data_7U3Q # _entry.id 7U3Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7U3Q pdb_00007u3q 10.2210/pdb7u3q/pdb WWPDB D_1000263300 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Unmodified triangle' _pdbx_database_related.db_id 3GBI _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7U3Q _pdbx_database_status.recvd_initial_deposition_date 2022-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Woloszyn, K.' 1 0000-0003-1200-583X 'Vecchioni, S.' 2 0000-0001-8243-650X 'Lu, B.' 3 0000-0001-6424-2197 'Ma, Y.' 4 ? 'Seeman, N.C.' 5 0000-0002-9680-4649 'Sha, R.' 6 0000-0002-0807-734X 'Ohayon, Y.P.' 7 0000-0001-7500-4282 'Huang, Q.' 8 0000-0002-4639-483X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Adv Mater' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1521-4095 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 34 _citation.language ? _citation.page_first e2206876 _citation.page_last e2206876 _citation.title 'Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/adma.202206876 _citation.pdbx_database_id_PubMed 36100349 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Woloszyn, K.' 1 ? primary 'Vecchioni, S.' 2 ? primary 'Ohayon, Y.P.' 3 ? primary 'Lu, B.' 4 ? primary 'Ma, Y.' 5 ? primary 'Huang, Q.' 6 ? primary 'Zhu, E.' 7 ? primary 'Chernovolenko, D.' 8 ? primary 'Markus, T.' 9 ? primary 'Jonoska, N.' 10 ? primary 'Mao, C.' 11 ? primary 'Seeman, N.C.' 12 ? primary 'Sha, R.' 13 0000-0002-0807-734X # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7U3Q _cell.details ? _cell.formula_units_Z ? _cell.length_a 205.696 _cell.length_a_esd ? _cell.length_b 205.696 _cell.length_b_esd ? _cell.length_c 197.198 _cell.length_c_esd ? _cell.volume 7225781.594 _cell.volume_esd ? _cell.Z_PDB 9 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7U3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'H 3' _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*CP*GP*T)-3') ; 1166.805 1 ? ? ? ? 2 polymer syn 'DNA (29-MER)' 8811.669 1 ? ? ? ? 3 polymer syn 'DNA (42-MER)' 13054.390 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3') ; 1825.216 1 ? ? ? ? 5 polymer syn ;DNA (5'-D(P*AP*CP*A)-3') ; 870.638 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DG)(DT)' CCGT B ? 2 polydeoxyribonucleotide no no ;(DT)(DC)(DC)(DT)(DC)(DT)(DG)(DC)(DT)(DA)(DC)(DT)(DA)(DC)(DG)(DT)(DC)(DA)(DG)(DC) (DA)(DT)(DC)(DT)(DG)(DA)(DT)(DG)(DT) ; TCCTCTGCTACTACGTCAGCATCTGATGT C ? 3 polydeoxyribonucleotide no no ;(DG)(DA)(DG)(DC)(DA)(DG)(DC)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DA)(DC)(DA)(DT)(DC) (DA)(DG)(DA)(DT)(DG)(DC)(DT)(DG)(DA)(DC)(DG)(DT)(DA)(DG)(DT)(DA)(DG)(DC)(DA)(DG) (DA)(DG) ; GAGCAGCCTGTACGGACATCAGATGCTGACGTAGTAGCAGAG A ? 4 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DG)(DC)' GGCTGC D ? 5 polydeoxyribonucleotide no no '(DA)(DC)(DA)' ACA E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DT n 2 1 DT n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 DG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DC n 2 12 DT n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DT n 2 17 DC n 2 18 DA n 2 19 DG n 2 20 DC n 2 21 DA n 2 22 DT n 2 23 DC n 2 24 DT n 2 25 DG n 2 26 DA n 2 27 DT n 2 28 DG n 2 29 DT n 3 1 DG n 3 2 DA n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DC n 3 8 DC n 3 9 DT n 3 10 DG n 3 11 DT n 3 12 DA n 3 13 DC n 3 14 DG n 3 15 DG n 3 16 DA n 3 17 DC n 3 18 DA n 3 19 DT n 3 20 DC n 3 21 DA n 3 22 DG n 3 23 DA n 3 24 DT n 3 25 DG n 3 26 DC n 3 27 DT n 3 28 DG n 3 29 DA n 3 30 DC n 3 31 DG n 3 32 DT n 3 33 DA n 3 34 DG n 3 35 DT n 3 36 DA n 3 37 DG n 3 38 DC n 3 39 DA n 3 40 DG n 3 41 DA n 3 42 DG n 4 1 DG n 4 2 DG n 4 3 DC n 4 4 DT n 4 5 DG n 4 6 DC n 5 1 DA n 5 2 DC n 5 3 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 4 'synthetic construct' ? 32630 ? 2 1 sample 1 29 'synthetic construct' ? 32630 ? 3 1 sample 1 42 'synthetic construct' ? 32630 ? 4 1 sample 1 6 'synthetic construct' ? 32630 ? 5 1 sample 1 3 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7U3Q 7U3Q ? 1 ? 1 2 PDB 7U3Q 7U3Q ? 2 ? 1 3 PDB 7U3Q 7U3Q ? 3 ? 1 4 PDB 7U3Q 7U3Q ? 4 ? 1 5 PDB 7U3Q 7U3Q ? 5 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7U3Q B 1 ? 4 ? 7U3Q 108 ? 111 ? 108 111 2 2 7U3Q C 1 ? 29 ? 7U3Q 101 ? 129 ? 101 129 3 3 7U3Q A 1 ? 42 ? 