HEADER TRANSFERASE/INHIBITOR 21-FEB-22 7U1M TITLE CRYSTAL STRUCTURE OF NTMT1 IN COMPLEX WITH COMPOUND YD206 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-TERMINAL XAA-PRO-LYS N-METHYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA N-TERMINAL PROTEIN METHYLTRANSFERASE 1A, COMPND 5 METHYLTRANSFERASE-LIKE PROTEIN 11A,N-TERMINAL RCC1 METHYLTRANSFERASE, COMPND 6 X-PRO-LYS N-TERMINAL PROTEIN METHYLTRANSFERASE 1A,NTM1A; COMPND 7 EC: 2.1.1.244; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTMT1, C9ORF32, METTL11A, NRMT, NRMT1, AD-003; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, ENZYME, INHIBITOR COMPLEX, TRANSFERASE, KEYWDS 2 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.YADAV,N.NOINAJ REVDAT 2 25-OCT-23 7U1M 1 REMARK REVDAT 1 14-DEC-22 7U1M 0 JRNL AUTH G.DONG,Y.DENG,A.YASGAR,R.YADAV,D.TALLEY,A.V.ZAKHAROV,S.JAIN, JRNL AUTH 2 G.RAI,N.NOINAJ,A.SIMEONOV,R.HUANG JRNL TITL VENGLUSTAT INHIBITS PROTEIN N-TERMINAL METHYLTRANSFERASE 1 JRNL TITL 2 IN A SUBSTRATE-COMPETITIVE MANNER. JRNL REF J.MED.CHEM. V. 65 12334 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36074125 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01050 REMARK 2 REMARK 2 RESOLUTION. 3.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC1_3777 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 10530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8000 - 6.3400 0.98 1226 133 0.1711 0.1994 REMARK 3 2 6.3400 - 5.0300 0.99 1225 141 0.2469 0.2637 REMARK 3 3 5.0300 - 4.4000 0.99 1213 133 0.2425 0.2748 REMARK 3 4 4.4000 - 4.0000 0.99 1214 139 0.2805 0.3557 REMARK 3 5 4.0000 - 3.7100 0.99 1205 135 0.3715 0.3923 REMARK 3 6 3.7100 - 3.4900 1.00 1217 139 0.3975 0.4183 REMARK 3 7 3.4900 - 3.3200 1.00 1232 134 0.4214 0.4846 REMARK 3 8 3.3200 - 3.1700 0.77 941 103 0.4702 0.4694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.670 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 148.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 3 THROUGH 5 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 6 OR (RESID 7 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 8 THROUGH 14 OR REMARK 3 (RESID 15 THROUGH 16 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 17 THROUGH 38 OR RESID 40 THROUGH REMARK 3 41 OR (RESID 42 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 43 THROUGH 46 OR (RESID 47 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 48 THROUGH 49 OR (RESID 50 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 51 THROUGH 53 OR REMARK 3 (RESID 54 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 55 REMARK 3 THROUGH 88 OR (RESID 89 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 90 THROUGH 100 OR RESID 102 REMARK 3 THROUGH 124 OR RESID 126 THROUGH 177 OR REMARK 3 RESID 179 THROUGH 301 OR RESID 401)) REMARK 3 SELECTION : (CHAIN B AND (RESID 3 THROUGH 9 OR (RESID REMARK 3 10 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 11 THROUGH REMARK 3 38 OR RESID 40 THROUGH 58 OR (RESID 59 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 60 THROUGH 80 OR REMARK 3 (RESID 81 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 82 REMARK 3 THROUGH 100 OR RESID 102 THROUGH 105 OR REMARK 3 (RESID 106 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 107 REMARK 3 THROUGH 108 OR (RESID 109 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 110 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 177 OR RESID 179 THROUGH 301 OR REMARK 3 RESID 401)) REMARK 3 ATOM PAIRS NUMBER : 1947 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11983 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6PVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES:NAOH, PH 9.5 10% (W/V) PEG REMARK 280 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.33467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.16733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.75100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.58367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.91833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 LEU A -4 REMARK 465 VAL A -3 REMARK 465 PRO A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 2 REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 GLY B -5 REMARK 465 LEU B -4 REMARK 465 VAL B -3 REMARK 465 PRO