data_7U3P # _entry.id 7U3P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7U3P pdb_00007u3p 10.2210/pdb7u3p/pdb WWPDB D_1000263258 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Unmodified triangle' _pdbx_database_related.db_id 3GBI _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7U3P _pdbx_database_status.recvd_initial_deposition_date 2022-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Woloszyn, K.' 1 0000-0003-1200-583X 'Vecchioni, S.' 2 0000-0001-8243-650X 'Lu, B.' 3 0000-0001-6424-2197 'Ma, Y.' 4 0000-0002-1788-0353 'Seeman, N.C.' 5 0000-0002-9680-4649 'Sha, R.' 6 0000-0002-0807-734X 'Ohayon, Y.P.' 7 0000-0001-7500-4282 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Adv Mater' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1521-4095 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 34 _citation.language ? _citation.page_first e2206876 _citation.page_last e2206876 _citation.title 'Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/adma.202206876 _citation.pdbx_database_id_PubMed 36100349 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Woloszyn, K.' 1 ? primary 'Vecchioni, S.' 2 ? primary 'Ohayon, Y.P.' 3 ? primary 'Lu, B.' 4 ? primary 'Ma, Y.' 5 ? primary 'Huang, Q.' 6 ? primary 'Zhu, E.' 7 ? primary 'Chernovolenko, D.' 8 ? primary 'Markus, T.' 9 ? primary 'Jonoska, N.' 10 ? primary 'Mao, C.' 11 ? primary 'Seeman, N.C.' 12 ? primary 'Sha, R.' 13 0000-0002-0807-734X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7U3P _cell.details ? _cell.formula_units_Z ? _cell.length_a 159.208 _cell.length_a_esd ? _cell.length_b 159.208 _cell.length_b_esd ? _cell.length_c 127.740 _cell.length_c_esd ? _cell.volume 2804060.095 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'H 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*GP*TP*AP*CP*TP*CP*AP*GP*CP*AP*TP*CP*TP*GP*AP*TP*GP*T)-3') ; 5506.578 1 ? ? ? ? 2 polymer syn 'DNA (31-MER)' 9562.160 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3') ; 2082.400 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') ; 1825.216 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DC)(DT)(DC)(DA)(DG)(DC)(DA)(DT)(DC)(DT)(DG)(DA)(DT)(DG)(DT)' GTACTCAGCATCTGATGT C ? 2 polydeoxyribonucleotide no no ;(DA)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DA)(DC)(DA)(DT)(DC) (DA)(DG)(DA)(DT)(DG)(DC)(DT)(DG)(DA)(DG)(DT) ; ACGCAGCCTGTACGGACATCAGATGCTGAGT A ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DT)(DA)(DC)(DA)' CCGTACA B ? 4 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DG)(DC)' GGCTGC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DG n 1 9 DC n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DT n 1 14 DG n 1 15 DA n 1 16 DT n 1 17 DG n 1 18 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DG n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DG n 2 15 DG n 2 16 DA n 2 17 DC n 2 18 DA n 2 19 DT n 2 20 DC n 2 21 DA n 2 22 DG n 2 23 DA n 2 24 DT n 2 25 DG n 2 26 DC n 2 27 DT n 2 28 DG n 2 29 DA n 2 30 DG n 2 31 DT n 3 1 DC n 3 2 DC n 3 3 DG n 3 4 DT n 3 5 DA n 3 6 DC n 3 7 DA n 4 1 DG n 4 2 DG n 4 3 DC n 4 4 DT n 4 5 DG n 4 6 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 18 'synthetic construct' ? 32630 ? 2 1 sample 1 31 'synthetic construct' ? 32630 ? 3 1 sample 1 7 'synthetic construct' ? 32630 ? 4 1 sample 1 6 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7U3P 7U3P ? 1 ? 1 2 PDB 7U3P 7U3P ? 2 ? 1 3 PDB 7U3P 7U3P ? 3 ? 1 4 PDB 7U3P 7U3P ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7U3P C 1 ? 18 ? 7U3P 101 ? 118 ? 101 118 2 2 7U3P A 1 ? 31 ? 7U3P 101 ? 131 ? 101 131 3 3 7U3P B 1 ? 7 ? 7U3P 101 ? 107 ? 101 107 4 4 7U3P D 1 ? 6 ? 7U3P 109 ? 114 ? 109 114 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7U3P _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 16.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 92.51 _exptl_crystal.description Rhombohedral _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details '338K to 293K at 0.4K/hr, 293K to 277K at 0.1K/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MOPS, 125 mM magnesium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-12-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 549.83 _reflns.entry_id 7U3P _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 6.06 _reflns.d_resolution_low 93.705 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2042 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 84.