HEADER PROTEIN FIBRIL 19-FEB-22 7U0Z TITLE HIGH-RESOLUTION MAP OF TAU FILAMENT FROM PROGRESSIVE SUPRANUCLEAR TITLE 2 PALSY (PSP) CASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM TAU-E OF MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: B, C, A; COMPND 4 FRAGMENT: UNP RESIDUES 243-352; COMPND 5 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 6 PHF-TAU; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPT, MAPTL, MTBT1, TAU; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TAU PROTEIN, AMYLOID FIBRIL, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR A.W.P.FITZPATRICK,M.H.B.STOWELL,A.CHANG,X.XIANG,J.WANG,C.LEE, AUTHOR 2 T.ARAKHAMIA,M.SIMJANOSKA,C.WANG,Y.CARLOMAGNO,G.ZHANG,S.DHINGRA, AUTHOR 3 M.THIERRY,J.PERNEEL,B.HEEMAN,L.M.FORGRAVE,M.DETURE,M.L.DEMARCO, AUTHOR 4 C.N.COOK,R.RADEMAKERS,D.DICKSON,L.PETRUCELLI,I.R.A.MACKENZIE REVDAT 3 21-FEB-24 7U0Z 1 REMARK REVDAT 2 27-APR-22 7U0Z 1 JRNL REVDAT 1 23-MAR-22 7U0Z 0 JRNL AUTH A.CHANG,X.XIANG,J.WANG,C.LEE,T.ARAKHAMIA,M.SIMJANOSKA, JRNL AUTH 2 C.WANG,Y.CARLOMAGNO,G.ZHANG,S.DHINGRA,M.THIERRY,J.PERNEEL, JRNL AUTH 3 B.HEEMAN,L.M.FORGRAVE,M.DETURE,M.L.DEMARCO,C.N.COOK, JRNL AUTH 4 R.RADEMAKERS,D.W.DICKSON,L.PETRUCELLI,M.H.B.STOWELL, JRNL AUTH 5 I.R.A.MACKENZIE,A.W.P.FITZPATRICK JRNL TITL HOMOTYPIC FIBRILLIZATION OF TMEM106B ACROSS DIVERSE JRNL TITL 2 NEURODEGENERATIVE DISEASES. JRNL REF CELL V. 185 1346 2022 JRNL REFN ISSN 1097-4172 JRNL PMID 35247328 JRNL DOI 10.1016/J.CELL.2022.02.026 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.200 REMARK 3 NUMBER OF PARTICLES : 38000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7U0Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263341. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TMEM106B(120-254) SINGLET REMARK 245 AMYLOID FIBRIL FROM DEMENTIA REMARK 245 WITH LEWY BODIES (DLB) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = -0.86 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 4.78 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 288 OG SER A 320 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 338 51.94 35.38 REMARK 500 GLU C 338 52.00 35.34 REMARK 500 GLU A 338 51.93 35.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26268 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-26273 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-26274 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-26275 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-26276 RELATED DB: EMDB DBREF 7U0Z B 272 381 UNP P10636 TAU_HUMAN 243 352 DBREF 7U0Z C 272 381 UNP P10636 TAU_HUMAN 243 352 DBREF 7U0Z A 272 381 UNP P10636 TAU_HUMAN 243 352 SEQRES 1 B 110 GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SEQRES 2 B 110 SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE SEQRES 3 B 110 LYS HIS VAL PRO GLY GLY GLY SER VAL GLN ILE VAL TYR SEQRES 4 B 110 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 5 B 110 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 6 B 110 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 7 B 110 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 8 B 110 