HEADER DNA 28-FEB-22 7U3S TITLE [2T7+21] SELF-ASSEMBLING TENSEGRITY TRIANGLE WITH TWO TURNS OF DNA AND TITLE 2 THE STICKY END ADDITION OF A TWO-TURN LINKER PER AXIS WITH R3 TITLE 3 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*CP*TP*GP*AP*TP*GP*T)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(P*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)- COMPND 12 3'); COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (5'- COMPND 21 D(P*GP*AP*TP*GP*CP*TP*GP*AP*CP*GP*TP*AP*GP*TP*AP*GP*CP*AP*GP*AP*G)- COMPND 22 3'); COMPND 23 CHAIN: X; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 6; COMPND 26 MOLECULE: DNA (5'- COMPND 27 D(P*TP*CP*CP*TP*CP*TP*GP*CP*TP*AP*CP*TP*AP*CP*GP*TP*CP*AP*GP*CP*A)- COMPND 28 3'); COMPND 29 CHAIN: Y; COMPND 30 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 5; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 MOL_ID: 6; SOURCE 22 SYNTHETIC: YES; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, SELF-ASSEMBLING CRYSTAL, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.WOLOSZYN,S.VECCHIONI,N.C.SEEMAN,R.SHA,Y.P.OHAYON REVDAT 3 25-OCT-23 7U3S 1 REMARK REVDAT 2 21-DEC-22 7U3S 1 JRNL REVDAT 1 28-SEP-22 7U3S 0 JRNL AUTH K.WOLOSZYN,S.VECCHIONI,Y.P.OHAYON,B.LU,Y.MA,Q.HUANG,E.ZHU, JRNL AUTH 2 D.CHERNOVOLENKO,T.MARKUS,N.JONOSKA,C.MAO,N.C.SEEMAN,R.SHA JRNL TITL AUGMENTED DNA NANOARCHITECTURES: A STRUCTURAL LIBRARY OF 3D JRNL TITL 2 SELF-ASSEMBLING TENSEGRITY TRIANGLE VARIANTS. JRNL REF ADV MATER V. 34 06876 2022 JRNL REFN ISSN 1521-4095 JRNL PMID 36100349 JRNL DOI 10.1002/ADMA.202206876 REMARK 2 REMARK 2 RESOLUTION. 9.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 9.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.3 REMARK 3 NUMBER OF REFLECTIONS : 1344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.940 REMARK 3 FREE R VALUE TEST SET COUNT : 53 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0100 - 9.5000 0.73 1291 53 0.1860 0.1895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.315 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 878.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 798.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1926 REMARK 3 ANGLE : 1.153 2958 REMARK 3 CHIRALITY : 0.060 336 REMARK 3 PLANARITY : 0.007 84 REMARK 3 DIHEDRAL : 38.905 822 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 130 THROUGH 136) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7550 13.3077 -47.0526 REMARK 3 T TENSOR REMARK 3 T11: 10.3876 T22: 13.2310 REMARK 3 T33: 7.7328 T12: -3.3785 REMARK 3 T13: -0.2115 T23: 1.5645 REMARK 3 L TENSOR REMARK 3 L11: 2.4517 L22: 1.7654 REMARK 3 L33: 4.9045 L12: -1.8185 REMARK 3 L13: 1.6216 L23: -2.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.2496 S12: 0.2998 S13: -0.0614 REMARK 3 S21: 3.8419 S22: 1.3130 S23: 2.3011 REMARK 3 S31: 4.8417 S32: 2.0596 S33: -1.3464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 122 THROUGH 129) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9789 22.0279 -33.1043 REMARK 3 T TENSOR REMARK 3 T11: 12.4175 T22: 10.8602 REMARK 3 T33: 7.1299 T12: -0.5062 REMARK 3 T13: 4.9659 T23: -1.7463 REMARK 3 L TENSOR REMARK 3 L11: 5.2162 L22: 0.0942 REMARK 3 L33: 1.6324 L12: 0.5500 REMARK 3 L13: 2.8659 L23: 0.2367 REMARK 3 S TENSOR REMARK 3 S11: -2.5507 S12: 1.2595 S13: 1.9557 REMARK 3 S21: -1.1537 S22: -1.5300 S23: 0.8317 REMARK 3 S31: -1.4715 S32: 3.0641 S33: -13.4799 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 101 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7404 12.8566 -49.1266 REMARK 3 T TENSOR REMARK 3 T11: 9.5647 T22: 11.7200 REMARK 3 T33: 8.5121 T12: 0.2911 REMARK 3 T13: 3.2437 T23: -0.5394 REMARK 3 L TENSOR REMARK 3 L11: 0.7106 L22: 0.5028 REMARK 3 L33: 0.1442 L12: -0.2931 REMARK 3 L13: -0.4805 L23: 0.3497 REMARK 3 S TENSOR REMARK 3 S11: 3.7347 S12: -1.0284 S13: -2.6337 REMARK 3 S21: -1.5167 S22: 2.0476 S23: 4.4764 REMARK 3 S31: 1.6253 S32: -2.1869 S33: 11.1247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 137 THROUGH 142) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7761 6.0673 -59.3043 REMARK 3 T TENSOR REMARK 3 T11: 14.2349 T22: 14.0390 REMARK 3 T33: 5.3913 T12: -2.9251 REMARK 3 T13: 2.0477 T23: -2.9086 REMARK 3 L TENSOR REMARK 3 L11: 0.0462 L22: 1.0420 REMARK 3 L33: 1.0634 L12: 0.2053 REMARK 3 L13: -0.1644 L23: -1.