HEADER HYDROLASE 24-FEB-22 7U2R TITLE STRUCTURE OF PAENIBACILLUS SP. J14 APYC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APYC1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. J14; SOURCE 3 ORGANISM_TAXID: 935845; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-PYCSAR, NUCLEASE, IMMUNE EVASION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HOBBS,T.WEIN,A.LU,B.R.MOREHOUSE,J.SCHNABEL,R.SOREK,P.J.KRANZUSCH REVDAT 3 16-OCT-24 7U2R 1 REMARK REVDAT 2 01-JUN-22 7U2R 1 JRNL REVDAT 1 20-APR-22 7U2R 0 JRNL AUTH S.J.HOBBS,T.WEIN,A.LU,B.R.MOREHOUSE,J.SCHNABEL,A.LEAVITT, JRNL AUTH 2 E.YIRMIYA,R.SOREK,P.J.KRANZUSCH JRNL TITL PHAGE ANTI-CBASS AND ANTI-PYCSAR NUCLEASES SUBVERT BACTERIAL JRNL TITL 2 IMMUNITY. JRNL REF NATURE V. 605 522 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35395152 JRNL DOI 10.1038/S41586-022-04716-Y REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1400 - 4.4600 1.00 2958 156 0.1576 0.1670 REMARK 3 2 4.4600 - 3.5400 1.00 2792 148 0.1396 0.1719 REMARK 3 3 3.5400 - 3.0900 1.00 2743 145 0.1748 0.1980 REMARK 3 4 3.0900 - 2.8100 1.00 2727 143 0.1820 0.2009 REMARK 3 5 2.8100 - 2.6100 1.00 2707 143 0.1831 0.1994 REMARK 3 6 2.6100 - 2.4500 1.00 2696 143 0.1885 0.2212 REMARK 3 7 2.4500 - 2.3300 1.00 2684 142 0.1972 0.2257 REMARK 3 8 2.3300 - 2.2300 1.00 2663 141 0.1942 0.2283 REMARK 3 9 2.2300 - 2.1400 1.00 2658 140 0.2058 0.2331 REMARK 3 10 2.1400 - 2.0700 1.00 2681 141 0.1945 0.2318 REMARK 3 11 2.0700 - 2.0100 1.00 2658 141 0.2228 0.2455 REMARK 3 12 2.0100 - 1.9500 1.00 2646 139 0.2581 0.2516 REMARK 3 13 1.9500 - 1.9000 0.99 2644 140 0.2692 0.3364 REMARK 3 14 1.9000 - 1.8500 0.98 2611 138 0.2949 0.3205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1977 REMARK 3 ANGLE : 1.177 2675 REMARK 3 CHIRALITY : 0.073 302 REMARK 3 PLANARITY : 0.011 346 REMARK 3 DIHEDRAL : 14.211 737 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0395 55.1355 87.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.3882 T22: 0.2253 REMARK 3 T33: 0.2812 T12: -0.0064 REMARK 3 T13: -0.0732 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.7506 L22: 1.3213 REMARK 3 L33: 1.9249 L12: -0.5286 REMARK 3 L13: 0.8320 L23: -0.1661 REMARK 3 S TENSOR REMARK 3 S11: 0.3183 S12: 0.1756 S13: -0.2733 REMARK 3 S21: -0.2511 S22: -0.0152 S23: 0.1867 REMARK 3 S31: 0.5015 S32: -0.0497 S33: -0.1553 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2386 44.6111 83.9446 REMARK 3 T TENSOR REMARK 3 T11: 0.8025 T22: 0.1991 REMARK 3 T33: 0.4160 T12: 0.0656 REMARK 3 T13: -0.3507 T23: -0.3149 REMARK 3 L TENSOR REMARK 3 L11: 1.1088 L22: 1.9657 REMARK 3 L33: 2.4531 L12: -0.5092 REMARK 3 L13: 0.3231 L23: -0.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.7918 S12: 0.6989 S13: -1.1312 REMARK 3 S21: -0.5430 S22: 0.0148 S23: 0.5567 REMARK 3 S31: 1.2138 S32: -0.2520 S33: 1.3748 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8236 43.2202 89.2209 REMARK 3 T TENSOR REMARK 3 T11: 0.7455 T22: 0.5642 REMARK 3 T33: 0.5140 T12: 0.3940 REMARK 3 T13: -0.2073 T23: -0.3513 REMARK 3 L TENSOR REMARK 3 L11: 0.4640 L22: 2.0275 REMARK 3 L33: 1.1289 L12: 0.9100 REMARK 3 L13: 0.6634 L23: 1.4911 REMARK 3 S TENSOR REMARK 3 S11: 0.8307 S12: 0.5603 S13: -1.1085 REMARK 3 S21: -0.1968 S22: -0.0091 S23: -0.2564 REMARK 3 S31: 1.1356 S32: 0.5964 S33: 0.7022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0061 54.3686 90.9762 REMARK 3 T TENSOR REMARK 3 T11: 0.4237 T22: 0.5294 REMARK 3 T33: 0.3422 T12: 0.1730 REMARK 3 T13: -0.0096 T23: -0.1015 REMARK 3 L TENSOR REMARK 3 L11: 1.0901 L22: 1.6557 REMARK 3 L33: 0.3393 L12: 0.3184 REMARK 3 L13: 0.2106 L23: 0.6883 REMARK 3 S TENSOR REMARK 3 S11: 0.2952 S12: 0.5213 S13: -0.1056 REMARK 3 S21: -0.0981 S22: 0.0465 S23: -0.4031 REMARK 3 S31: 0.4233 S32: 0.7435 S33: -0.2569 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39926 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 38.