7U3Q 101 ? 142 ? 101 142 4 4 7U3Q D 1 ? 6 ? 7U3Q 130 ? 135 ? 130 135 5 5 7U3Q E 1 ? 3 ? 7U3Q 112 ? 114 ? 112 114 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7U3Q _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 31.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 96.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details '338K to 293K at 0.4K/hr, 293K to 277K at 0.1K/hr' _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM MOPS, 125 mM magnesium sulfate, sodium hydroxide' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-07-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00743 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00743 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 1119.43 _reflns.entry_id 7U3Q _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 9.319 _reflns.d_resolution_low 86.266 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1708 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 86.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 9.319 10.244 ? ? ? ? ? ? 188 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 11.8 ? ? ? ? ? ? ? 1 1 0.124 ? ? ? ? ? ? ? ? ? ? 20.325 86.266 ? ? ? ? ? ? 188 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 10.1 ? ? ? ? ? ? ? 2 1 1.000 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 1190.37 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7U3Q _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 9.32 _refine.ls_d_res_low 44.06 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1642 _refine.ls_number_reflns_R_free 87 _refine.ls_number_reflns_R_work 1555 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 79.44 _refine.ls_percent_reflns_R_free 5.30 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.0950 _refine.ls_R_factor_R_free 0.1002 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.0947 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.96 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 3GBI' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.9701 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 9.32 _refine_hist.d_res_low 44.06 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1722 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1661 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0150 ? 1926 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2718 ? 2958 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0800 ? 336 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0070 ? 84 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 38.3270 ? 822 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 9.32 _refine_ls_shell.d_res_low 44.06 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_R_work 1555 _refine_ls_shell.percent_reflns_obs 79.44 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1002 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.0947 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7U3Q _struct.title '[4T7] Self-assembling tensegrity triangle with four turns of DNA per axis with R3 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7U3Q _struct_keywords.text 'Tensegrity triangle, self-assembling crystal, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 5 N1 ? ? A DC 104 D DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 5 O6 ? ? A DC 104 D DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 5 N2 ? ? A DC 104 D DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 5 N6 ? ? ? 1_555 D DT 4 O4 ? ? A DA 105 D DT 133 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog5 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 3 N3 ? ? A DG 106 D DC 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 3 O2 ? ? A DG 106 D DC 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 3 N4 ? ? A DG 106 D DC 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 2 N1 ? ? A DC 107 D DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 2 O6 ? ? A DC 107 D DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 2 N2 ? ? A DC 107 D DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 1 N1 ? ? A DC 108 D DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 1 O6 ? ? A DC 108 D DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 1 N2 ? ? A DC 108 D DG 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DT 9 N3 ? ? ? 