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 6.06 6.814 ? ? ? ? ? ? 212 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 10.9 ? ? ? ? ? 5.568 ? 1 1 ? ? ? ? ? ? ? ? ? ? ? 14.691 93.705 ? ? ? ? ? ? 203 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 10.9 ? ? ? ? ? ? ? 2 1 0.998 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 638.96 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7U3P _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 6.06 _refine.ls_d_res_low 37.55 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1885 _refine.ls_number_reflns_R_free 118 _refine.ls_number_reflns_R_work 1767 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 64.29 _refine.ls_percent_reflns_R_free 6.26 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1303 _refine.ls_R_factor_R_free 0.1740 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1277 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3GBI' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.3644 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 6.06 _refine_hist.d_res_low 37.55 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1268 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1268 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0258 ? 1418 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.3356 ? 2177 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1366 ? 247 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0111 ? 62 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 43.2696 ? 604 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 6.06 _refine_ls_shell.d_res_low 37.55 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 118 _refine_ls_shell.number_reflns_R_work 1767 _refine_ls_shell.percent_reflns_obs 64.29 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1740 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1277 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7U3P _struct.title '[3T7] Self-assembling tensegrity triangle with three turns of DNA per axis with R3 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7U3P _struct_keywords.text 'Tensegrity triangle, self-assembling crystal, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DG 5 O6 ? ? A DG 103 D DG 113 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 6 O2 ? ? A DG 103 D DC 114 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog3 hydrog ? ? B DC 4 N3 ? ? ? 1_555 D DG 5 N1 ? ? A DC 104 D DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 4 N4 ? ? ? 1_555 D DG 5 O6 ? ? A DC 104 D DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 4 O2 ? ? ? 1_555 D DG 5 N2 ? ? A DC 104 D DG 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 5 N1 ? ? ? 1_555 D DT 4 N3 ? ? A DA 105 D DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 5 N6 ? ? ? 1_555 D DT 4 O4 ? ? A DA 105 D DT 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 6 N1 ? ? ? 1_555 D DC 3 N3 ? ? A DG 106 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 6 N2 ? ? ? 1_555 D DC 3 O2 ? ? A DG 106 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 O6 ? ? ? 1_555 D DC 3 N4 ? ? A DG 106 D DC 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 7 N3 ? ? ? 1_555 D DG 2 N1 ? ? A DC 107 D DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 7 N4 ? ? ? 1_555 D DG 2 O6 ? ? A DC 107 D DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 7 O2 ? ? ? 1_555 D DG 2 N2 ? ? A DC 107 D DG 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N3 ? ? ? 1_555 D DG 1 N1 ? ? A DC 108 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N4 ? ? ? 1_555 D DG 1 O6 ? ? A DC 108 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 O2 ? ? ? 