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIC-HCL PH 8.5, 0.2 M MGCL2, REMARK 280 16% PEG-4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.20633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.41267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.80950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 123.01583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.60317 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.20633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 98.41267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 123.01583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 73.80950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.60317 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 196.82533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 546 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 456 O HOH A 523 1.92 REMARK 500 O HOH A 530 O HOH A 540 1.94 REMARK 500 O HOH A 537 O HOH A 580 2.00 REMARK 500 O HOH A 589 O HOH A 595 2.01 REMARK 500 OD1 ASN A 116 O HOH A 401 2.02 REMARK 500 OG SER A 221 OD1 ASP A 223 2.06 REMARK 500 O GLU A 91 O HOH A 402 2.10 REMARK 500 O HOH A 544 O HOH A 572 2.15 REMARK 500 O HOH A 580 O HOH A 591 2.15 REMARK 500 OE2 GLU A 159 O HOH A 403 2.16 REMARK 500 O ALA A 2 O HOH A 404 2.16 REMARK 500 O HOH A 494 O HOH A 592 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 609 O HOH A 609 12566 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 156.20 70.83 REMARK 500 CYS A 36 75.57 -155.29 REMARK 500 THR A 101 -55.32 -142.67 REMARK 500 VAL A 111 -53.13 -133.11 REMARK 500 HIS A 145 -79.96 -147.69 REMARK 500 ASP A 158 16.42 54.93 REMARK 500 GLU A 159 3.55 -153.41 REMARK 500 ALA A 164 -147.67 51.81 REMARK 500 HIS A 240 -6.87 76.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 HIS A 63 ND1 108.0 REMARK 620 3 HIS A 145 NE2 106.3 100.5 REMARK 620 4 ASP A 165 OD2 83.1 158.8 93.2 REMARK 620 5 HOH A 436 O 129.1 93.6 114.3 65.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD2 REMARK 620 2 HIS A 66 NE2 88.2 REMARK 620 3 ASP A 165 OD2 161.4 92.1 REMARK 620 4 HIS A 219 NE2 97.1 118.8 99.1 REMARK 620 5 HOH A 436 O 92.2 128.3 73.0 112.5 REMARK 620 N 1 2 3 4 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CONFLICT IS DUE TO STRAIN VARIATION. THE CORRECT REMARK 999 SEQUENCE CAN BE FOUND IN GB ENTRY WP_028539944.1. DBREF 7U2R A 2 245 UNP C6J7N0 C6J7N0_9BACL 3 246 SEQADV 7U2R SER A 1 UNP C6J7N0 EXPRESSION TAG SEQADV 7U2R LYS A 218 UNP C6J7N0 MET 219 CONFLICT SEQRES 1 A 245 SER ALA LEU ARG LEU GLN MSE LEU GLY THR GLY GLY ALA SEQRES 2 A 245 PHE ALA LYS LYS TYR PHE ASN ASN ASN ALA LEU LEU TYR SEQRES 3 A 245 ALA GLY ASP PHE THR LEU LEU ILE ASP CYS GLY ILE THR SEQRES 4 A 245 ALA PRO LEU ALA LEU HIS THR ILE GLY LYS SER VAL GLU SEQRES 5 A 245 GLU ILE ASP ALA VAL LEU ILE THR HIS ILE HIS GLY ASP SEQRES 6 A 245 HIS VAL GLY GLY LEU GLU GLU LEU ALA PHE ARG ARG LYS SEQRES 7 A 245 PHE GLY SER GLY ARG LYS PRO ILE LEU TYR ILE ALA GLU SEQRES 8 A 245 ASN LEU