEQRES 2 A 232 GLU GLY ALA PRO VAL HIS LEU PRO CYS SER LEU LYS SER SEQRES 3 A 232 PRO ASN LEU ASP PRO ASN PHE LEU ARG ARG GLY GLY VAL SEQRES 4 A 232 ILE TRP GLN HIS GLN PRO ASP SER GLY GLN PRO THR PRO SEQRES 5 A 232 ILE PRO ALA LEU ASP LEU HIS GLN GLY MET PRO SER PRO SEQRES 6 A 232 ARG GLN PRO ALA PRO GLY ARG TYR THR VAL LEU SER VAL SEQRES 7 A 232 ALA PRO GLY GLY LEU ARG SER GLY ARG GLN PRO LEU HIS SEQRES 8 A 232 PRO HIS VAL GLN LEU GLU GLU ARG GLY LEU GLN ARG GLY SEQRES 9 A 232 ASP PHE SER LEU TRP LEU ARG PRO ALA LEU ARG THR ASP SEQRES 10 A 232 ALA GLY GLU TYR HIS ALA THR VAL ARG LEU PRO ASN ARG SEQRES 11 A 232 ALA LEU SER CYS SER LEU ARG LEU ARG VAL GLY GLN ALA SEQRES 12 A 232 SER MET ILE ALA SER PRO SER GLY VAL LEU LYS LEU SER SEQRES 13 A 232 ASP TRP VAL LEU LEU ASN CYS SER PHE SER ARG PRO ASP SEQRES 14 A 232 ARG PRO VAL SER VAL HIS TRP PHE GLN GLY GLN ASN ARG SEQRES 15 A 232 VAL PRO VAL TYR ASN SER PRO ARG HIS PHE LEU ALA GLU SEQRES 16 A 232 THR PHE LEU LEU LEU PRO GLN VAL SER PRO LEU ASP SER SEQRES 17 A 232 GLY THR TRP GLY CYS VAL LEU THR TYR ARG ASP GLY PHE SEQRES 18 A 232 ASN VAL SER ILE THR TYR ASN LEU LYS VAL LEU SEQRES 1 C 232 SER GLY PRO GLY LYS GLU LEU PRO VAL VAL TRP ALA GLN SEQRES 2 C 232 GLU GLY ALA PRO VAL HIS LEU PRO CYS SER LEU LYS SER SEQRES 3 C 232 PRO ASN LEU ASP PRO ASN PHE LEU ARG ARG GLY GLY VAL SEQRES 4 C 232 ILE TRP GLN HIS GLN PRO ASP SER GLY GLN PRO THR PRO SEQRES 5 C 232 ILE PRO ALA LEU ASP LEU HIS GLN GLY MET PRO SER PRO SEQRES 6 C 232 ARG GLN PRO ALA PRO GLY ARG TYR THR VAL LEU SER VAL SEQRES 7 C 232 ALA PRO GLY GLY LEU ARG SER GLY ARG GLN PRO LEU HIS SEQRES 8 C 232 PRO HIS VAL GLN LEU GLU GLU ARG GLY LEU GLN ARG GLY SEQRES 9 C 232 ASP PHE SER LEU TRP LEU ARG PRO ALA LEU ARG THR ASP SEQRES 10 C 232 ALA GLY GLU TYR HIS ALA THR VAL ARG LEU PRO ASN ARG SEQRES 11 C 232 ALA LEU SER CYS SER LEU ARG LEU ARG VAL GLY GLN ALA SEQRES 12 C 232 SER MET ILE ALA SER PRO SER GLY VAL LEU LYS LEU SER SEQRES 13 C 232 ASP TRP VAL LEU LEU ASN CYS SER PHE SER ARG PRO ASP SEQRES 14 C 232 ARG PRO VAL SER VAL HIS TRP PHE GLN GLY GLN ASN ARG SEQRES 15 C 232 VAL PRO VAL TYR ASN SER PRO ARG HIS PHE LEU ALA GLU SEQRES 16 C 232 THR PHE LEU LEU LEU PRO GLN VAL SER PRO LEU ASP SER SEQRES 17 C 232 GLY THR TRP GLY CYS VAL LEU THR TYR ARG ASP GLY PHE SEQRES 18 C 232 ASN VAL SER ILE THR TYR ASN LEU LYS VAL LEU HET NAG A 301 14 HET NAG A 302 14 HET NAG C 301 14 HET NAG C 302 14 HET EDO C 303 4 HET EDO C 304 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 9 HOH *81(H2 O) HELIX 1 AA1 ASP A 52 ARG A 57 1 6 HELIX 2 AA2 GLU A 119 ARG A 125 1 7 HELIX 3 AA3 LEU A 136 ASP A 139 5 4 HELIX 4 AA4 SER A 226 SER A 230 5 5 HELIX 5 