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 9 B 110 LEU THR PHE ARG GLU ASN SEQRES 1 C 110 GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SEQRES 2 C 110 SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE SEQRES 3 C 110 LYS HIS VAL PRO GLY GLY GLY SER VAL GLN ILE VAL TYR SEQRES 4 C 110 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 5 C 110 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 6 C 110 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 7 C 110 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 8 C 110 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 9 C 110 LEU THR PHE ARG GLU ASN SEQRES 1 A 110 GLY GLY LYS VAL GLN ILE ILE ASN LYS LYS LEU ASP LEU SEQRES 2 A 110 SER ASN VAL GLN SER LYS CYS GLY SER LYS ASP ASN ILE SEQRES 3 A 110 LYS HIS VAL PRO GLY GLY GLY SER VAL GLN ILE VAL TYR SEQRES 4 A 110 LYS PRO VAL ASP LEU SER LYS VAL THR SER LYS CYS GLY SEQRES 5 A 110 SER LEU GLY ASN ILE HIS HIS LYS PRO GLY GLY GLY GLN SEQRES 6 A 110 VAL GLU VAL LYS SER GLU LYS LEU ASP PHE LYS ASP ARG SEQRES 7 A 110 VAL GLN SER LYS ILE GLY SER LEU ASP ASN ILE THR HIS SEQRES 8 A 110 VAL PRO GLY GLY GLY ASN LYS LYS ILE GLU THR HIS LYS SEQRES 9 A 110 LEU THR PHE ARG GLU ASN SHEET 1 AA1 3 VAL C 275 ILE C 278 0 SHEET 2 AA1 3 VAL B 275 ILE B 278 1 N ILE B 278 O ILE C 277 SHEET 3 AA1 3 VAL A 275 ILE A 278 1 O ILE A 278 N ILE B 277 SHEET 1 AA2 3 LEU C 284 VAL C 287 0 SHEET 2 AA2 3 LEU B 284 VAL B 287 1 N VAL B 287 O ASN C 286 SHEET 3 AA2 3 LEU A 284 VAL A 287 1 O VAL A 287 N ASN B 286 SHEET 1 AA3 3 LYS C 294 HIS C 299 0 SHEET 2 AA3 3 LYS B 294 HIS B 299 1 N LYS B 298 O ILE C 297 SHEET 3 AA3 3 LYS A 294 HIS A 299 1 O LYS A 298 N ILE B 297 SHEET 1 AA4 3 GLN C 307 TYR C 310 0 SHEET 2 AA4 3 GLN B 307 TYR B 310 1 N VAL B 309 O ILE C 308 SHEET 3 AA4 3 GLN A 307 TYR A 310 1 O VAL A 309 N ILE B 308 SHEET 1 AA5 3 VAL C 313 ASP C 314 0 SHEET 2 AA5 3 VAL B 313 ASP B 314 1 N VAL B 313 O ASP C 314 SHEET 3 AA5 3 VAL A 313 ASP A 314 1 O VAL A 313 N ASP B 314 SHEET 1 AA6 3 LYS C 317 CYS C 322 0 SHEET 2 AA6 3 LYS B 317 CYS B 322 1 N THR B 319 O SER C 320 SHEET 3 AA6 3 LYS A 317 CYS A 322 1 O THR A 319 N SER B 320 SHEET 1 AA7 3 ILE C 328 HIS C 330 0 SHEET 2 AA7 3 ILE B 328 HIS B 330 1 N HIS B 329 O HIS C 330 SHEET 3 AA7 3 ILE A 328 HIS A 330 1 O HIS A 329 N HIS B 330 SHEET 1 AA8 3 LYS C 340 ASP C 345 0 SHEET 2 AA8 3 LYS B 340 ASP B 345 1 N LEU B 344 O ASP C 345 SHEET 3 AA8 3 LYS A 340 ASP A 345 1 O LEU A 344 N ASP B 345 SHEET 1 AA9 3 ASP C 348 ILE C 354 0 SHEET 2 AA9 3 ASP B 348 ILE B 354 1 N SER B 352 O LYS C 353 SHEET 3 AA9 3 ASP A 348 ILE A 354 1 O SER A 352 N LYS B 353 SHEET 1 AB1 3 LEU C 357 ILE C 360 0 SHEET 2 AB1 3 LEU B 357 ILE B 360 1 N LEU B 357 O ASP C 358 SHEET 3 AB1 3 LEU A 357 ILE A 360 1 O LEU A 357 N ASP B 358 SHEET 1 AB2 3 ASN C 368 THR C 373 0 SHEET 2 AB2 3 ASN B 368 THR B 373 1 N THR B 373 O GLU C 372 SHEET 3 AB2 3 ASN A 368 THR A 373 1 O THR A 373 N GLU B 372 SHEET 1 AB3 3 LEU C 376 ARG C 379 0 SHEET 2 AB3 3 LEU B 376 ARG B 379 1 N PHE B 378 O THR C 377 SHEET 3 AB3 3 LEU A 376 ARG A 379 1 O PHE A 378 N THR B 377 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000