VAL GLU PRO LEU TRP GLU ASN THR LEU LYS GLY SEQRES 9 A 245 GLY LEU SER GLN ASP GLY VAL ILE HIS SER LEU ASN ASP SEQRES 10 A 245 VAL PHE ASP VAL ARG LEU LEU LYS GLU SER GLU PRO ALA SEQRES 11 A 245 GLN LEU ALA PRO GLU LEU LYS VAL GLU LEU ILE ARG THR SEQRES 12 A 245 PRO HIS ILE PRO GLY LYS PRO SER TYR SER LEU TYR ILE SEQRES 13 A 245 ASN ASP GLU ILE PHE TYR SER ALA ASP MSE THR PHE GLU SEQRES 14 A 245 PRO GLU LEU LEU MSE ARG LEU VAL ARG GLU ARG GLY CYS SEQRES 15 A 245 ARG ARG ILE PHE HIS GLU VAL GLN LEU THR GLY LYS GLY SEQRES 16 A 245 GLU VAL HIS THR THR LEU GLN GLU LEU LEU SER LEU PRO SEQRES 17 A 245 THR GLU ILE GLN SER GLN ILE LEU LEU LYS HIS TYR SER SEQRES 18 A 245 ASP ASP MSE GLU SER PHE ARG GLY ALA THR GLY ASN MSE SEQRES 19 A 245 ASP PHE LEU ARG GLN HIS GLU VAL TYR THR LEU MODRES 7U2R MSE A 7 MET MODIFIED RESIDUE MODRES 7U2R MSE A 166 MET MODIFIED RESIDUE MODRES 7U2R MSE A 174 MET MODIFIED RESIDUE MODRES 7U2R MSE A 224 MET MODIFIED RESIDUE MODRES 7U2R MSE A 234 MET MODIFIED RESIDUE HET MSE A 7 8 HET MSE A 166 8 HET MSE A 174 8 HET MSE A 224 8 HET MSE A 234 8 HET ZN A 301 1 HET ZN A 302 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *211(H2 O) HELIX 1 AA1 THR A 39 ILE A 47 1 9 HELIX 2 AA2 SER A 50 ILE A 54 5 5 HELIX 3 AA3 HIS A 63 GLY A 68 1 6 HELIX 4 AA4 GLY A 69 GLY A 80 1 12 HELIX 5 AA5 GLU A 91 THR A 101 1 11 HELIX 6 AA6 LEU A 102 SER A 107 1 6 HELIX 7 AA7 SER A 114 VAL A 118 5 5 HELIX 8 AA8 GLU A 169 ARG A 180 1 12 HELIX 9 AA9 THR A 200 SER A 206 1 7 HELIX 10 AB1 PRO A 208 SER A 213 1 6 HELIX 11 AB2 ASP A 223 ARG A 228 5 6 SHEET 1 AA1 7 ASP A 120 LEU A 124 0 SHEET 2 AA1 7 ILE A 86 ALA A 90 1 N LEU A 87 O ARG A 122 SHEET 3 AA1 7 ALA A 56 LEU A 58 1 N VAL A 57 O TYR A 88 SHEET 4 AA1 7 PHE A 30 ILE A 34 1 N LEU A 33 O ALA A 56 SHEET 5 AA1 7 ASN A 22 ALA A 27 -1 N ALA A 23 O ILE A 34 SHEET 6 AA1 7 ARG A 4 GLY A 9 -1 N ARG A 4 O TYR A 26 SHEET 7 AA1 7 VAL A 242 THR A 244 -1 O TYR A 243 N LEU A 5 SHEET 1 AA2 7 ALA A 130 ALA A 133 0 SHEET 2 AA2 7 LEU A 136 ARG A 142 -1 O LEU A 136 N ALA A 133 SHEET 3 AA2 7 TYR A 152 ILE A 156 -1 O SER A 153 N ILE A 141 SHEET 4 AA2 7 ILE A 160 TYR A 162 -1 O ILE A 160 N ILE A 156 SHEET 5 AA2 7 ARG A 184 GLU A 188 1 O PHE A 186 N PHE A 161 SHEET 6 AA2 7 ILE A 215 LYS A 218 1 O LEU A 216 N ILE A 185 SHEET 7 AA2 7 ASP A 235 PHE A 236 1 O ASP A 235 N LEU A 217 LINK C GLN A 6 N MSE A 7 1555 1555 1.34 LINK C MSE A 7 N LEU A 8 1555 1555 1.34 LINK C ASP A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N THR A 167 1555 1555 1.34 LINK C LEU A 173 N MSE A 174 1555 1555 1.32 LINK C MSE A 174 N ARG A 175 1555 1555 1.33 LINK C ASP A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N GLU A 225 1555 1555 1.34 LINK C ASN A 233 N MSE A 234 1555 1555 1.34 LINK C MSE A 234 N ASP A 235 1555 1555 1.34 LINK NE2 HIS A 61 ZN ZN A 302 1555 1555 2.24 LINK ND1 HIS A 63 ZN ZN A 302 1555 1555 2.06 LINK OD2 ASP A 65 ZN ZN A 301 1555 1555 2.29 LINK NE2 HIS A 66 ZN ZN A 301 1555 1555 2.20 LINK NE2 HIS A 145 ZN ZN A 302 1555 1555 2.20 LINK OD2 ASP A 165 ZN ZN A 301 1555 1555 2.27 LINK OD2 ASP A 165 ZN ZN A 302 1555 1555 2.37 LINK NE2 HIS A 219 ZN ZN A 301 1555 1555 2.21 LINK ZN ZN A 301 O HOH A 436 1555 1555 2.20 LINK ZN ZN A 302 O HOH A 436 1555 1555 2.51 CRYST1 102.868 102.868 147.619 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009721 0.005613 0.000000 0.00000 SCALE2 0.000000 0.011225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006774 0.00000