B -2 REMARK 465 ARG B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 THR B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LEU A 81 CG CD1 CD2 REMARK 470 LYS A 101 CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ASP A 178 CG OD1 OD2 REMARK 470 SER B 3 OG REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 VAL B 5 CG1 CG2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 ILE B 42 CG1 CG2 CD1 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 MET B 89 CG SD CE REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 ASP B 178 OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 39 CA CB OG REMARK 480 LYS A 101 CA CB CG REMARK 480 ARG A 192 CZ REMARK 480 ARG B 192 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 92.65 59.98 REMARK 500 ALA A 70 -30.02 67.60 REMARK 500 LEU A 79 -60.89 -102.27 REMARK 500 VAL A 137 -18.14 -143.08 REMARK 500 ALA B 70 -150.85 159.75 REMARK 500 VAL B 137 -18.39 -143.48 REMARK 500 GLU B 208 -165.99 -109.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 7U1M A 2 223 UNP Q9BV86 NTM1A_HUMAN 2 223 DBREF 7U1M B 2 223 UNP Q9BV86 NTM1A_HUMAN 2 223 SEQADV 7U1M MET A -17 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY A -16 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER A -15 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER A -14 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -13 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -12 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -11 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -10 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -9 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS A -8 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER A -7 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER A -6 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY A -5 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M LEU A -4 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M VAL A -3 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M PRO A -2 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M ARG A -1 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY A 0 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER A 1 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M MET B -17 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY B -16 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER B -15 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER B -14 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -13 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -12 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -11 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -10 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -9 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M HIS B -8 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER B -7 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER B -6 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY B -5 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M LEU B -4 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M VAL B -3 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M PRO B -2 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M ARG B -1 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M GLY B 0 UNP Q9BV86 EXPRESSION TAG SEQADV 7U1M SER B 1 UNP Q9BV86 EXPRESSION TAG SEQRES 1 A 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 241 LEU VAL PRO ARG GLY SER THR SER GLU VAL ILE GLU ASP SEQRES 3 A 241 GLU LYS GLN PHE TYR SER LYS ALA LYS THR TYR TRP LYS SEQRES 4 A 241 GLN ILE PRO PRO THR VAL ASP GLY MET LEU GLY GLY TYR SEQRES 5 A 241 GLY HIS ILE SER SER ILE ASP ILE ASN SER SER ARG LYS SEQRES 6 A 241 PHE LEU GLN ARG PHE LEU ARG GLU GLY PRO ASN LYS THR SEQRES 7 A 241 GLY THR SER CYS ALA LEU ASP CYS GLY ALA GLY ILE GLY SEQRES 8 A 241 ARG ILE THR LYS ARG LEU LEU LEU PRO LEU PHE ARG GLU SEQRES 9 A 241 VAL ASP MET VAL ASP ILE THR GLU ASP PHE LEU VAL GLN SEQRES 10 A 241 ALA LYS THR TYR LEU GLY GLU GLU GLY LYS ARG VAL ARG SEQRES 11 A 241 ASN TYR PHE CYS CYS GLY LEU GLN ASP PHE THR PRO GLU SEQRES 12 A 241 PRO ASP SER TYR ASP VAL ILE TRP ILE GLN TRP VAL ILE SEQRES 13 A 241 GLY HIS LEU THR ASP GLN HIS LEU ALA GLU PHE LEU ARG