1_555 D DG 1 N2 ? ? A DC 108 D DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 7 N1 ? ? A DT 109 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 7 N6 ? ? A DT 109 B DA 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DA 5 N1 ? ? A DG 110 B DA 105 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog20 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DA 5 N6 ? ? A DG 110 B DA 105 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 6 N3 ? ? A DG 110 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 6 O2 ? ? A DG 110 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 6 N4 ? ? A DG 110 B DC 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 5 N1 ? ? A DT 111 B DA 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 5 N6 ? ? A DT 111 B DA 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 4 N3 ? ? A DA 112 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 4 O4 ? ? A DA 112 B DT 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 3 N1 ? ? A DC 113 B DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 3 O6 ? ? A DC 113 B DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 3 N2 ? ? A DC 113 B DG 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 2 N3 ? ? A DG 114 B DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 2 O2 ? ? A DG 114 B DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 2 N4 ? ? A DG 114 B DC 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 1 N3 ? ? A DG 115 B DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 1 O2 ? ? A DG 115 B DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 1 N4 ? ? A DG 115 B DC 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 31 N3 ? ? C DA 103 A DT 131 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog38 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 30 N1 ? ? C DC 104 A DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 30 O6 ? ? C DC 104 A DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 30 N2 ? ? C DC 104 A DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 29 N1 ? ? C DT 105 A DA 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 29 N6 ? ? C DT 105 A DA 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 28 N1 ? ? C DC 106 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 28 O6 ? ? C DC 106 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 28 N2 ? ? C DC 106 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 27 N3 ? ? C DA 107 A DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 27 O4 ? ? C DA 107 A DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 26 N3 ? ? C DG 108 A DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 26 O2 ? ? C DG 108 A DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 26 N4 ? ? C DG 108 A DC 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 25 N1 ? ? C DC 109 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 25 O6 ? ? C DC 109 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 25 N2 ? ? C DC 109 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 24 N3 ? ? C DA 110 A DT 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 24 O4 ? ? C DA 110 A DT 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 23 N1 ? ? C DT 111 A DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 23 N6 ? ? C DT 111 A DA 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 22 N1 ? ? C DC 112 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 22 O6 ? ? C DC 112 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 22 N2 ? ? C DC 112 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 113 A DA 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 113 A DA 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 20 N3 ? ? C DG 114 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 20 O2 ? ? C DG 114 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 20 N4 ? ? C DG 114 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 19 N3 ? ? C DA 115 A DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 19 O4 ? ? C DA 115 A DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 18 N1 ? ? C DT 116 A DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 18 N6 ? ? C DT 116 A DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DA 16 N1 ? ? C DG 117 A DA 116 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog71 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DA 16 N6 ? ? C DG 117 A DA 116 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog72 hydrog ? ? A DG 17 N1 ? ? ? 1_555 B DC 17 N3 ? ? C DG 117 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A DG 17 N2 ? ? ? 1_555 B DC 17 O2 ? ? C DG 117 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A DG 17 O6 ? ? ? 