1_555 E DA 3 N1 ? ? A DT 109 E DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DT 9 O4 ? ? ? 1_555 E DA 3 N6 ? ? A DT 109 E DA 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 10 N1 ? ? ? 1_555 E DC 2 N3 ? ? A DG 110 E DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 10 N2 ? ? ? 1_555 E DC 2 O2 ? ? A DG 110 E DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 10 O6 ? ? ? 1_555 E DC 2 N4 ? ? A DG 110 E DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 11 N3 ? ? ? 1_555 E DA 1 N1 ? ? A DT 111 E DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 11 O4 ? ? ? 1_555 E DA 1 N6 ? ? A DT 111 E DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 1 N3 ? ? ? 1_555 C DG 15 N1 ? ? B DC 108 A DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 1 N4 ? ? ? 1_555 C DG 15 O6 ? ? B DC 108 A DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 1 O2 ? ? ? 1_555 C DG 15 N2 ? ? B DC 108 A DG 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 2 N3 ? ? ? 1_555 C DG 14 N1 ? ? B DC 109 A DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 2 N4 ? ? ? 1_555 C DG 14 O6 ? ? B DC 109 A DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 2 O2 ? ? ? 1_555 C DG 14 N2 ? ? B DC 109 A DG 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 110 A DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 110 A DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 110 A DC 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 4 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 111 A DA 112 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog31 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 42 N1 ? ? C DC 103 A DG 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 42 O6 ? ? C DC 103 A DG 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 42 N2 ? ? C DC 103 A DG 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 41 N1 ? ? C DT 104 A DA 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 41 N6 ? ? C DT 104 A DA 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 40 N1 ? ? C DC 105 A DG 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 40 O6 ? ? C DC 105 A DG 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 40 N2 ? ? C DC 105 A DG 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 39 N1 ? ? C DT 106 A DA 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 39 N6 ? ? C DT 106 A DA 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DG 7 N1 ? ? ? 1_555 C DC 38 N3 ? ? C DG 107 A DC 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DG 7 N2 ? ? ? 1_555 C DC 38 O2 ? ? C DG 107 A DC 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 38 N4 ? ? C DG 107 A DC 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 37 N1 ? ? C DC 108 A DG 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 37 O6 ? ? C DC 108 A DG 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 37 N2 ? ? C DC 108 A DG 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DG 34 N1 ? ? C DA 110 A DG 134 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog48 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DG 34 O6 ? ? C DA 110 A DG 134 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog49 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 34 N1 ? ? C DC 111 A DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 34 O6 ? ? C DC 111 A DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 34 N2 ? ? C DC 111 A DG 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 31 N1 ? ? C DC 114 A DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 31 O6 ? ? C DC 114 A DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 31 N2 ? ? C DC 114 A DG 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 30 N3 ? ? C DG 115 A DC 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 30 O2 ? ? C DG 115 A DC 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 30 N4 ? ? C DG 115 A DC 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DC 17 N3 ? ? ? 1_555 C DG 28 N1 ? ? C DC 117 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DG 28 O6 ? ? C DC 117 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 28 N2 ? ? C DC 117 A DG 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DA 18 N1 ? ? ? 1_555 C DT 27 N3 ? ? C DA 118 A DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DA 18 N6 ? ? ? 