HEADER VIRAL PROTEIN/IMMUNE SYSTEM 17-FEB-22 7U09 TITLE CRYSTAL STRUCTURE OF C13B8 FAB IN COMPLEX WITH SARS-COV-2 S FUSION TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN FAB C13B8; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN FAB C13B8; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SARS-COV-2 S FUSION PEPTIDE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 18 2; SOURCE 19 ORGANISM_TAXID: 2697049 KEYWDS SARS-COV-2 SPIKE, COVID-19, FUSION PEPTIDE, FAB, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.TORTORICI,D.VEESLER REVDAT 4 18-OCT-23 7U09 1 REMARK REVDAT 3 24-AUG-22 7U09 1 JRNL REVDAT 2 10-AUG-22 7U09 1 SOURCE REVDAT 1 03-AUG-22 7U09 0 JRNL AUTH J.S.LOW,J.JERAK,M.A.TORTORICI,M.MCCALLUM,D.PINTO,A.CASSOTTA, JRNL AUTH 2 M.FOGLIERINI,F.MELE,R.ABDELNABI,B.WEYNAND,J.NOACK, JRNL AUTH 3 M.MONTIEL-RUIZ,S.BIANCHI,F.BENIGNI,N.SPRUGASCI,A.JOSHI, JRNL AUTH 4 J.E.BOWEN,C.STEWART,M.REXHEPAJ,A.C.WALLS,D.JARROSSAY, JRNL AUTH 5 D.MORONE,P.PAPARODITIS,C.GARZONI,P.FERRARI,A.CESCHI,J.NEYTS, JRNL AUTH 6 L.A.PURCELL,G.SNELL,D.CORTI,A.LANZAVECCHIA,D.VEESLER, JRNL AUTH 7 F.SALLUSTO JRNL TITL ACE2-BINDING EXPOSES THE SARS-COV-2 FUSION PEPTIDE TO JRNL TITL 2 BROADLY NEUTRALIZING CORONAVIRUS ANTIBODIES. JRNL REF SCIENCE V. 377 735 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35857703 JRNL DOI 10.1126/SCIENCE.ABQ2679 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 26947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5900 - 4.5200 0.99 2765 144 0.1918 0.2103 REMARK 3 2 4.5200 - 3.5900 0.99 2608 137 0.1476 0.2012 REMARK 3 3 3.5900 - 3.1400 0.99 2583 137 0.1686 0.2235 REMARK 3 4 3.1400 - 2.8500 0.99 2555 140 0.1792 0.2315 REMARK 3 5 2.8500 - 2.6500 0.99 2538 145 0.1945 0.2595 REMARK 3 6 2.6500 - 2.4900 0.99 2552 112 0.2139 0.3227 REMARK 3 7 2.4900 - 2.3700 0.98 2499 144 0.2356 0.2801 REMARK 3 8 2.3700 - 2.2600 0.98 2510 121 0.2416 0.2728 REMARK 3 9 2.2600 - 2.1800 0.98 2491 144 0.2439 0.2599 REMARK 3 10 2.1800 - 2.1000 0.98 2487 135 0.2830 0.3617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0291 -24.7066 -70.4431 REMARK 3 T TENSOR REMARK 3 T11: 0.6345 T22: 0.2034 REMARK 3 T33: 0.3419 T12: -0.0160 REMARK 3 T13: -0.1425 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.8547 L22: 4.3570 REMARK 3 L33: 1.9820 L12: 0.4182 REMARK 3 L13: 0.5288 L23: -0.7024 REMARK 3 S TENSOR REMARK 3 S11: -0.4402 S12: 0.1585 S13: 0.4717 REMARK 3 S21: -0.1295 S22: 0.0392 S23: 0.0169 REMARK 3 S31: -1.3912 S32: 0.0644 S33: 0.2147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 110 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3220 -24.2355 -41.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.2941 REMARK 3 T33: 0.3223 T12: -0.0069 REMARK 3 T13: -0.0416 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.4359 L22: 5.1378 REMARK 3 L33: 3.7750 L12: -0.4888 REMARK 3 L13: 0.3813 L23: -0.2252 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: 0.0021 S13: -0.0018 REMARK 3 S21: -0.2872 S22: 0.0618 S23: -0.2381 REMARK 3 S31: -0.2202 S32: -0.1165 S33: 0.0280 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0323 -46.1943 -63.8321 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1315 REMARK 3 T33: 0.2027 T12: -0.0006 REMARK 3 T13: -0.0056 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 4.8481 L22: 0.9405 REMARK 3 L33: 2.7993 L12: 0.1781 REMARK 3 L13: 1.5634 L23: -0.3370 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.0150 S13: -0.0867 REMARK 3 S21: 0.0084 S22: 0.0608 S23: 0.0243 REMARK 3 S31: -0.0155 S32: -0.1548 S33: -0.0101 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 129 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6901 -34.6212 -37.5265 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.2663 REMARK 3 T33: 0.2590 T12: 0.0025 REMARK 3 T13: -0.0134 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 3.5524 L22: 3.4923 REMARK 3 L33: 3.7101 L12: -1.8956 REMARK 3 L13: -0.4895 L23: 1.8015 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.3403 S13: 0.2528 REMARK 3 S21: 0.2394 S22: 0.2535 S23: -0.1723 REMARK 3 S31: -0.0632 S32: 0.1756 S33: -0.1944 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 815 THROUGH 825) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9365 -38.5559 -77.7052 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2951 REMARK 3 T33: 0.2682 T12: -0.0312 REMARK 3 T13: -0.1110 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.6608 L22: 7.0600 REMARK 3 L33: 5.4740 L12: -1.6059 REMARK 3 L13: -3.7607 L23: -1.3503 REMARK 3 S TENSOR REMARK 3 S11: -0.4809 S12: 0.8009 S13: -0.0079 REMARK 3 S21: -0.8097 S22: 0.2938 S23: 0.8959 REMARK 3 S31: 0.3914 S32: -0.5803 S33: 0.1603 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1000263271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7R6W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M REMARK 280 SODIUM ACETATE: HCL, PH 4.6, 25.5 % (W/V) PEG 4000, 15 % (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.63450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.34700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.66150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.34700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.63450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.66150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 228 REMARK 465 CYS H 229 REMARK 465 SER L 1 REMARK 465 THR L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 PRO A 812 REMARK 465 SER A 813 REMARK 465 LYS A 814 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 142 CG CD CE NZ REMARK 470 LYS H 227 CG CD CE NZ REMARK 470 GLU L 3 CG CD OE1 OE2 REMARK 470 ARG L 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 29 CG CD CE NZ REMARK 470 GLU L 59 CG CD OE1 OE2 REMARK 470 GLN L 78 CG CD OE1 NE2 REMARK 470 LYS L 111 CG CD CE NZ REMARK 470 LYS L 157 CG CD CE NZ REMARK 470 LYS L 167 CG CD CE NZ REMARK 470 ARG L 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 815 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 314 O HOH H 444 2.14 REMARK 500 O HOH L 344 O HOH L 392 2.15 REMARK 500 O HOH H 399 O HOH A 904 2.15 REMARK 500 O HOH H 332 O HOH H 438 2.16 REMARK 500 O HOH H 305 O HOH H 433 2.16 REMARK 500 O HOH H 379 O HOH H 403 2.16 REMARK 500 O HOH H 317 O HOH H 420 2.17 REMARK 500 OE1 GLN H 16 O HOH H 301 2.18 REMARK 500 O HOH H 415 O HOH H 458 2.19 REMARK 500 O HOH H 405 O HOH H 457 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -0.15 76.79 REMARK 500 ASP H 157 72.29 60.42 REMARK 500 ASP L 50 -50.82 71.53 REMARK 500 SER L 89 -159.76 -149.80 REMARK 500 ASP L 152 -115.37 52.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 7U09 H 1 229 PDB 7U09 7U09 1 229 DBREF 7U09 L 1 213 PDB 7U09 7U09 1 213 DBREF 7U09 A 812 825 PDB 7U09 7U09 812 825 SEQRES 1 H 229 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL GLN SEQRES 2 H 229 PRO SER GLN THR LEU THR LEU THR CYS THR VAL SER GLY SEQRES 3 H 229 ASP SER ILE SER ASN GLU ASP TYR HIS TRP THR TRP ILE SEQRES 4 H 229 ARG GLN HIS PRO GLY LYS GLY LEU GLU TRP MET GLY TYR SEQRES 5 H 229 LEU GLN TYR SER GLY ASN THR ASN TYR ASN PRO SER LEU SEQRES 6 H 229 LYS SER ARG MET THR ILE SER VAL ASP THR SER LYS ASN SEQRES 7 H 229 GLN PHE SER LEU ARG LEU ASN SER VAL THR ALA ALA ASP SEQRES 8 H 229 THR ALA VAL TYR PHE CYS ALA THR SER ILE VAL LEU THR SEQRES 9 H 229 GLY MET SER ASN LYS ILE GLN PRO PHE ASP TYR TRP GLY SEQRES 10 H 229 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 229 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 229 LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 L 