1_555 B DC 17 N4 ? ? C DG 117 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 16 N1 ? ? C DT 118 A DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 16 N6 ? ? C DT 118 A DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7U3P _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006281 _atom_sites.fract_transf_matrix[1][2] 0.003626 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007828 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG DG C . n A 1 2 DT 2 102 102 DT DT C . n A 1 3 DA 3 103 103 DA DA C . n A 1 4 DC 4 104 104 DC DC C . n A 1 5 DT 5 105 105 DT DT C . n A 1 6 DC 6 106 106 DC DC C . n A 1 7 DA 7 107 107 DA DA C . n A 1 8 DG 8 108 108 DG DG C . n A 1 9 DC 9 109 109 DC DC C . n A 1 10 DA 10 110 110 DA DA C . n A 1 11 DT 11 111 111 DT DT C . n A 1 12 DC 12 112 112 DC DC C . n A 1 13 DT 13 113 113 DT DT C . n A 1 14 DG 14 114 114 DG DG C . n A 1 15 DA 15 115 115 DA DA C . n A 1 16 DT 16 116 116 DT DT C . n A 1 17 DG 17 117 117 DG DG C . n A 1 18 DT 18 118 118 DT DT C . n B 2 1 DA 1 101 101 DA DA A . n B 2 2 DC 2 102 102 DC DC A . n B 2 3 DG 3 103 103 DG DG A . n B 2 4 DC 4 104 104 DC DC A . n B 2 5 DA 5 105 105 DA DA A . n B 2 6 DG 6 106 106 DG DG A . n B 2 7 DC 7 107 107 DC DC A . n B 2 8 DC 8 108 108 DC DC A . n B 2 9 DT 9 109 109 DT DT A . n B 2 10 DG 10 110 110 DG DG A . n B 2 11 DT 11 111 111 DT DT A . n B 2 12 DA 12 112 112 DA DA A . n B 2 13 DC 13 113 113 DC DC A . n B 2 14 DG 14 114 114 DG DG A . n B 2 15 DG 15 115 115 DG DG A . n B 2 16 DA 16 116 116 DA DA A . n B 2 17 DC 17 117 117 DC DC A . n B 2 18 DA 18 118 118 DA DA A . n B 2 19 DT 19 119 119 DT DT A . n B 2 20 DC 20 120 120 DC DC A . n B 2 21 DA 21 121 121 DA DA A . n B 2 22 DG 22 122 122 DG DG A . n B 2 23 DA 23 123 123 DA DA A . n B 2 24 DT 24 124 124 DT DT A . n B 2 25 DG 25 125 125 DG DG A . n B 2 26 DC 26 126 126 DC DC A . n B 2 27 DT 27 127 127 DT DT A . n B 2 28 DG 28 128 128 DG DG A . n B 2 29 DA 29 129 129 DA DA A . n B 2 30 DG 30 130 130 DG DG A . n B 2 31 DT 31 131 131 DT DT A . n C 3 1 DC 1 101 101 DC DC B . n C 3 2 DC 2 102 102 DC DC B . n C 3 3 DG 3 103 103 DG DG B . n C 3 4 DT 4 104 104 DT DT B . n C 3 5 DA 5 105 105 DA DA B . n C 3 6 DC 6 106 106 DC DC B . n C 3 7 DA 7 107 107 DA DA B . n D 4 1 DG 1 109 109 DG DG D . n D 4 2 DG 2 110 110 DG DG D . n D 4 3 DC 3 111 111 DC DC D . n D 4 4 DT 4 112 112 DT DT D . n D 4 5 DG 5 113 113 DG DG D . n D 4 6 DC 6 114 114 DC DC D . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email ncs01@nyu.edu _pdbx_contact_author.name_first Nadrian _pdbx_contact_author.name_last Seeman _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9680-4649 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-28 2 'Structure model' 1 1 2022-12-21 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -25.114 -32.563 14.126 8.57752316245 6.74660083924 8.09203344302 1.7063322325 -2.88629669592 3.25808260326 6.33371560244 6.35599704953 4.83606727648 3.18135630866 -1.34363293313 4.03411947865 7.08669656284 -0.177773601509 1.69429629304 2.95975955813 1.71570083394 -0.225847733836 -3.37029261181 -0.254946157065 -2.35692690223 'X-RAY DIFFRACTION' 2 ? refined 8.228 -12.305 33.769 6.44942971304 4.66736144552 4.45129912927 1.10810525963 -1.42296718891 3.21847431209 4.20954730527 8.99275385665 2.28781091549 -1.88558385538 -2.97850937373 2.52087801331 2.27049825438 0.131133838571 1.65684275332 1.42369419209 1.77294259378 -2.66430568972 -2.6308829895 0.41148803266 -0.423080424693 'X-RAY DIFFRACTION' 3 ? refined -29.288 -37.046 12.780 8.40217956 7.31564717947 9.66842289395 0.603468620492 -4.43934776485 0.726279783073 8.73724563861 3.55791144636 7.63020519506 1.79590310553 -7.51280124943 0.242686701928 -1.88690186451 -0.454197875482 1.0347454775 -0.743544311082 -0.759927349455 0.275149610584 1.36245323664 3.2637667984 6.21785894765 'X-RAY DIFFRACTION' 4 ? refined 5.637 -12.999 32.431 7.79195985883 3.10245937673 3.87693358597 0.268563469022 -0.525144893071 0.935387653306 3.82079482039 3.17090535796 8.46796904609 -0.729425326204 -5.52803979939 0.434483108771 4.74827201729 -1.37950341729 -3.21441135378 -0.39538716082 -1.28913096126 3.26361696979 -5.67309628915 2.71575557041 1.38948094275 'X-RAY DIFFRACTION' 5 ? refined 22.700 -5.338 45.359 6.82143834297 5.9610219601 6.30312130973 0.245918663269 -2.28824039441 0.70495060409 4.77215430761 0.410007567179 5.1869715896 -1.40115824473 -4.92363326745 1.47865364175 -0.69217767212 2.33999667221 -1.25970684221 -1.52395685818 -1.1330455694 -3.52402617426 2.42442150796 3.27700185648 1.31718991851 