SEQRES 14 A 241 ARG CYS LYS GLY SER LEU ARG PRO ASN GLY ILE ILE VAL SEQRES 15 A 241 ILE LYS ASP ASN MET ALA GLN GLU GLY VAL ILE LEU ASP SEQRES 16 A 241 ASP VAL ASP SER SER VAL CYS ARG ASP LEU ASP VAL VAL SEQRES 17 A 241 ARG ARG ILE ILE CYS SER ALA GLY LEU SER LEU LEU ALA SEQRES 18 A 241 GLU GLU ARG GLN GLU ASN LEU PRO ASP GLU ILE TYR HIS SEQRES 19 A 241 VAL TYR SER PHE ALA LEU ARG SEQRES 1 B 241 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 241 LEU VAL PRO ARG GLY SER THR SER GLU VAL ILE GLU ASP SEQRES 3 B 241 GLU LYS GLN PHE TYR SER LYS ALA LYS THR TYR TRP LYS SEQRES 4 B 241 GLN ILE PRO PRO THR VAL ASP GLY MET LEU GLY GLY TYR SEQRES 5 B 241 GLY HIS ILE SER SER ILE ASP ILE ASN SER SER ARG LYS SEQRES 6 B 241 PHE LEU GLN ARG PHE LEU ARG GLU GLY PRO ASN LYS THR SEQRES 7 B 241 GLY THR SER CYS ALA LEU ASP CYS GLY ALA GLY ILE GLY SEQRES 8 B 241 ARG ILE THR LYS ARG LEU LEU LEU PRO LEU PHE ARG GLU SEQRES 9 B 241 VAL ASP MET VAL ASP ILE THR GLU ASP PHE LEU VAL GLN SEQRES 10 B 241 ALA LYS THR TYR LEU GLY GLU GLU GLY LYS ARG VAL ARG SEQRES 11 B 241 ASN TYR PHE CYS CYS GLY LEU GLN ASP PHE THR PRO GLU SEQRES 12 B 241 PRO ASP SER TYR ASP VAL ILE TRP ILE GLN TRP VAL ILE SEQRES 13 B 241 GLY HIS LEU THR ASP GLN HIS LEU ALA GLU PHE LEU ARG SEQRES 14 B 241 ARG CYS LYS GLY SER LEU ARG PRO ASN GLY ILE ILE VAL SEQRES 15 B 241 ILE LYS ASP ASN MET ALA GLN GLU GLY VAL ILE LEU ASP SEQRES 16 B 241 ASP VAL ASP SER SER VAL CYS ARG ASP LEU ASP VAL VAL SEQRES 17 B 241 ARG ARG ILE ILE CYS SER ALA GLY LEU SER LEU LEU ALA SEQRES 18 B 241 GLU GLU ARG GLN GLU ASN LEU PRO ASP GLU ILE TYR HIS SEQRES 19 B 241 VAL TYR SER PHE ALA LEU ARG HET SAH A 301 26 HET KYF A 302 27 HET SAH B 301 26 HET KYF B 302 27 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM KYF (1R,3S,4R)-1-AZABICYCLO[2.2.2]OCTAN-3-YL {2-[2-(4- HETNAM 2 KYF FLUOROPHENYL)-1,3-THIAZOL-4-YL]PROPAN-2-YL}CARBAMATE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 KYF 2(C20 H24 F N3 O2 S) HELIX 1 AA1 ASP A 8 GLN A 22 1 15 HELIX 2 AA2 THR A 26 LEU A 31 1 6 HELIX 3 AA3 TYR A 34 HIS A 36 5 3 HELIX 4 AA4 ILE A 37 ARG A 54 1 18 HELIX 5 AA5 GLY A 73 LEU A 79 1 7 HELIX 6 AA6 LEU A 79 PHE A 84 1 6 HELIX 7 AA7 THR A 93 GLY A 105 1 13 HELIX 8 AA8 GLU A 106 LYS A 109 5 4 HELIX 9 AA9 VAL A 137 LEU A 141 5 5 HELIX 10 AB1 THR A 142 SER A 156 1 15 HELIX 11 AB2 ASP A 186 ALA A 197 1 12 HELIX 12 AB3 ASP B 8 GLN B 22 1 15 HELIX 13 AB4 THR B 26 LEU B 31 1 6 HELIX 14 AB5 TYR B 34 HIS B 36 5 3 HELIX 15 AB6 ILE B 37 ARG B 54 1 18 HELIX 16 AB7 GLY B 73 LEU B 79 1 7 HELIX 17 AB8 LEU B 79 PHE B 84 1 6 HELIX 18 AB9 THR B 93 LEU B 104 1 12 HELIX 19 AC1 GLU B 107 LYS B 109 5 3 HELIX 20 AC2 VAL B 137 LEU B 141 5 5 HELIX 21 AC3 THR B 142 GLY B 155 1 14 HELIX 22 AC4 LEU B 187 ALA B 197 1 11 SHEET 1 AA1 7 VAL A 111 CYS A 116 0 SHEET 2 AA1 7 GLU A 86 ASP A 91 1 N MET A 89 O PHE A 115 SHEET 3 AA1 7 CYS A 64 CYS A 68 1 N ASP A 67 O ASP A 88 SHEET 4 AA1 7 TYR A 129 GLN A 135 1 O TRP A 133 N CYS A 68 SHEET 5 AA1 7 LEU A 157 MET A 169 1 O LYS A 166 N ILE A 134 SHEET 6 AA1 7 HIS A 216 ARG A 223 -1 O LEU A 222 N ILE A 163 SHEET 7 AA1 7 SER A 200 ARG A 206 -1 N LEU A 202 O ALA A 221 SHEET 1 AA2 2 ILE A 175 ASP A 177 0 SHEET 2 AA2 2 SER A 182 CYS A 184 -1 O CYS A 184 N ILE A 175 SHEET 1 AA3 7 VAL B 111 CYS B 116 0 SHEET 2 AA3 7 GLU B 86 ASP B 91 1 N MET B 89 O PHE B 115 SHEET 3 AA3 7 CYS B 64 ASP B 67 1 N ASP B 67 O ASP B 88 SHEET 4 AA3 7 TYR B 129 GLN B 135 1 O ASP B 130 N CYS B 64 SHEET 5 AA3 7 LEU B 157 ALA B 170 1 O ARG B 158 N TYR B 129 SHEET 6 AA3 7 SER B 182 ASP B 186 1 O ARG B 185 N ALA B 170 SHEET 7 AA3 7 ILE B 175 ASP B 177 -1 N ASP B 177 O SER B 182 SHEET 1 AA4 7 VAL B 111 CYS B 116 0 SHEET 2 AA4 7 GLU B 86 ASP B 91 1 N MET B 89 O PHE B 115 SHEET 3 AA4 7 CYS B 64 ASP B 67 1 N ASP B 67 O ASP B 88 SHEET 4 AA4 7 TYR B 129 GLN B 135 1 O ASP B 130 N CYS B 64 SHEET 5 AA4 7 LEU B 157 ALA B 170 1 O ARG B 158 N TYR B 129 SHEET 6 AA4 7 HIS B 216 ARG B 223 -1 O LEU B 222 N ILE B 163 SHEET 7 AA4 7 SER B 200 ARG B 206 -1 N LEU B 202 O ALA B 221 SSBOND 1 CYS A 195 CYS B 195 1555 6554 2.03 CRYST1 89.609 89.609 141.502 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011160 0.006443 0.000000 0.00000 SCALE2 0.000000 0.012886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007067 0.00000