1_555 C DT 27 O4 ? ? C DA 118 A DT 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DG 19 N2 ? ? ? 1_555 C DT 27 O2 ? ? C DG 119 A DT 127 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog64 hydrog ? ? B DC 20 N3 ? ? ? 1_555 C DG 25 N1 ? ? C DC 120 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B DC 20 N4 ? ? ? 1_555 C DG 25 O6 ? ? C DC 120 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B DC 20 O2 ? ? ? 1_555 C DG 25 N2 ? ? C DC 120 A DG 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B DA 21 N1 ? ? ? 1_555 C DT 24 N3 ? ? C DA 121 A DT 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B DA 21 N6 ? ? ? 1_555 C DT 24 O4 ? ? C DA 121 A DT 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B DC 23 N3 ? ? ? 1_555 C DG 22 N1 ? ? C DC 123 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B DC 23 N4 ? ? ? 1_555 C DG 22 O6 ? ? C DC 123 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B DC 23 O2 ? ? ? 1_555 C DG 22 N2 ? ? C DC 123 A DG 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B DG 25 N1 ? ? ? 1_555 C DC 20 N3 ? ? C DG 125 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B DG 25 N2 ? ? ? 1_555 C DC 20 O2 ? ? C DG 125 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B DG 25 O6 ? ? ? 1_555 C DC 20 N4 ? ? C DG 125 A DC 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B DA 26 N1 ? ? ? 1_555 C DT 19 N3 ? ? C DA 126 A DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B DA 26 N6 ? ? ? 1_555 C DT 19 O4 ? ? C DA 126 A DT 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B DT 27 N3 ? ? ? 1_555 C DA 18 N1 ? ? C DT 127 A DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B DT 27 O4 ? ? ? 1_555 C DA 18 N6 ? ? C DT 127 A DA 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B DG 28 N1 ? ? ? 1_555 C DC 17 N3 ? ? C DG 128 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B DG 28 N2 ? ? ? 1_555 C DC 17 O2 ? ? C DG 128 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B DG 28 O6 ? ? ? 1_555 C DC 17 N4 ? ? C DG 128 A DC 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B DT 29 N3 ? ? ? 1_555 C DA 16 N1 ? ? C DT 129 A DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B DT 29 O4 ? ? ? 1_555 C DA 16 N6 ? ? C DT 129 A DA 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7U3Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.004862 _atom_sites.fract_transf_matrix[1][2] 0.002807 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005614 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005071 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 5.96793 ? ? ? 14.89577 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 14.90797 ? ? ? 11.91318 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 108 108 DC DC B . n A 1 2 DC 2 109 109 DC DC B . n A 1 3 DG 3 110 110 DG DG B . n A 1 4 DT 4 111 111 DT DT B . n B 2 1 DT 1 101 101 DT DT C . n B 2 2 DC 2 102 102 DC DC C . n B 2 3 DC 3 103 103 DC DC C . n B 2 4 DT 4 104 104 DT DT C . n B 2 5 DC 5 105 105 DC DC C . n B 2 6 DT 6 106 106 DT DT C . n B 2 7 DG 7 107 107 DG DG C . n B 2 8 DC 8 108 108 DC DC C . n B 2 9 DT 9 109 109 DT DT C . n B 2 10 DA 10 110 110 DA DA C . n B 2 11 DC 11 111 111 DC DC C . n B 2 12 DT 12 112 112 DT DT C . n B 2 13 DA 13 113 113 DA DA C . n B 2 14 DC 14 114 114 DC DC C . n B 2 15 DG 15 115 115 DG DG C . n B 2 16 DT 16 116 116 DT DT C . n B 2 17 DC 17 117 117 DC DC C . n B 2 18 DA 18 118 118 DA DA C . n B 2 19 DG 19 119 119 DG DG C . n B 2 20 DC 20 120 120 DC DC C . n B 2 21 DA 21 121 121 DA DA C . n B 2 22 DT 22 122 122 DT DT C . n B 2 23 DC 23 123 123 DC DC C . n B 2 24 DT 24 124 124 DT DT C . n B 2 25 DG 25 125 125 DG DG C . n B 2 26 DA 26 126 126 DA DA C . n B 2 27 DT 27 127 127 DT DT C . n B 2 28 DG 28 128 128 DG DG C . n B 2 29 DT 29 129 129 DT DT C . n C 3 1 DG 1 101 101 DG DG A . n C 3 2 DA 2 102 102 DA DA A . n C 3 3 DG 3 103 103 DG DG A . n C 3 4 DC 4 104 104 DC DC A . n C 3 5 DA 5 105 105 DA DA A . n C 3 6 DG 6 106 106 DG DG A . n C 3 7 DC 7 107 107 DC DC A . n C 3 8 DC 8 108 108 DC DC A . n C 3 9 DT 9 109 109 DT DT A . n C 3 10 DG 10 110 110 DG DG A . n C 3 11 DT 11 111 111 DT DT A . n C 3 12 DA 12 112 112 DA DA A . n C 3 13 DC 13 113 113 DC DC A . n C 3 14 DG 14 114 114 DG DG A . n C 3 15 DG 15 115 115 DG DG A . n C 3 16 DA 16 116 116 DA DA A . n C 3 17 DC 17 117 117 DC DC A . n C 3 18 DA 18 118 118 DA DA A . n C 3 19 DT 19 119 119 DT DT A . n C 3 20 DC 20 120 120 DC DC A . n C 3 21 DA 21 121 121 DA DA A . n C 3 22 DG 22 122 122 DG DG A . n C 3 23 DA 23 123 123 DA DA A . n C 3 24 DT 24 124 124 DT DT A . n C 3 25 DG 25 125 125 DG DG A . n C 3 26 DC 26 126 126 DC DC A . n C 3 27 DT 27 127 127 DT DT A . n C 3 28 DG 28 128 128 DG DG A . n C 3 29 DA 29 129 129 DA DA A . n C 3 30 DC 30 130 130 DC DC A . n C 3 31 DG 31 131 131 DG DG A . n C 3 32 DT 32 132 132 DT DT A . n C 3 33 DA 33 133 133 DA DA A . n C 3 34 DG 34 134 134 DG DG A . n C 3 35 DT 35 135 135 DT DT A . n C 3 36 DA 36 136 136 DA DA A . n C 3 37 DG 37 137 137 DG DG A . n C 3 38 DC 38 138 138 DC DC A . n C 3 39 DA 39 139 139 DA DA A . n C 3 40 DG 40 140 140 DG DG A . n C 3 41 DA 41 141 141 DA DA A . n C 3 42 DG 42 142 142 DG DG A . n D 4 1 DG 1 130 130 DG DG D . n D 4 2 DG 2 131 131 DG DG D . n D 4 3 DC 3 132 132 DC DC D . n D 4 4 DT 4 133 133 DT DT D . n D 4 5 DG 5 134 134 DG DG D . n D 4 6 DC 6 135 135 DC DC D . n E 5 1 DA 1 112 112 DA DA E . n E 5 2 DC 2 113 113 DC DC E . n E 5 3 DA 3 114 114 DA DA E . n # _pdbx_contact_author.id 3 _pdbx_contact_author.email ncs01@nyu.edu _pdbx_contact_author.name_first Nadrian _pdbx_contact_author.name_last Seeman _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9680-4649 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 205.6960000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 102.8480000000 -0.8660254038 -0.5000000000 0.0000000000 178.1379614568 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-28 2 'Structure model' 1 1 2022-12-21 3 'Structure model' 1 2 2023-08-16 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' Other 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x+1/3,y+2/3,z+2/3 5 -y+1/3,x-y+2/3,z+2/3 6 -x+y+1/3,-x+2/3,z+2/3 7 x+2/3,y+1/3,z+1/3 8 -y+2/3,x-y+1/3,z+1/3 9 -x+y+2/3,-x+1/3,z+1/3 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 103.283 43.110 55.595 11.0789856397 10.5192826515 9.82544929587 1.03041251504 -1.37375768721 3.14162639999 0.309248374534 0.8328107498 0.836501075914 0.507617748141 0.505122090205 0.829984873718 -0.126598760454 0.236721994742 -0.09139338873 0.211340729122 -0.122501298635 -0.272080641777 -0.262922857248 -0.0495965044449 -0.00280452685056 'X-RAY DIFFRACTION' 2 ? refined 114.173 50.949 54.747 10.0865958701 9.29535144377 11.4706145101 -4.42280324951 2.94550861341 2.10904699149 0.306130739682 0.382836422903 0.15298070177 -0.334932146157 -0.217007390927 0.236259185202 -0.0498660157455 -0.142637736738 -0.226007355311 0.0451895122113 0.123959779653 0.020109015778 -0.158911594463 -0.0245860099471 0.136237483407 'X-RAY DIFFRACTION' 3 ? refined 66.011 18.513 26.227 12.2960573399 10.0714719935 10.3203910106 0.0827828083142 -2.70889021949 -1.36915439961 1.65082269084 0.886593554376 -0.0915990647304 1.13623882436 0.918333751603 0.070327615854 -1.43033476434 -1.61536406086 -3.61729235258 0.0261109060319 -0.336969969788 -1.33811482869 1.61664768843 -0.895336448544 1.21924481725 'X-RAY DIFFRACTION' 4 ? refined 112.180 47.158 57.843 15.4005378575 10.1995705698 11.3544817305 -1.86283222913 1.12908050911 -0.710947425679 0.356147842507 0.152818610176 0.284172579459 -0.217856544489 -0.397201353806 0.272845661756 1.06780589438 1.7708000176 1.3599864012 1.1345642975 -0.44670082437 1.49372607226 -1.16413734933 -0.767283226418 -1.35535262877 'X-RAY DIFFRACTION' 5 ? refined 62.640 15.543 24.064 17.965660423 21.0089381265 16.336099029 4.51360483443 -2.73839453126 0.527124928576 0.45303888246 0.515884597496 0.737130844064 -0.575487405831 -0.396316502224 -0.350429291378 -0.454201965698 -0.230679670432 -1.24922808242 0.0600657871823 -0.745937155046 0.420563343458 0.291771758518 -1.69717608066 -2.22013084599 'X-RAY DIFFRACTION' 6 ? refined 125.009 52.773 68.968 14.5822748628 10.5462979492 11.2080619374 0.597889942223 0.341648039598 -0.793125302361 0.175271606754 0.35470234012 1.78825259339 -0.0910681838776 0.16944525618 -0.742148242868 0.0258134984901 -0.0818526711385 0.261991243645 -0.139206588957 -0.0362797490093 0.748813896942 -0.157290370556 -0.114729519824 0.0347138712389 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 108 B 111 '( CHAIN B AND RESID 108:111 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 E 112 E 114 '( CHAIN E AND RESID 112:114 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 101 C 129 '( CHAIN C AND RESID 101:129 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 101 A 121 '( CHAIN A AND RESID 101:121 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 122 A 142 '( CHAIN A AND RESID 122:142 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 D 130 D 135 '( CHAIN D AND RESID 130:135 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7U3Q _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C1'" B DC 108 ? ? N1 B DC 108 ? ? 