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 C 101 C 118 '( CHAIN C AND RESID 101:118 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 101 A 121 '( CHAIN A AND RESID 101:121 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 122 A 131 '( CHAIN A AND RESID 122:131 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 101 B 107 '( CHAIN B AND RESID 101:107 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 D 109 D 114 '( CHAIN D AND RESID 109:114 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 1.18.2_3874 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O6 _pdbx_validate_symm_contact.auth_asym_id_1 C _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 101 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 N4 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 114 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_444 _pdbx_validate_symm_contact.dist 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" C DG 101 ? ? "C3'" C DG 101 ? ? 1.519 1.435 0.084 0.013 N 2 1 N9 C DG 101 ? ? C4 C DG 101 ? ? 1.308 1.375 -0.067 0.008 N 3 1 "O3'" C DT 102 ? ? "C3'" C DT 102 ? ? 1.513 1.435 0.078 0.013 N 4 1 "C1'" C DT 102 ? ? N1 C DT 102 ? ? 1.607 1.488 0.119 0.013 N 5 1 "O3'" C DA 103 ? ? "C3'" C DA 103 ? ? 1.373 1.419 -0.046 0.006 N 6 1 C5 C DA 103 ? ? C6 C DA 103 ? ? 1.462 1.406 0.056 0.009 N 7 1 "C1'" C DC 104 ? ? N1 C DC 104 ? ? 1.372 1.468 -0.096 0.014 N 8 1 "C5'" C DA 107 ? ? "C4'" C DA 107 ? ? 1.568 1.512 0.056 0.007 N 9 1 "O3'" C DA 107 ? ? "C3'" C DA 107 ? ? 1.514 1.435 0.079 0.013 N 10 1 C2 C DG 108 ? ? N3 C DG 108 ? ? 1.273 1.323 -0.050 0.008 N 11 1 "O3'" C DG 114 ? ? "C3'" C DG 114 ? ? 1.368 1.419 -0.051 0.006 N 12 1 "O3'" C DA 115 ? ? "C3'" C DA 115 ? ? 1.365 1.419 -0.054 0.006 N 13 1 "C1'" C DT 116 ? ? N1 C DT 116 ? ? 1.370 1.468 -0.098 0.014 N 14 1 "C5'" C DG 117 ? ? "C4'" C DG 117 ? ? 1.559 1.512 0.047 0.007 N 15 1 "O3'" C DG 117 ? ? "C3'" C DG 117 ? ? 1.594 1.435 0.159 0.013 N 16 1 P A DG 106 ? ? "O5'" A DG 106 ? ? 1.658 1.593 0.065 0.010 N 17 1 "C5'" A DG 106 ? ? "C4'" A DG 106 ? ? 1.563 1.512 0.051 0.007 N 18 1 "C5'" A DC 107 ? ? "C4'" A DC 107 ? ? 1.555 1.512 0.043 0.007 N 19 1 "O3'" A DT 109 ? ? "C3'" A DT 109 ? ? 1.320 1.419 -0.099 0.006 N 20 1 "C5'" A DA 112 ? ? "C4'" A DA 112 ? ? 1.614 1.512 0.102 0.007 N 21 1 "C3'" A DA 112 ? ? "C2'" A DA 112 ? ? 1.630 1.518 0.112 0.012 N 22 1 "C2'" A DA 112 ? ? "C1'" A DA 112 ? ? 1.592 1.519 0.073 0.010 N 23 1 "O3'" A DA 112 ? ? "C3'" A DA 112 ? ? 1.677 1.435 0.242 0.013 N 24 1 P A DC 113 ? ? "O5'" A DC 113 ? ? 1.708 1.593 0.115 0.010 N 25 1 "O5'" A DC 113 ? ? "C5'" A DC 113 ? ? 1.596 1.440 0.156 0.016 N 26 1 "C5'" A DC 113 ? ? "C4'" A DC 113 ? ? 1.616 1.512 0.104 0.007 N 27 1 N7 A DG 114 ? ? C8 A DG 114 ? ? 1.266 1.305 -0.039 0.006 N 28 1 "C1'" A DC 120 ? ? N1 A DC 120 ? ? 1.586 1.488 0.098 0.013 N 29 1 C2 A DC 120 ? ? N3 A DC 120 ? ? 1.402 1.353 0.049 0.008 N 30 1 "O3'" A DA 123 ? ? "C3'" A DA 123 ? ? 1.526 1.435 0.091 0.013 N 31 1 P A DT 124 ? ? "O5'" A DT 124 ? ? 1.655 1.593 0.062 0.010 N 32 1 "C1'" A DT 124 ? ? N1 A DT 124 ? ? 1.625 1.488 0.137 0.013 N 33 1 "O3'" A DG 128 ? ? "C3'" A DG 128 ? ? 1.376 1.419 -0.043 0.006 N 34 1 "C5'" A DA 129 ? ? "C4'" A DA 129 ? ? 1.563 1.512 0.051 0.007 N 35 1 "O3'" B DC 101 ? ? "C3'" B DC 101 ? ? 1.360 1.419 -0.059 0.006 N 36 1 "C1'" B DC 101 ? ? N1 B DC 101 ? ? 1.578 1.488 0.090 0.013 N 37 1 "C1'" B DC 102 ? ? N1 B DC 102 ? ? 1.336 1.468 -0.132 0.014 N 38 1 C5 B DC 102 ? ? C6 B DC 102 ? ? 1.291 1.339 -0.048 0.008 N 39 1 "O3'" B DA 105 ? ? "C3'" B DA 105 ? ? 1.368 1.419 -0.051 0.006 N 40 1 "C3'" B DA 107 ? ? "C2'" B DA 107 ? ? 1.460 1.516 -0.056 0.008 N 41 1 N9 B DA 107 ? ? C4 B DA 107 ? ? 1.331 1.374 -0.043 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 101 ? ? "C1'" C DG 101 ? ? N9 C DG 101 ? ? 110.12 108.30 1.82 0.30 N 2 1 "O4'" C DT 102 ? ? "C1'" C DT 102 ? ? N1 C DT 102 ? ? 110.20 108.30 1.90 0.30 N 3 1 "O4'" C DA 103 ? ? "C1'" C DA 103 ? ? N9 C DA 103 ? ? 110.40 108.30 2.10 0.30 N 4 1 "O4'" C DC 104 ? ? "C4'" C DC 104 ? ? "C3'" C DC 104 ? ? 101.19 104.50 -3.31 0.40 N 5 1 "C3'" C DC 104 ? ? "C2'" C DC 104 ? ? "C1'" C DC 104 ? ? 95.61 102.40 -6.79 0.80 N 6 1 "O4'" C DG 108 ? ? "C4'" C DG 108 ? ? "C3'" C DG 108 ? ? 99.62 104.50 -4.88 0.40 N 7 1 "C1'" C DG 108 ? ? "O4'" C DG 108 ? ? "C4'" C DG 108 ? ? 