HEADER TOXIN 24-FEB-22 7U2P TITLE STRUCTURE OF TCDA GTD IN COMPLEX WITH RHOA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYLTRANSFERASE TCDA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 9 CHAIN: B; COMPND 10 EC: 3.6.5.2; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: TCDA, TOXA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: RHOA, ARHA, ARHA2; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTD, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.BAOHUA,L.ZHENG,P.KAY,J.RONGSHENG REVDAT 4 18-OCT-23 7U2P 1 REMARK REVDAT 3 08-JUN-22 7U2P 1 JRNL REVDAT 2 11-MAY-22 7U2P 1 TITLE REVDAT 1 04-MAY-22 7U2P 0 JRNL AUTH B.CHEN,Z.LIU,K.PERRY,R.JIN JRNL TITL STRUCTURE OF THE GLUCOSYLTRANSFERASE DOMAIN OF TCDA IN JRNL TITL 2 COMPLEX WITH RHOA PROVIDES INSIGHTS INTO SUBSTRATE JRNL TITL 3 RECOGNITION. JRNL REF SCI REP V. 12 9028 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 35637242 JRNL DOI 10.1038/S41598-022-12909-8 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.618 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.62800 REMARK 3 B22 (A**2) : -3.84900 REMARK 3 B33 (A**2) : -0.77900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.857 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5989 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8108 ; 1.109 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 719 ; 5.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;33.236 ;23.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1097 ;18.466 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;23.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 801 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4479 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2758 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4199 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.086 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2882 ; 3.156 ; 5.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3599 ; 4.849 ; 8.930 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3107 ; 3.813 ; 6.076 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4509 ; 5.514 ; 9.033 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7U2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263432. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.596 REMARK 200 RESOLUTION RANGE LOW (A) : 83.799 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1FTN, 3SRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES, PH REMARK 280 5.9, AND 10% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.73700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.73700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.32050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.39900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.32050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.39900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.73700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.32050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.39900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.73700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.32050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.39900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLN A 339 CG CD OE1 NE2 REMARK 470 GLN A 340 CG CD OE1 NE2 REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 TYR A 528 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -161.08 -120.51 REMARK 500 VAL A 198 105.60 -55.51 REMARK 500 ASP A 295 36.34 -154.85 REMARK 500 GLU A 363 -128.02 48.72 REMARK 500 ASN A 383 31.98 -91.59 REMARK 500 ASN A 422 -178.87 -64.17 REMARK 500 PRO A 451 46.68 -86.35 REMARK 500 ALA B 15 1.14 83.72 REMARK 500 PRO B 71 -5.69 -52.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 GLU A 514 OE1 83.8 REMARK 620 3 UPG A 601 O1A 86.7 140.7 REMARK 620 4 UPG A 601 O1B 172.5 102.2 85.8 REMARK 620 5 HOH A 704 O 89.0 73.8 68.0 88.4 REMARK 620 6 HOH A 707 O 99.9 72.2 147.2 86.3 143.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 19 OG1 REMARK 620 2 GDP B 201 O3B 73.1 REMARK 620 3 HOH B 301 O 60.9 90.8 REMARK 620 4 HOH B 307 O 76.3 86.4 135.9 REMARK 620 5 HOH B 309 O 151.5 99.0 92.6 131.3 REMARK 620 6 HOH B 310 O 103.4 159.0 70.1 113.3 74.0 REMARK 620 N 1 2 3 4 5 DBREF 7U2P A 1 542 UNP P16154 TCDA_CLODI 1 542 DBREF 7U2P B 1 181 UNP Q9QUI0 RHOA_MOUSE 1 181 SEQADV 7U2P SER A 0 UNP P16154 EXPRESSION TAG SEQADV 7U2P ALA A 190 UNP P16154 LYS 190 ENGINEERED MUTATION SEQADV 7U2P GLY B -4 UNP Q9QUI0 EXPRESSION TAG SEQADV 7U2P PRO B -3 UNP Q9QUI0 EXPRESSION TAG SEQADV 7U2P LEU B -2 UNP Q9QUI0 EXPRESSION TAG SEQADV 7U2P GLY B -1 UNP Q9QUI0 EXPRESSION TAG SEQADV 7U2P SER B 0 UNP Q9QUI0 EXPRESSION TAG SEQADV 7U2P ASN B 37 UNP Q9QUI0 THR 37 ENGINEERED MUTATION SEQRES 1 A 543 SER MET SER LEU ILE SER LYS GLU GLU LEU ILE LYS LEU SEQRES 2 A 543 ALA TYR SER ILE ARG PRO ARG GLU ASN GLU TYR LYS THR SEQRES 3 A 543 ILE LEU THR ASN LEU ASP GLU TYR ASN LYS LEU THR THR SEQRES 4 A 543 ASN ASN ASN GLU ASN LYS TYR LEU GLN LEU LYS LYS LEU SEQRES 5 A 543 ASN GLU SER ILE ASP VAL PHE MET ASN LYS TYR LYS THR SEQRES 6 A 543 SER SER ARG ASN ARG ALA LEU SER ASN LEU LYS LYS ASP SEQRES 7 A 543 ILE LEU LYS GLU VAL ILE LEU ILE LYS ASN SER ASN THR SEQRES 8 A 543 SER PRO VAL GLU LYS ASN LEU HIS PHE VAL TRP ILE GLY SEQRES 9 A 543 GLY GLU VAL SER ASP ILE ALA LEU GLU TYR ILE LYS GLN SEQRES 10 A 543 TRP ALA ASP ILE ASN ALA GLU TYR ASN ILE LYS LEU TRP SEQRES 11 A 543 TYR ASP SER GLU ALA PHE LEU VAL ASN THR LEU LYS LYS SEQRES 12 A 543 ALA ILE VAL GLU SER SER THR THR GLU ALA LEU GLN LEU SEQRES 13 A 543 LEU GLU GLU GLU ILE GLN ASN PRO GLN PHE ASP ASN MET SEQRES 14 A 543 LYS PHE TYR LYS LYS ARG MET GLU PHE ILE TYR ASP ARG SEQRES 15 A 543 GLN LYS ARG PHE ILE ASN TYR TYR ALA SER GLN