AA5 ASP C 52 ARG C 57 1 6 HELIX 6 AA6 GLY C 122 GLY C 126 5 5 HELIX 7 AA7 LEU C 136 ASP C 139 5 4 HELIX 8 AA8 SER C 226 SER C 230 5 5 SHEET 1 AA1 5 VAL A 31 GLN A 35 0 SHEET 2 AA1 5 ALA A 153 GLY A 163 1 O ARG A 159 N VAL A 32 SHEET 3 AA1 5 GLY A 141 ARG A 148 -1 N TYR A 143 O LEU A 158 SHEET 4 AA1 5 GLY A 60 PRO A 67 -1 N GLY A 60 O ARG A 148 SHEET 5 AA1 5 TYR A 95 VAL A 100 -1 O TYR A 95 N HIS A 65 SHEET 1 AA2 3 VAL A 40 LEU A 42 0 SHEET 2 AA2 3 LEU A 130 LEU A 132 -1 O LEU A 132 N VAL A 40 SHEET 3 AA2 3 VAL A 116 GLN A 117 -1 N GLN A 117 O TRP A 131 SHEET 1 AA3 4 ALA A 165 SER A 170 0 SHEET 2 AA3 4 VAL A 181 PHE A 187 -1 O SER A 186 N SER A 166 SHEET 3 AA3 4 PHE A 219 LEU A 222 -1 O LEU A 222 N VAL A 181 SHEET 4 AA3 4 PHE A 214 ALA A 216 -1 N PHE A 214 O LEU A 221 SHEET 1 AA4 2 LEU A 175 LYS A 176 0 SHEET 2 AA4 2 VAL A 253 LEU A 254 1 O LEU A 254 N LEU A 175 SHEET 1 AA5 4 VAL A 205 VAL A 207 0 SHEET 2 AA5 4 SER A 195 GLN A 200 -1 N GLN A 200 O VAL A 205 SHEET 3 AA5 4 GLY A 231 THR A 238 -1 O GLY A 234 N PHE A 199 SHEET 4 AA5 4 ASN A 244 LEU A 251 -1 O LEU A 251 N GLY A 231 SHEET 1 AA6 5 VAL C 31 GLN C 35 0 SHEET 2 AA6 5 ALA C 153 GLY C 163 1 O ARG C 159 N VAL C 32 SHEET 3 AA6 5 GLY C 141 ARG C 148 -1 N GLY C 141 O LEU C 160 SHEET 4 AA6 5 GLY C 60 PRO C 67 -1 N GLN C 66 O GLU C 142 SHEET 5 AA6 5 TYR C 95 VAL C 100 -1 O LEU C 98 N TRP C 63 SHEET 1 AA7 3 VAL C 40 LEU C 42 0 SHEET 2 AA7 3 LEU C 130 LEU C 132 -1 O LEU C 130 N LEU C 42 SHEET 3 AA7 3 VAL C 116 LEU C 118 -1 N GLN C 117 O TRP C 131 SHEET 1 AA8 4 ALA C 165 SER C 170 0 SHEET 2 AA8 4 VAL C 181 PHE C 187 -1 O LEU C 182 N SER C 170 SHEET 3 AA8 4 PHE C 219 LEU C 222 -1 O LEU C 222 N VAL C 181 SHEET 4 AA8 4 PHE C 214 ALA C 216 -1 N PHE C 214 O LEU C 221 SHEET 1 AA9 5 VAL C 174 LEU C 175 0 SHEET 2 AA9 5 ASN C 244 VAL C 253 1 O LYS C 252 N LEU C 175 SHEET 3 AA9 5 GLY C 231 THR C 238 -1 N TRP C 233 O TYR C 249 SHEET 4 AA9 5 SER C 195 GLN C 200 -1 N SER C 195 O THR C 238 SHEET 5 AA9 5 VAL C 205 VAL C 207 -1 O VAL C 207 N TRP C 198 SSBOND 1 CYS A 44 CYS A 156 1555 1555 2.03 SSBOND 2 CYS A 185 CYS A 235 1555 1555 2.02 SSBOND 3 CYS C 44 CYS C 156 1555 1555 1.97 SSBOND 4 CYS C 185 CYS C 235 1555 1555 2.05 LINK ND2 ASN A 184 C1 NAG A 301 1555 1555 1.44 LINK ND2 ASN A 244 C1 NAG A 302 1555 1555 1.44 LINK ND2 ASN C 184 C1 NAG C 301 1555 1555 1.45 LINK ND2 ASN C 244 C1 NAG C 302 1555 1555 1.43 CISPEP 1 SER A 170 PRO A 171 0 -6.75 CISPEP 2 SER C 170 PRO C 171 0 1.55 CRYST1 35.729 92.534 81.771 90.00 90.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027988 0.000000 0.000379 0.00000 SCALE2 0.000000 0.010807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012230 0.00000