103.11 110.10 -6.99 1.00 N 8 1 "C4'" C DG 108 ? ? "C3'" C DG 108 ? ? "C2'" C DG 108 ? ? 96.73 102.20 -5.47 0.70 N 9 1 "O4'" C DG 108 ? ? "C1'" C DG 108 ? ? N9 C DG 108 ? ? 115.22 108.30 6.92 0.30 N 10 1 N9 C DG 108 ? ? C4 C DG 108 ? ? C5 C DG 108 ? ? 107.98 105.40 2.58 0.40 N 11 1 N3 C DG 108 ? ? C4 C DG 108 ? ? N9 C DG 108 ? ? 122.12 126.00 -3.88 0.60 N 12 1 "O4'" C DC 112 ? ? "C1'" C DC 112 ? ? N1 C DC 112 ? ? 112.70 108.30 4.40 0.30 N 13 1 "O5'" C DT 113 ? ? P C DT 113 ? ? OP1 C DT 113 ? ? 99.87 105.70 -5.83 0.90 N 14 1 "O3'" C DG 114 ? ? P C DA 115 ? ? OP1 C DA 115 ? ? 117.18 110.50 6.68 1.10 Y 15 1 "C4'" C DA 115 ? ? "C3'" C DA 115 ? ? "C2'" C DA 115 ? ? 97.61 102.20 -4.59 0.70 N 16 1 "C3'" C DA 115 ? ? "C2'" C DA 115 ? ? "C1'" C DA 115 ? ? 96.55 102.40 -5.85 0.80 N 17 1 "O4'" C DA 115 ? ? "C1'" C DA 115 ? ? N9 C DA 115 ? ? 110.61 108.30 2.31 0.30 N 18 1 N3 C DT 116 ? ? C4 C DT 116 ? ? O4 C DT 116 ? ? 123.72 119.90 3.82 0.60 N 19 1 "O4'" A DC 104 ? ? "C1'" A DC 104 ? ? N1 A DC 104 ? ? 111.97 108.30 3.67 0.30 N 20 1 "O5'" A DG 106 ? ? P A DG 106 ? ? OP2 A DG 106 ? ? 119.39 110.70 8.69 1.20 N 21 1 "O4'" A DG 106 ? ? "C1'" A DG 106 ? ? N9 A DG 106 ? ? 110.49 108.30 2.19 0.30 N 22 1 "O5'" A DC 107 ? ? P A DC 107 ? ? OP1 A DC 107 ? ? 118.37 110.70 7.67 1.20 N 23 1 "C3'" A DC 107 ? ? "C2'" A DC 107 ? ? "C1'" A DC 107 ? ? 97.58 102.40 -4.82 0.80 N 24 1 "O4'" A DT 111 ? ? "C1'" A DT 111 ? ? N1 A DT 111 ? ? 110.73 108.30 2.43 0.30 N 25 1 "O5'" A DA 112 ? ? P A DA 112 ? ? OP1 A DA 112 ? ? 98.58 105.70 -7.12 0.90 N 26 1 "C3'" A DA 112 ? ? "O3'" A DA 112 ? ? P A DC 113 ? ? 130.99 119.70 11.29 1.20 Y 27 1 OP1 A DC 113 ? ? P A DC 113 ? ? OP2 A DC 113 ? ? 103.41 119.60 -16.19 1.50 N 28 1 "O5'" A DC 113 ? ? P A DC 113 ? ? OP2 A DC 113 ? ? 125.99 110.70 15.29 1.20 N 29 1 "C5'" A DC 113 ? ? "C4'" A DC 113 ? ? "O4'" A DC 113 ? ? 116.97 109.80 7.17 1.10 N 30 1 C5 A DG 114 ? ? C6 A DG 114 ? ? O6 A DG 114 ? ? 124.78 128.60 -3.82 0.60 N 31 1 "O4'" A DC 117 ? ? "C1'" A DC 117 ? ? N1 A DC 117 ? ? 112.33 108.30 4.03 0.30 N 32 1 "O4'" A DA 118 ? ? "C1'" A DA 118 ? ? N9 A DA 118 ? ? 111.81 108.30 3.51 0.30 N 33 1 "O3'" A DT 119 ? ? P A DC 120 ? ? OP1 A DC 120 ? ? 120.78 110.50 10.28 1.10 Y 34 1 "C3'" A DA 121 ? ? "C2'" A DA 121 ? ? "C1'" A DA 121 ? ? 97.35 102.40 -5.05 0.80 N 35 1 "O4'" A DA 123 ? ? "C1'" A DA 123 ? ? N9 A DA 123 ? ? 110.38 108.30 2.08 0.30 N 36 1 "O4'" A DT 124 ? ? "C1'" A DT 124 ? ? N1 A DT 124 ? ? 110.74 108.30 2.44 0.30 N 37 1 "O3'" A DT 124 ? ? P A DG 125 ? ? OP1 A DG 125 ? ? 119.09 110.50 8.59 1.10 Y 38 1 "O4'" A DT 131 ? ? "C1'" A DT 131 ? ? N1 A DT 131 ? ? 110.64 108.30 2.34 0.30 N 39 1 "O4'" B DC 101 ? ? "C1'" B DC 101 ? ? N1 B DC 101 ? ? 110.15 108.30 1.85 0.30 N 40 1 N1 B DC 102 ? ? C2 B DC 102 ? ? O2 B DC 102 ? ? 122.54 118.90 3.64 0.60 N 41 1 "O5'" B DG 103 ? ? P B DG 103 ? ? OP1 B DG 103 ? ? 99.87 105.70 -5.83 0.90 N 42 1 "O4'" B DT 104 ? ? "C1'" B DT 104 ? ? N1 B DT 104 ? ? 111.87 108.30 3.57 0.30 N 43 1 "C3'" B DA 105 ? ? "C2'" B DA 105 ? ? "C1'" B DA 105 ? ? 97.47 102.40 -4.93 0.80 N 44 1 "O4'" B DA 105 ? ? "C1'" B DA 105 ? ? N9 B DA 105 ? ? 112.95 108.30 4.65 0.30 N 45 1 "C3'" B DC 106 ? ? "C2'" B DC 106 ? ? "C1'" B DC 106 ? ? 96.04 102.40 -6.36 0.80 N 46 1 "O4'" B DC 106 ? ? "C1'" B DC 106 ? ? N1 B DC 106 ? ? 111.93 108.30 3.63 0.30 N 47 1 "C3'" B DA 107 ? ? "C2'" B DA 107 ? ? "C1'" B DA 107 ? ? 96.96 102.40 -5.44 0.80 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7U3P 'double helix' 7U3P 'a-form double helix' 7U3P 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 3 1_555 B DT 31 1_555 0.378 0.618 0.319 -14.091 -23.838 17.215 1 C_DA103:DT131_A C 103 ? A 131 ? ? 1 1 A DC 4 1_555 B DG 30 1_555 0.388 -0.285 -0.261 -13.154 -12.485 6.066 2 C_DC104:DG130_A C 104 ? A 130 ? 19 1 1 A DT 5 1_555 B DA 29 1_555 0.379 -0.212 0.360 -7.355 -10.767 8.468 3 C_DT105:DA129_A C 105 ? A 129 ? 20 1 1 A DC 6 1_555 B DG 28 1_555 0.435 0.001 -0.706 15.515 -12.774 4.398 4 C_DC106:DG128_A C 106 ? A 128 ? 19 1 1 A DA 7 1_555 B DT 27 1_555 0.239 0.136 1.723 -3.301 -20.268 -11.166 5 C_DA107:DT127_A C 107 ? A 127 ? 20 1 1 A DG 8 1_555 B DC 26 1_555 0.176 -0.083 0.987 1.699 -13.639 10.212 6 C_DG108:DC126_A C 108 ? A 126 ? 19 1 1 A DC 9 1_555 B DG 25 1_555 0.366 -0.033 0.134 6.490 -17.146 0.556 7 C_DC109:DG125_A C 109 ? A 125 ? 