ILE ASN SEQRES 16 A 543 LYS PRO THR VAL PRO THR ILE ASP ASP ILE ILE LYS SER SEQRES 17 A 543 HIS LEU VAL SER GLU TYR ASN ARG ASP GLU THR VAL LEU SEQRES 18 A 543 GLU SER TYR ARG THR ASN SER LEU ARG LYS ILE ASN SER SEQRES 19 A 543 ASN HIS GLY ILE ASP ILE ARG ALA ASN SER LEU PHE THR SEQRES 20 A 543 GLU GLN GLU LEU LEU ASN ILE TYR SER GLN GLU LEU LEU SEQRES 21 A 543 ASN ARG GLY ASN LEU ALA ALA ALA SER ASP ILE VAL ARG SEQRES 22 A 543 LEU LEU ALA LEU LYS ASN PHE GLY GLY VAL TYR LEU ASP SEQRES 23 A 543 VAL ASP MET LEU PRO GLY ILE HIS SER ASP LEU PHE LYS SEQRES 24 A 543 THR ILE SER ARG PRO SER SER ILE GLY LEU ASP ARG TRP SEQRES 25 A 543 GLU MET ILE LYS LEU GLU ALA ILE MET LYS TYR LYS LYS SEQRES 26 A 543 TYR ILE ASN ASN TYR THR SER GLU ASN PHE ASP LYS LEU SEQRES 27 A 543 ASP GLN GLN LEU LYS ASP ASN PHE LYS LEU ILE ILE GLU SEQRES 28 A 543 SER LYS SER GLU LYS SER GLU ILE PHE SER LYS LEU GLU SEQRES 29 A 543 ASN LEU ASN VAL SER ASP LEU GLU ILE LYS ILE ALA PHE SEQRES 30 A 543 ALA LEU GLY SER VAL ILE ASN GLN ALA LEU ILE SER LYS SEQRES 31 A 543 GLN GLY SER TYR LEU THR ASN LEU VAL ILE GLU GLN VAL SEQRES 32 A 543 LYS ASN ARG TYR GLN PHE LEU ASN GLN HIS LEU ASN PRO SEQRES 33 A 543 ALA ILE GLU SER ASP ASN ASN PHE THR ASP THR THR LYS SEQRES 34 A 543 ILE PHE HIS ASP SER LEU PHE ASN SER ALA THR ALA GLU SEQRES 35 A 543 ASN SER MET PHE LEU THR LYS ILE ALA PRO TYR LEU GLN SEQRES 36 A 543 VAL GLY PHE MET PRO GLU ALA ARG SER THR ILE SER LEU SEQRES 37 A 543 SER GLY PRO GLY ALA TYR ALA SER ALA TYR TYR ASP PHE SEQRES 38 A 543 ILE ASN LEU GLN GLU ASN THR ILE GLU LYS THR LEU LYS SEQRES 39 A 543 ALA SER ASP LEU ILE GLU PHE LYS PHE PRO GLU ASN ASN SEQRES 40 A 543 LEU SER GLN LEU THR GLU GLN GLU ILE ASN SER LEU TRP SEQRES 41 A 543 SER PHE ASP GLN ALA SER ALA LYS TYR GLN PHE GLU LYS SEQRES 42 A 543 TYR VAL ARG ASP TYR THR GLY GLY SER LEU SEQRES 1 B 186 GLY PRO LEU GLY SER MET ALA ALA ILE ARG LYS LYS LEU SEQRES 2 B 186 VAL ILE VAL GLY ASP GLY ALA CYS GLY LYS THR CYS LEU SEQRES 3 B 186 LEU ILE VAL PHE SER LYS ASP GLN PHE PRO GLU VAL TYR SEQRES 4 B 186 VAL PRO ASN VAL PHE GLU ASN TYR VAL ALA ASP ILE GLU SEQRES 5 B 186 VAL ASP GLY LYS GLN VAL GLU LEU ALA LEU TRP ASP THR SEQRES 6 B 186 ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER SEQRES 7 B 186 TYR PRO ASP THR ASP VAL ILE LEU MET CYS PHE SER ILE SEQRES 8 B 186 ASP SER PRO ASP SER LEU GLU ASN ILE PRO GLU LYS TRP SEQRES 9 B 186 THR PRO GLU VAL LYS HIS PHE CYS PRO ASN VAL PRO ILE SEQRES 10 B 186 ILE LEU VAL GLY ASN LYS LYS ASP LEU ARG ASN ASP GLU SEQRES 11 B 186 HIS THR ARG ARG GLU LEU ALA LYS MET LYS GLN GLU PRO SEQRES 12 B 186 VAL LYS PRO GLU GLU GLY ARG ASP MET ALA ASN ARG ILE SEQRES 13 B 186 GLY ALA PHE GLY TYR MET GLU CYS SER ALA LYS THR LYS SEQRES 14 B 186 ASP GLY VAL ARG GLU VAL PHE GLU MET ALA THR ARG ALA SEQRES 15 B 186 ALA LEU GLN ALA HET UPG A 601 36 HET MN A 602 1 HET SO4 A 603 5 HET GDP B 201 28 HET MG B 202 