1.578 1.488 0.090 0.013 N 2 1 "C1'" C DT 127 ? ? N1 C DT 127 ? ? 1.572 1.488 0.084 0.013 N 3 1 "C5'" A DG 103 ? ? "C4'" A DG 103 ? ? 1.573 1.512 0.061 0.007 N 4 1 "O3'" A DG 103 ? ? "C3'" A DG 103 ? ? 1.518 1.435 0.083 0.013 N 5 1 "C1'" A DC 104 ? ? N1 A DC 104 ? ? 1.575 1.488 0.087 0.013 N 6 1 "C1'" A DC 117 ? ? N1 A DC 117 ? ? 1.573 1.488 0.085 0.013 N 7 1 "C1'" A DT 119 ? ? N1 A DT 119 ? ? 1.583 1.488 0.095 0.013 N 8 1 "C5'" A DG 131 ? ? "C4'" A DG 131 ? ? 1.556 1.512 0.044 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 108 ? ? "C1'" B DC 108 ? ? N1 B DC 108 ? ? 112.57 108.30 4.27 0.30 N 2 1 "O4'" C DT 112 ? ? "C1'" C DT 112 ? ? N1 C DT 112 ? ? 110.46 108.30 2.16 0.30 N 3 1 "O4'" C DG 119 ? ? "C1'" C DG 119 ? ? N9 C DG 119 ? ? 111.32 108.30 3.02 0.30 N 4 1 "O4'" C DC 120 ? ? "C1'" C DC 120 ? ? N1 C DC 120 ? ? 110.47 108.30 2.17 0.30 N 5 1 "O4'" C DT 124 ? ? "C1'" C DT 124 ? ? N1 C DT 124 ? ? 110.48 108.30 2.18 0.30 N 6 1 "O4'" C DG 125 ? ? "C1'" C DG 125 ? ? N9 C DG 125 ? ? 110.81 108.30 2.51 0.30 N 7 1 "C3'" C DA 126 ? ? "O3'" C DA 126 ? ? P C DT 127 ? ? 127.20 119.70 7.50 1.20 Y 8 1 "O4'" C DT 129 ? ? "C1'" C DT 129 ? ? N1 C DT 129 ? ? 111.22 108.30 2.92 0.30 N 9 1 "O4'" A DA 102 ? ? "C1'" A DA 102 ? ? N9 A DA 102 ? ? 112.76 108.30 4.46 0.30 N 10 1 "O4'" A DG 103 ? ? "C1'" A DG 103 ? ? N9 A DG 103 ? ? 112.87 108.30 4.57 0.30 N 11 1 "O4'" A DT 111 ? ? "C1'" A DT 111 ? ? N1 A DT 111 ? ? 111.47 108.30 3.17 0.30 N 12 1 "C3'" A DA 112 ? ? "O3'" A DA 112 ? ? P A DC 113 ? ? 127.42 119.70 7.72 1.20 Y 13 1 "C3'" A DC 113 ? ? "O3'" A DC 113 ? ? P A DG 114 ? ? 111.44 119.70 -8.26 1.20 Y 14 1 "O4'" A DT 119 ? ? "C1'" A DT 119 ? ? N1 A DT 119 ? ? 110.81 108.30 2.51 0.30 N 15 1 "C3'" A DA 121 ? ? "O3'" A DA 121 ? ? P A DG 122 ? ? 142.13 119.70 22.43 1.20 Y 16 1 "O3'" A DA 121 ? ? P A DG 122 ? ? "O5'" A DG 122 ? ? 89.00 104.00 -15.00 1.90 Y 17 1 "O3'" A DA 121 ? ? P A DG 122 ? ? OP2 A DG 122 ? ? 61.50 105.20 -43.70 2.20 Y 18 1 "O3'" A DA 121 ? ? P A DG 122 ? ? OP1 A DG 122 ? ? 158.11 110.50 47.61 1.10 Y 19 1 "O4'" A DG 125 ? ? "C1'" A DG 125 ? ? N9 A DG 125 ? ? 110.75 108.30 2.45 0.30 N 20 1 "O4'" A DT 132 ? ? "C1'" A DT 132 ? ? N1 A DT 132 ? ? 110.28 108.30 1.98 0.30 N 21 1 "O4'" D DT 133 ? ? "C1'" D DT 133 ? ? N1 D DT 133 ? ? 110.53 108.30 2.23 0.30 N 22 1 "O4'" D DC 135 ? ? "C1'" D DC 135 ? ? N1 D DC 135 ? ? 111.96 108.30 3.66 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7U3Q 'double helix' 7U3Q 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 3 1_555 C DG 42 1_555 0.103 -0.116 0.202 1.289 -4.001 -2.332 1 C_DC103:DG142_A C 103 ? A 142 ? 19 1 1 B DT 4 1_555 C DA 41 1_555 -0.031 0.016 0.025 4.494 -5.285 -7.519 2 C_DT104:DA141_A C 104 ? A 141 ? 20 1 1 B DC 5 1_555 C DG 40 1_555 0.129 -0.016 0.324 1.964 -8.278 -5.419 3 C_DC105:DG140_A C 105 ? A 140 ? 19 1 1 B DT 6 1_555 C DA 39 1_555 -0.330 0.153 0.039 -1.376 -9.440 -7.240 4 C_DT106:DA139_A C 106 ? A 139 ? 20 1 1 B DG 7 1_555 C DC 38 1_555 -0.157 -0.126 -0.737 -4.150 -8.641 -4.556 5 C_DG107:DC138_A C 107 ? A 138 ? 19 1 1 B DC 8 1_555 C DG 37 1_555 0.061 -0.167 -0.353 2.578 -13.191 -5.611 6 C_DC108:DG137_A C 108 ? A 137 ? 19 1 1 B DC 11 1_555 C DG 34 1_555 0.219 -0.317 0.554 -3.752 -6.060 2.636 7 C_DC111:DG134_A C 111 ? A 134 ? 19 1 1 B DC 14 1_555 C DG 31 1_555 0.026 0.180 0.143 1.599 -3.160 -10.702 8 C_DC114:DG131_A C 114 ? A 131 ? 19 1 1 B DG 15 1_555 C DC 30 1_555 -0.194 -0.018 -0.223 0.939 -10.481 -2.026 9 C_DG115:DC130_A C 115 ? A 130 ? 19 1 1 B DC 17 1_555 C DG 28 1_555 0.107 -0.082 -0.142 -4.465 -6.021 -1.541 10 C_DC117:DG128_A C 117 ? A 128 ? 19 1 1 B DA 18 1_555 C DT 27 1_555 0.092 0.084 -0.536 -3.488 -2.636 -6.697 11 C_DA118:DT127_A C 118 ? A 127 ? 