19 1 1 A DA 10 1_555 B DT 24 1_555 -0.355 0.323 0.177 -17.236 -19.485 3.194 8 C_DA110:DT124_A C 110 ? A 124 ? 20 1 1 A DT 11 1_555 B DA 23 1_555 -0.095 -0.075 -0.093 -29.391 -28.012 6.366 9 C_DT111:DA123_A C 111 ? A 123 ? 20 1 1 A DC 12 1_555 B DG 22 1_555 0.550 -0.405 -0.351 -8.105 -7.127 4.018 10 C_DC112:DG122_A C 112 ? A 122 ? 19 1 1 A DT 13 1_555 B DA 21 1_555 -0.252 -0.397 -0.617 13.649 10.220 -6.173 11 C_DT113:DA121_A C 113 ? A 121 ? 20 1 1 A DG 14 1_555 B DC 20 1_555 0.053 0.157 0.023 9.322 -11.298 3.030 12 C_DG114:DC120_A C 114 ? A 120 ? 19 1 1 A DA 15 1_555 B DT 19 1_555 0.351 -0.394 -0.239 -3.004 -19.606 -4.898 13 C_DA115:DT119_A C 115 ? A 119 ? 20 1 1 A DT 16 1_555 B DA 18 1_555 -1.349 0.571 -0.030 4.278 -23.349 -3.804 14 C_DT116:DA118_A C 116 ? A 118 ? 20 1 1 A DG 17 1_555 B DC 17 1_555 -0.226 -0.162 0.925 -17.054 -15.993 -3.424 15 C_DG117:DC117_A C 117 ? A 117 ? 19 1 1 A DT 18 1_555 B DA 16 1_555 -0.116 -0.236 0.445 -12.463 -15.975 5.882 16 C_DT118:DA116_A C 118 ? A 116 ? 20 1 1 C DC 1 1_555 B DG 15 1_555 0.110 0.163 0.265 12.015 -23.320 4.568 17 B_DC101:DG115_A B 101 ? A 115 ? 19 1 1 C DC 2 1_555 B DG 14 1_555 0.364 -0.362 -0.550 -9.080 -14.319 -14.901 18 B_DC102:DG114_A B 102 ? A 114 ? 19 1 1 C DG 3 1_555 B DC 13 1_555 0.066 -0.420 -1.069 -1.165 -3.719 1.171 19 B_DG103:DC113_A B 103 ? A 113 ? 19 1 1 C DT 4 1_555 B DA 12 1_555 0.553 0.325 -0.178 11.470 -17.541 -8.616 20 B_DT104:DA112_A B 104 ? A 112 ? 20 1 1 C DA 5 1_555 B DT 11 1_555 0.822 -0.430 1.957 -10.950 -4.450 -3.418 21 B_DA105:DT111_A B 105 ? A 111 ? 20 1 1 C DC 6 1_555 B DG 10 1_555 0.246 -0.512 1.503 -19.653 2.024 -3.333 22 B_DC106:DG110_A B 106 ? A 110 ? 19 1 1 C DA 7 1_555 B DT 9 1_555 -0.563 -1.094 0.674 -32.642 -16.628 -13.247 23 B_DA107:DT109_A B 107 ? A 109 ? 20 1 1 D DG 1 1_555 B DC 8 1_555 -0.204 -0.386 0.436 -7.742 -13.703 -4.330 24 D_DG109:DC108_A D 109 ? A 108 ? 19 1 1 D DG 2 1_555 B DC 7 1_555 -0.379 0.156 0.296 5.340 -19.119 18.519 25 D_DG110:DC107_A D 110 ? A 107 ? 19 1 1 D DC 3 1_555 B DG 6 1_555 -1.682 -0.066 -0.389 -4.185 -14.816 6.001 26 D_DC111:DG106_A D 111 ? A 106 ? 19 1 1 D DT 4 1_555 B DA 5 1_555 0.193 -0.134 0.282 4.594 -11.657 -2.994 27 D_DT112:DA105_A D 112 ? A 105 ? 20 1 1 D DG 5 1_555 B DC 4 1_555 -0.453 -0.163 1.500 -7.215 -5.281 4.184 28 D_DG113:DC104_A D 113 ? A 104 ? 19 1 1 D DC 6 1_555 B DG 3 1_555 -1.090 0.493 1.720 -19.748 -10.358 20.125 29 D_DC114:DG103_A D 114 ? A 103 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 3 1_555 B DT 31 1_555 A DC 4 1_555 B DG 30 1_555 -1.142 0.350 4.036 -7.180 7.797 32.236 -1.012 0.474 4.158 13.592 12.516 33.890 1 CC_DA103DC104:DG130DT131_AA C 103 ? A 131 ? C 104 ? A 130 ? 1 A DC 4 1_555 B DG 30 1_555 A DT 5 1_555 B DA 29 1_555 0.280 0.042 2.968 -5.284 6.031 32.645 -0.819 -1.266 2.852 10.532 9.228 33.590 2 CC_DC104DT105:DA129DG130_AA C 104 ? A 130 ? C 105 ? A 129 ? 1 A DT 5 1_555 B DA 29 1_555 A DC 6 1_555 B DG 28 1_555 -1.074 0.931 2.294 10.611 3.238 32.176 1.248 2.966 1.935 5.636 -18.473 33.987 3 CC_DT105DC106:DG128DA129_AA C 105 ? A 129 ? C 106 ? A 128 ? 1 A DC 6 1_555 B DG 28 1_555 A DA 7 1_555 B DT 27 1_555 -1.048 0.227 4.015 -10.811 1.032 43.227 0.180 0.119 4.153 1.375 14.405 44.507 4 CC_DC106DA107:DT127DG128_AA C 106 ? A 128 ? C 107 ? A 127 ? 1 A DA 7 1_555 B DT 27 1_555 A DG 8 1_555 B DC 26 1_555 2.335 0.348 3.514 2.802 4.370 22.316 -0.873 -4.758 3.773 11.098 -7.116 22.904 5 CC_DA107DG108:DC126DT127_AA C 107 ? A 127 ? C 108 ? A 126 ? 1 A DG 8 1_555 B DC 26 1_555 A DC 9 1_555 B DG 25 1_555 -1.648 -0.489 2.674 2.602 5.973 36.679 -1.392 2.855 2.449 9.400 -4.095 37.233 6 CC_DG108DC109:DG125DC126_AA C 108 ? A 126 ? C 109 ? A 125 ? 1 A DC 9 1_555 B DG 25 1_555 A DA 10 1_555 B DT 24 1_555 0.431 -0.252 3.159 1.701 13.135 34.877 -2.067 -0.458 2.899 21.001 -2.719 37.234 7 CC_DC109DA110:DT124DG125_AA C 109 ? A 125 ? C 110 ? A 124 ? 1 A DA 10 1_555 B DT 24 1_555 A DT 11 1_555 B DA 23 1_555 -0.487 0.120 3.834 -2.787 -2.416 41.294 0.472 0.339 3.845 -3.418 3.942 41.451 8 CC_DA110DT111:DA123DT124_AA C 110 ? A 124 ? C 111 ? A 123 ? 1 A DT 11 1_555 B DA 23 1_555 A DC 12 1_555 B DG 22 1_555 0.129 0.063 2.718 -3.534 0.754 34.494 0.009 -0.666 2.693 1.268 5.939 34.677 9 CC_DT111DC112:DG122DA123_AA C 111 ? A 123 ? C 112 ? A 122 ? 