1 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 UPG C15 H24 N2 O17 P2 FORMUL 4 MN MN 2+ FORMUL 5 SO4 O4 S 2- FORMUL 6 GDP C10 H15 N5 O11 P2 FORMUL 7 MG MG 2+ FORMUL 8 HOH *52(H2 O) HELIX 1 AA1 SER A 5 ALA A 13 1 9 HELIX 2 AA2 GLU A 20 LYS A 35 1 16 HELIX 3 AA3 ASN A 40 TYR A 62 1 23 HELIX 4 AA4 ARG A 67 ASN A 89 1 23 HELIX 5 AA5 SER A 107 ASN A 121 1 15 HELIX 6 AA6 LEU A 136 LEU A 156 1 21 HELIX 7 AA7 ASP A 166 ILE A 193 1 28 HELIX 8 AA8 THR A 200 TYR A 213 1 14 HELIX 9 AA9 ASP A 216 SER A 233 1 18 HELIX 10 AB1 GLU A 247 LEU A 259 1 13 HELIX 11 AB2 ASN A 263 PHE A 279 1 17 HELIX 12 AB3 GLY A 307 LYS A 324 1 18 HELIX 13 AB4 SER A 331 LYS A 336 1 6 HELIX 14 AB5 ASP A 338 LYS A 352 1 15 HELIX 15 AB6 GLU A 354 ILE A 358 5 5 HELIX 16 AB7 SER A 392 SER A 419 1 28 HELIX 17 AB8 ASN A 422 SER A 437 1 16 HELIX 18 AB9 ASN A 442 ALA A 450 1 9 HELIX 19 AC1 PRO A 451 VAL A 455 5 5 HELIX 20 AC2 SER A 463 SER A 468 1 6 HELIX 21 AC3 GLY A 469 ASN A 482 1 14 HELIX 22 AC4 LYS A 493 ILE A 498 1 6 HELIX 23 AC5 GLU A 499 LYS A 501 5 3 HELIX 24 AC6 PRO A 503 LEU A 507 5 5 HELIX 25 AC7 ASP A 522 GLY A 540 1 19 HELIX 26 AC8 GLY B 17 ASP B 28 1 12 HELIX 27 AC9 GLN B 63 ASP B 67 5 5 HELIX 28 AD1 LEU B 69 SER B 73 5 5 HELIX 29 AD2 SER B 88 ILE B 95 1 8 HELIX 30 AD3 LYS B 98 CYS B 107 1 10 HELIX 31 AD4 LYS B 118 ARG B 122 5 5 HELIX 32 AD5 ASP B 124 LYS B 133 1 10 HELIX 33 AD6 LYS B 140 GLY B 152 1 13 HELIX 34 AD7 GLY B 166 GLN B 180 1 15 SHEET 1 AA1 2 SER A 91 PRO A 92 0 SHEET 2 AA1 2 ASN A 366 VAL A 367 -1 O VAL A 367 N SER A 91 SHEET 1 AA2 6 GLY A 236 ASP A 238 0 SHEET 2 AA2 6 ASN A 125 TYR A 130 1 N LEU A 128 O ILE A 237 SHEET 3 AA2 6 ASN A 96 VAL A 100 1 N LEU A 97 O ASN A 125 SHEET 4 AA2 6 GLY A 281 LEU A 284 1 O VAL A 282 N HIS A 98 SHEET 5 AA2 6 SER A 380 SER A 388 -1 O SER A 388 N GLY A 281 SHEET 6 AA2 6 ILE A 372 ALA A 377 -1 N ALA A 377 O SER A 380 SHEET 1 AA3 6 TYR B 42 VAL B 48 0 SHEET 2 AA3 6 LYS B 51 TRP B 58 -1 O VAL B 53 N ILE B 46 SHEET 3 AA3 6 ILE B 4 GLY B 12 1 N LEU B 8 O TRP B 58 SHEET 4 AA3 6 VAL B 79 SER B 85 1 O LEU B 81 N VAL B 11 SHEET 5 AA3 6 ILE B 112 ASN B 117 1 O ASN B 117 N PHE B 84 SHEET 6 AA3 6 GLY B 155 GLU B 158 1 O GLY B 155 N LEU B 114 LINK OD2 ASP A 287 MN MN A 602 1555 1555 2.09 LINK OE1 GLU A 514 MN MN A 602 1555 1555 1.92 LINK O1A UPG A 601 MN MN A 602 1555 1555 1.84 LINK O1B UPG A 601 MN MN A 602 1555 1555 1.90 LINK MN MN A 602 O HOH A 704 1555 1555 2.31 LINK MN MN A 602 O HOH A 707 1555 1555 2.11 LINK OG1 THR B 19 MG MG B 202 1555 1555 2.42 LINK O3B GDP B 201 MG MG B 202 1555 1555 1.89 LINK MG MG B 202 O HOH B 301 1555 1555 1.92 LINK MG MG B 202 O HOH B 307 1555 1555 2.00 LINK MG MG B 202 O HOH B 309 1555 1555 2.41 LINK MG MG B 202 O HOH B 310 1555 1555 2.40 CRYST1 114.641 122.798 127.474 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008723 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007845 0.00000