20 1 1 B DC 20 1_555 C DG 25 1_555 0.007 -0.049 0.334 1.075 -5.705 0.910 12 C_DC120:DG125_A C 120 ? A 125 ? 19 1 1 B DA 21 1_555 C DT 24 1_555 0.113 0.090 -0.100 -4.866 -14.470 -4.226 13 C_DA121:DT124_A C 121 ? A 124 ? 20 1 1 B DC 23 1_555 C DG 22 1_555 0.140 -0.163 0.044 -2.248 -8.535 -2.380 14 C_DC123:DG122_A C 123 ? A 122 ? 19 1 1 B DG 25 1_555 C DC 20 1_555 0.006 -0.255 -0.109 1.511 -9.295 2.051 15 C_DG125:DC120_A C 125 ? A 120 ? 19 1 1 B DA 26 1_555 C DT 19 1_555 0.233 -0.058 -0.208 -4.502 -9.355 3.996 16 C_DA126:DT119_A C 126 ? A 119 ? 20 1 1 B DT 27 1_555 C DA 18 1_555 -0.082 -0.066 0.263 0.758 -12.108 2.914 17 C_DT127:DA118_A C 127 ? A 118 ? 20 1 1 B DG 28 1_555 C DC 17 1_555 -0.068 0.055 0.383 -3.979 -13.530 -4.102 18 C_DG128:DC117_A C 128 ? A 117 ? 19 1 1 B DT 29 1_555 C DA 16 1_555 -0.213 0.091 0.130 -6.139 -11.484 -10.672 19 C_DT129:DA116_A C 129 ? A 116 ? 20 1 1 A DC 1 1_555 C DG 15 1_555 0.200 -0.033 0.124 -0.405 -10.424 0.888 20 B_DC108:DG115_A B 108 ? A 115 ? 19 1 1 A DC 2 1_555 C DG 14 1_555 0.072 -0.020 0.376 -8.006 -15.391 -6.435 21 B_DC109:DG114_A B 109 ? A 114 ? 19 1 1 A DG 3 1_555 C DC 13 1_555 0.274 -0.217 0.013 3.812 -3.300 -0.877 22 B_DG110:DC113_A B 110 ? A 113 ? 19 1 1 A DT 4 1_555 C DA 12 1_555 -2.451 0.496 -0.420 -5.000 -11.691 -21.326 23 B_DT111:DA112_A B 111 ? A 112 ? ? ? 1 E DA 1 1_555 C DT 11 1_555 0.436 0.054 0.332 -1.777 -10.319 0.634 24 E_DA112:DT111_A E 112 ? A 111 ? 20 1 1 E DC 2 1_555 C DG 10 1_555 0.159 -0.217 -0.355 -7.120 -0.099 -5.509 25 E_DC113:DG110_A E 113 ? A 110 ? 19 1 1 E DA 3 1_555 C DT 9 1_555 0.176 -0.102 -0.211 -8.384 -6.766 -15.532 26 E_DA114:DT109_A E 114 ? A 109 ? 20 1 1 D DG 1 1_555 C DC 8 1_555 0.052 0.009 0.217 6.973 -7.707 -3.692 27 D_DG130:DC108_A D 130 ? A 108 ? 19 1 1 D DG 2 1_555 C DC 7 1_555 -0.179 -0.047 0.035 5.301 -11.387 -0.688 28 D_DG131:DC107_A D 131 ? A 107 ? 19 1 1 D DC 3 1_555 C DG 6 1_555 0.165 -0.033 0.234 -3.359 -13.128 0.505 29 D_DC132:DG106_A D 132 ? A 106 ? 19 1 1 D DT 4 1_555 C DA 5 1_555 0.161 0.801 -0.115 -3.483 -10.222 -27.082 30 D_DT133:DA105_A D 133 ? A 105 ? ? ? 1 D DG 5 1_555 C DC 4 1_555 -0.019 -0.103 0.020 1.304 -4.941 -1.378 31 D_DG134:DC104_A D 134 ? A 104 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 3 1_555 C DG 42 1_555 B DT 4 1_555 C DA 41 1_555 -0.646 -0.702 3.082 2.066 1.898 28.000 -1.858 1.778 2.974 3.910 -4.256 28.137 1 CC_DC103DT104:DA141DG142_AA C 103 ? A 142 ? C 104 ? A 141 ? 1 B DT 4 1_555 C DA 41 1_555 B DC 5 1_555 C DG 40 1_555 -0.155 -0.208 3.412 2.032 -0.416 40.785 -0.250 0.455 3.402 -0.597 -2.914 40.835 2 CC_DT104DC105:DG140DA141_AA C 104 ? A 141 ? C 105 ? A 140 ? 1 B DC 5 1_555 C DG 40 1_555 B DT 6 1_555 C DA 39 1_555 0.262 -0.094 3.626 1.076 -4.670 33.163 0.692 -0.258 3.612 -8.129 -1.873 33.498 3 CC_DC105DT106:DA139DG140_AA C 105 ? A 140 ? C 106 ? A 139 ? 1 B DT 6 1_555 C DA 39 1_555 B DG 7 1_555 C DC 38 1_555 -0.381 -0.166 3.666 -7.045 -0.959 36.298 -0.115 -0.475 3.677 -1.522 11.177 36.965 4 CC_DT106DG107:DC138DA139_AA C 106 ? A 139 ? C 107 ? A 138 ? 1 B DG 7 1_555 C DC 38 1_555 B DC 8 1_555 C DG 37 1_555 0.500 -1.442 3.023 -0.474 -6.046 37.501 -1.478 -0.826 3.202 -9.330 0.731 37.971 5 CC_DG107DC108:DG137DC138_AA C 107 ? A 138 ? C 108 ? A 137 ? 1 B DC 14 1_555 C DG 31 1_555 B DG 15 1_555 C DC 30 1_555 -0.355 -1.277 3.459 -1.952 -6.010 29.963 -1.112 0.249 3.655 -11.464 3.724 30.608 6 CC_DC114DG115:DC130DG131_AA C 114 ? A 131 ? C 115 ? A 130 ? 1 B DG 15 1_555 C DC 30 1_555 B DC 17 1_555 C DG 28 1_555 -0.541 0.402 6.623 -1.142 -10.549 87.522 0.743 0.340 6.560 -7.602 0.823 88.033 7 CC_DG115DC117:DG128DC130_AA C 115 ? A 130 ? C 117 ? A 128 ? 1 B DC 17 1_555 C DG 28 1_555 B DA 18 1_555 C DT 27 1_555 -0.314 0.495 3.565 -1.655 -2.074 33.341 1.233 0.249 3.540 -3.608 2.879 33.443 8 CC_DC117DA118:DT127DG128_AA C 117 ? A 128 ? C 118 ? A 127 ? 1 B DA 18 1_555 C DT 27 1_555 B DC 20 1_555 C DG 25 1_555 1.252 -1.630 6.331 -9.418 0.221 62.931 -1.566 -1.977 6.104 0.211 8.968 63.560 9 CC_DA118DC120:DG125DT127_AA C 118 ? A 127 ? C 120 ? A 125 ? 1 B DC 20 1_555 C DG 25 1_555 B DA 21 1_555 C DT 24 1_555 -1.601 -0.488 3.413 -4.180 -1.606 31.226 -0.575 2.106 3.611 -2.965 7.715 31.538 10 CC_DC120DA121:DT124DG125_AA C 120 ? A 125 ? C 121 ? A 124 ? 