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SER SEQRES 2 L 213 PRO GLY GLN MET ALA ARG ILE THR CYS SER GLY GLU ALA SEQRES 3 L 213 LEU PRO LYS LYS TYR ALA TYR TRP TYR GLN GLN LYS GLY SEQRES 4 L 213 GLY GLN PHE PRO VAL LEU VAL ILE TYR LYS ASP THR GLU SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SER SEQRES 6 L 213 SER GLY THR ILE VAL THR LEU THR ILE SER GLY VAL GLN SEQRES 7 L 213 PRO GLU ASP GLU ALA ASP TYR TYR CYS LEU SER ALA ASP SEQRES 8 L 213 THR SER GLY THR TRP VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER SEQRES 1 A 14 PRO SER LYS ARG SER PHE ILE GLU ASP LEU LEU PHE ASN SEQRES 2 A 14 LYS FORMUL 4 HOH *279(H2 O) HELIX 1 AA1 THR H 88 THR H 92 5 5 HELIX 2 AA2 SER H 169 ALA H 171 5 3 HELIX 3 AA3 SER H 200 LEU H 202 5 3 HELIX 4 AA4 LYS H 214 ASN H 217 5 4 HELIX 5 AA5 GLN L 78 GLU L 82 5 5 HELIX 6 AA6 SER L 122 ALA L 128 1 7 HELIX 7 AA7 THR L 182 HIS L 189 1 8 HELIX 8 AA8 PHE A 817 PHE A 823 1 7 SHEET 1 AA1 4 GLN H 3 GLU H 6 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA1 4 GLN H 79 LEU H 84 -1 O LEU H 82 N LEU H 20 SHEET 4 AA1 4 MET H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 120 VAL H 124 1 O THR H 123 N GLY H 10 SHEET 3 AA2 6 ALA H 93 ILE H 101 -1 N TYR H 95 O THR H 120 SHEET 4 AA2 6 TYR H 34 GLN H 41 -1 N ILE H 39 O PHE H 96 SHEET 5 AA2 6 LEU H 47 LEU H 53 -1 O GLU H 48 N ARG H 40 SHEET 6 AA2 6 THR H 59 TYR H 61 -1 O ASN H 60 N TYR H 52 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 120 VAL H 124 1 O THR H 123 N GLY H 10 SHEET 3 AA3 4 ALA H 93 ILE H 101 -1 N TYR H 95 O THR H 120 SHEET 4 AA3 4 TYR H 115 TRP H 116 -1 O TYR H 115 N THR H 99 SHEET 1 AA4 4 SER H 133 LEU H 137 0 SHEET 2 AA4 4 THR H 148 TYR H 158 -1 O LYS H 156 N SER H 133 SHEET 3 AA4 4 TYR H 189 PRO H 198 -1 O TYR H 189 N TYR H 158 SHEET 4 AA4 4 VAL H 176 HIS H 177 -1 N HIS H 177 O VAL H 194 SHEET 1 AA5 4 THR H 144 SER H 145 0 SHEET 2 AA5 4 THR H 148 TYR H 158 -1 O THR H 148 N SER H 145 SHEET 3 AA5 4 TYR H 189 PRO H 198 -1 O TYR H 189 N TYR H 158 SHEET 4 AA5 4 VAL H 182 LEU H 183 -1 N VAL H 182 O SER H 190 SHEET 1 AA6 3 THR H 164 TRP H 167 0 SHEET 2 AA6 3 ILE H 208 HIS H 213 -1 O ASN H 210 N SER H 166 SHEET 3 AA6 3 THR H 218 ARG H 223 -1 O VAL H 220 N VAL H 211 SHEET 1 AA7 5 SER L 9 VAL L 12 0 SHEET 2 AA7 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 12 SHEET 3 AA7 5 ALA L 83 ALA L 90 -1 N ALA L 83 O LEU L 104 SHEET 4 AA7 5 TYR L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 AA7 5 VAL L 44 ILE L 47 -1 O VAL L 44 N GLN L 36 SHEET 1 AA8 4 SER L 9 VAL L 12 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 12 SHEET 3 AA8 4 ALA L 83 ALA L 90 -1 N ALA L 83 O LEU L 104 SHEET 4 AA8 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 89 SHEET 1 AA9 3 ALA L 18 SER L 23 0 SHEET 2 AA9 3 ILE L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 3 AA9 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB1 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB1 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB2 4 SER L 115 PHE L 119 0 SHEET 2 AB2 4 ALA L 131 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB2 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 AB2 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB3 4 SER L 154 VAL L 156 0 SHEET 2 AB3 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB3 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB3 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS H 22 CYS H 97 1555 1555 2.08 SSBOND 2 CYS H 153 CYS H 209 1555 1555 2.04 SSBOND 3 CYS L 22 CYS L 87 1555 1555 2.05 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.05 CISPEP 1 PHE H 159 PRO H 160 0 -5.31 CISPEP 2 GLU H 161 PRO H 162 0 0.22 CISPEP 3 TYR L 141 PRO L 142 0 2.23 CRYST1 43.269 69.323 150.694 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006636 0.00000