1 A DC 12 1_555 B DG 22 1_555 A DT 13 1_555 B DA 21 1_555 -1.952 -1.203 2.634 4.483 10.673 22.858 -4.755 5.263 1.525 24.979 -10.493 25.588 10 CC_DC112DT113:DA121DG122_AA C 112 ? A 122 ? C 113 ? A 121 ? 1 A DT 13 1_555 B DA 21 1_555 A DG 14 1_555 B DC 20 1_555 0.967 -0.326 3.559 5.268 9.046 28.066 -2.694 -0.671 3.414 17.885 -10.415 29.918 11 CC_DT113DG114:DC120DA121_AA C 113 ? A 121 ? C 114 ? A 120 ? 1 A DG 14 1_555 B DC 20 1_555 A DA 15 1_555 B DT 19 1_555 -0.488 0.746 3.079 0.936 4.698 39.381 0.577 0.823 3.132 6.940 -1.382 39.660 12 CC_DG114DA115:DT119DC120_AA C 114 ? A 120 ? C 115 ? A 119 ? 1 A DA 15 1_555 B DT 19 1_555 A DT 16 1_555 B DA 18 1_555 -0.317 -0.792 2.940 -11.765 0.842 35.503 -1.339 -0.923 2.879 1.336 18.669 37.351 13 CC_DA115DT116:DA118DT119_AA C 115 ? A 119 ? C 116 ? A 118 ? 1 A DT 16 1_555 B DA 18 1_555 A DG 17 1_555 B DC 17 1_555 0.745 0.738 3.700 -5.210 -1.046 45.651 1.046 -1.456 3.582 -1.343 6.688 45.943 14 CC_DT116DG117:DC117DA118_AA C 116 ? A 118 ? C 117 ? A 117 ? 1 A DG 17 1_555 B DC 17 1_555 A DT 18 1_555 B DA 16 1_555 -1.100 -0.909 3.062 -3.181 3.936 29.667 -2.504 1.509 3.017 7.618 6.155 30.086 15 CC_DG117DT118:DA116DC117_AA C 117 ? A 117 ? C 118 ? A 116 ? 1 A DT 18 1_555 B DA 16 1_555 C DC 1 1_555 B DG 15 1_555 1.749 -0.353 2.544 9.169 -0.280 23.299 -0.742 -1.640 3.007 -0.662 -21.657 25.016 16 CB_DT118DC101:DG115DA116_AA C 118 ? A 116 ? B 101 ? A 115 ? 1 C DC 1 1_555 B DG 15 1_555 C DC 2 1_555 B DG 14 1_555 -2.291 0.793 5.050 0.782 -7.575 43.871 2.108 3.135 4.816 -10.048 -1.038 44.495 17 BB_DC101DC102:DG114DG115_AA B 101 ? A 115 ? B 102 ? A 114 ? 1 C DC 2 1_555 B DG 14 1_555 C DG 3 1_555 B DC 13 1_555 1.845 2.865 2.592 8.311 2.276 44.894 3.519 -1.749 3.004 2.948 -10.765 45.672 18 BB_DC102DG103:DC113DG114_AA B 102 ? A 114 ? B 103 ? A 113 ? 1 C DG 3 1_555 B DC 13 1_555 C DT 4 1_555 B DA 12 1_555 -0.347 0.378 2.877 -1.998 -1.518 29.053 1.042 0.306 2.871 -3.019 3.973 29.158 19 BB_DG103DT104:DA112DC113_AA B 103 ? A 113 ? B 104 ? A 112 ? 1 C DT 4 1_555 B DA 12 1_555 C DA 5 1_555 B DT 11 1_555 1.439 -0.261 4.608 -13.733 10.184 40.027 -1.677 -3.733 3.771 14.124 19.047 43.387 20 BB_DT104DA105:DT111DA112_AA B 104 ? A 112 ? B 105 ? A 111 ? 1 C DA 5 1_555 B DT 11 1_555 C DC 6 1_555 B DG 10 1_555 -1.175 -0.456 3.984 -3.844 -3.170 34.892 -0.168 1.231 4.111 -5.253 6.370 35.235 21 BB_DA105DC106:DG110DT111_AA B 105 ? A 111 ? B 106 ? A 110 ? 1 C DC 6 1_555 B DG 10 1_555 C DA 7 1_555 B DT 9 1_555 -0.629 -1.719 3.761 -1.169 19.707 39.960 -4.182 0.719 2.686 26.940 1.598 44.391 22 BB_DC106DA107:DT109DG110_AA B 106 ? A 110 ? B 107 ? A 109 ? 1 C DA 7 1_555 B DT 9 1_555 D DG 1 1_555 B DC 8 1_555 1.281 -0.819 3.082 -1.807 -11.162 6.945 8.898 -7.558 2.130 -57.789 9.356 13.264 23 BD_DA107DG109:DC108DT109_AA B 107 ? A 109 ? D 109 ? A 108 ? 1 D DG 1 1_555 B DC 8 1_555 D DG 2 1_555 B DC 7 1_555 0.611 0.522 2.881 11.141 -6.621 46.537 1.102 0.030 2.853 -8.195 -13.789 48.211 24 DD_DG109DG110:DC107DC108_AA D 109 ? A 108 ? D 110 ? A 107 ? 1 D DG 2 1_555 B DC 7 1_555 D DC 3 1_555 B DG 6 1_555 -1.782 -0.949 2.936 -1.632 2.891 34.273 -2.008 2.782 2.928 4.892 2.761 34.428 25 DD_DG110DC111:DG106DC107_AA D 110 ? A 107 ? D 111 ? A 106 ? 1 D DC 3 1_555 B DG 6 1_555 D DT 4 1_555 B DA 5 1_555 -0.595 -0.196 3.578 -3.124 6.038 26.585 -2.050 0.408 3.494 12.865 6.656 27.425 26 DD_DC111DT112:DA105DG106_AA D 111 ? A 106 ? D 112 ? A 105 ? 1 D DT 4 1_555 B DA 5 1_555 D DG 5 1_555 B DC 4 1_555 1.537 -0.304 3.494 -2.814 9.985 41.363 -1.471 -2.413 3.233 13.874 3.910 42.589 27 DD_DT112DG113:DC104DA105_AA D 112 ? A 105 ? D 113 ? A 104 ? 1 D DG 5 1_555 B DC 4 1_555 D DC 6 1_555 B DG 3 1_555 0.249 -0.464 3.467 0.279 1.171 26.451 -1.341 -0.464 3.446 2.556 -0.610 26.478 28 DD_DG113DC114:DG103DC104_AA D 113 ? A 104 ? D 114 ? A 103 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Office of Naval Research (ONR)' 'United States' N000141912596 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0007991 2 'National Science Foundation (NSF, United States)' 'United States' 2106790 3 'Human Frontier Science Program (HFSP)' France RPG0010/2017 4 'National Science Foundation (NSF, United States)' 'United States' DMR-1420073 5 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GBI _pdbx_initial_refinement_model.details 'PDB entry 3GBI' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'H 3' _space_group.name_Hall 'H 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 #