1 B DA 21 1_555 C DT 24 1_555 B DC 23 1_555 C DG 22 1_555 -0.915 -0.168 6.270 -1.190 -13.431 79.405 0.550 0.649 6.243 -10.444 0.925 80.354 11 CC_DA121DC123:DG122DT124_AA C 121 ? A 124 ? C 123 ? A 122 ? 1 B DC 23 1_555 C DG 22 1_555 B DG 25 1_555 C DC 20 1_555 -0.384 -0.438 6.260 -5.093 -0.156 56.328 -0.446 -0.142 6.272 -0.165 5.383 56.540 12 CC_DC123DG125:DC120DG122_AA C 123 ? A 122 ? C 125 ? A 120 ? 1 B DG 25 1_555 C DC 20 1_555 B DA 26 1_555 C DT 19 1_555 -0.106 -0.285 3.090 -0.178 1.199 39.384 -0.557 0.138 3.080 1.779 0.265 39.401 13 CC_DG125DA126:DT119DC120_AA C 125 ? A 120 ? C 126 ? A 119 ? 1 B DA 26 1_555 C DT 19 1_555 B DT 27 1_555 C DA 18 1_555 -0.243 -0.128 3.100 0.029 0.207 32.433 -0.264 0.439 3.099 0.370 -0.051 32.434 14 CC_DA126DT127:DA118DT119_AA C 126 ? A 119 ? C 127 ? A 118 ? 1 B DT 27 1_555 C DA 18 1_555 B DG 28 1_555 C DC 17 1_555 -0.985 0.142 2.976 -5.324 -0.182 36.331 0.249 0.886 3.084 -0.289 8.483 36.706 15 CC_DT127DG128:DC117DA118_AA C 127 ? A 118 ? C 128 ? A 117 ? 1 B DG 28 1_555 C DC 17 1_555 B DT 29 1_555 C DA 16 1_555 -0.876 -0.651 2.951 -0.555 -0.392 29.210 -1.213 1.628 2.975 -0.777 1.100 29.218 16 CC_DG128DT129:DA116DC117_AA C 128 ? A 117 ? C 129 ? A 116 ? 1 B DT 29 1_555 C DA 16 1_555 A DC 1 1_555 C DG 15 1_555 1.555 0.281 2.902 1.199 2.062 15.834 -0.358 -4.786 3.021 7.429 -4.321 16.012 17 CB_DT129DC108:DG115DA116_AA C 129 ? A 116 ? B 108 ? A 115 ? 1 A DC 1 1_555 C DG 15 1_555 A DC 2 1_555 C DG 14 1_555 -0.764 1.501 3.410 -3.402 -9.448 50.645 2.375 0.644 3.144 -10.921 3.933 51.566 18 BB_DC108DC109:DG114DG115_AA B 108 ? A 115 ? B 109 ? A 114 ? 1 A DC 2 1_555 C DG 14 1_555 A DG 3 1_555 C DC 13 1_555 -0.048 2.805 3.165 3.960 -6.390 44.526 4.176 0.385 2.744 -8.363 -5.182 45.125 19 BB_DC109DG110:DC113DG114_AA B 109 ? A 114 ? B 110 ? A 113 ? 1 A DG 3 1_555 C DC 13 1_555 A DT 4 1_555 C DA 12 1_555 -0.613 -1.345 3.243 1.220 -2.558 24.067 -2.386 1.850 3.331 -6.107 -2.912 24.230 20 BB_DG110DT111:DA112DC113_AA B 110 ? A 113 ? B 111 ? A 112 ? 1 A DT 4 1_555 C DA 12 1_555 E DA 1 1_555 C DT 11 1_555 2.607 -0.024 3.520 -9.712 7.029 41.365 -0.722 -4.510 2.826 9.707 13.414 42.994 21 BE_DT111DA112:DT111DA112_AA B 111 ? A 112 ? E 112 ? A 111 ? 1 E DA 1 1_555 C DT 11 1_555 E DC 2 1_555 C DG 10 1_555 -1.332 -0.461 4.584 -6.655 -4.889 40.704 0.100 0.859 4.756 -6.942 9.450 41.499 22 EE_DA112DC113:DG110DT111_AA E 112 ? A 111 ? E 113 ? A 110 ? 1 E DC 2 1_555 C DG 10 1_555 E DA 3 1_555 C DT 9 1_555 -0.556 -1.349 3.054 -0.973 15.482 28.896 -4.639 0.846 2.097 28.575 1.796 32.718 23 EE_DC113DA114:DT109DG110_AA E 113 ? A 110 ? E 114 ? A 109 ? 1 E DA 3 1_555 C DT 9 1_555 D DG 1 1_555 C DC 8 1_555 2.575 -0.591 3.276 4.490 -14.839 19.024 3.895 -4.469 3.375 -37.788 -11.434 24.496 24 ED_DA114DG130:DC108DT109_AA E 114 ? A 109 ? D 130 ? A 108 ? 1 D DG 1 1_555 C DC 8 1_555 D DG 2 1_555 C DC 7 1_555 -1.134 -0.642 3.415 1.252 -3.334 35.134 -0.542 2.064 3.419 -5.505 -2.068 35.309 25 DD_DG130DG131:DC107DC108_AA D 130 ? A 108 ? D 131 ? A 107 ? 1 D DG 2 1_555 C DC 7 1_555 D DC 3 1_555 C DG 6 1_555 -0.152 -1.097 3.289 -0.756 -4.719 36.470 -1.078 0.135 3.402 -7.501 1.201 36.771 26 DD_DG131DC132:DG106DC107_AA D 131 ? A 107 ? D 132 ? A 106 ? 1 D DC 3 1_555 C DG 6 1_555 D DT 4 1_555 C DA 5 1_555 -1.432 -0.602 3.001 2.600 3.456 35.019 -1.450 2.708 2.820 5.716 -4.301 35.277 27 DD_DC132DT133:DA105DG106_AA D 132 ? A 106 ? D 133 ? A 105 ? 1 D DT 4 1_555 C DA 5 1_555 D DG 5 1_555 C DC 4 1_555 1.811 -0.171 3.002 -0.936 5.128 33.350 -1.049 -3.258 2.894 8.869 1.618 33.744 28 DD_DT133DG134:DC104DA105_AA D 133 ? A 105 ? D 134 ? A 104 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Office of Naval Research (ONR)' 'United States' N000141912596 1 'Department of Energy (DOE, United States)' 'United States' DE-SC0007991 2 'National Science Foundation (NSF, United States)' 'United States' 2106790 3 'Human Frontier Science Program (HFSP)' France RPG0010/2017 4 'National Science Foundation (NSF, United States)' 'United States' DMR-1420073 5 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GBI _pdbx_initial_refinement_model.details 'PDB entry 3GBI' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'H 3' _space_group.name_Hall 'H 3' _space_group.IT_number 146 _space_group.crystal_system trigonal _space_group.id 1 #