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.6357 S12: -1.3749 S13: -2.6801 REMARK 3 S21: 1.5748 S22: -0.0030 S23: -3.0576 REMARK 3 S31: 0.9471 S32: 0.3459 S33: -2.4925 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'X' AND RESID 122 THROUGH 142) REMARK 3 ORIGIN FOR THE GROUP (A): -41.8707 45.1681 -17.9365 REMARK 3 T TENSOR REMARK 3 T11: 13.0896 T22: 12.1189 REMARK 3 T33: 13.0747 T12: -1.6925 REMARK 3 T13: 2.0293 T23: -2.1739 REMARK 3 L TENSOR REMARK 3 L11: 0.0399 L22: 0.0539 REMARK 3 L33: 0.0132 L12: 0.1889 REMARK 3 L13: -0.1416 L23: 0.0937 REMARK 3 S TENSOR REMARK 3 S11: -1.0736 S12: -2.7041 S13: -0.8041 REMARK 3 S21: -2.8379 S22: -0.8756 S23: 1.8020 REMARK 3 S31: 0.6812 S32: -1.5709 S33: -9.5212 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'Y' AND RESID 101 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): -48.3765 49.7874 -14.8060 REMARK 3 T TENSOR REMARK 3 T11: 12.0672 T22: 15.4623 REMARK 3 T33: 8.6079 T12: 0.6625 REMARK 3 T13: 3.2613 T23: -2.7812 REMARK 3 L TENSOR REMARK 3 L11: 0.3363 L22: 0.2953 REMARK 3 L33: 0.2875 L12: 0.1151 REMARK 3 L13: 0.1886 L23: -0.2815 REMARK 3 S TENSOR REMARK 3 S11: -0.9507 S12: 1.0845 S13: -0.0581 REMARK 3 S21: -0.6222 S22: -0.1384 S23: -3.2296 REMARK 3 S31: 0.1072 S32: 0.0952 S33: -4.6681 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1000263280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1413 REMARK 200 RESOLUTION RANGE HIGH (A) : 9.110 REMARK 200 RESOLUTION RANGE LOW (A) : 81.491 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 10.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 95.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 29.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPS, 125 MM MAGNESIUM SULFATE, REMARK 280 SODIUM HYDROXIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 106.36400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 61.40928 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.26633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 106.36400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 61.40928 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.26633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 106.36400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 61.40928 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.26633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 122.81857 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 116.53267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 122.81857 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 116.53267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 122.81857 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 116.53267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D, X, Y REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A, D, X, Y REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DT X 127 N2 DG Y 119 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 138 O3' DG D 138 C3' -0.040 REMARK 500 DA Y 121 O3' DA Y 121 C3' -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 130 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC B 131 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG B 132 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DT B 133 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA B 134 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA A 102 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT A 111 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA A 118 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC Y 102 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT Y 104 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC Y 120 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBI RELATED DB: PDB REMARK 900 UNMODIFIED TRIANGLE DBREF 7U3S B 130 136 PDB 7U3S 7U3S 130 136 DBREF 7U3S C 122 129 PDB 7U3S 7U3S 122 129 DBREF 7U3S A 101 121 PDB 7U3S 7U3S 101 121 DBREF 7U3S D 137 142 PDB 7U3S 7U3S 137 142 DBREF 7U3S X 122 142 PDB 7U3S 7U3S 122 142 DBREF 7U3S Y 101 121 PDB 7U3S 7U3S 101 121 SEQRES 1 B 7 DC DC DG DT DA DC DA SEQRES 1 C 8 DT DC DT DG DA DT DG DT SEQRES 1 A 21 DG DA DG DC DA DG DC DC DT DG DT DA DC SEQRES 2 A 21 DG DG DA DC DA DT DC DA SEQRES 1 D 6 DG DG DC DT DG DC SEQRES 1 X 21 DG DA DT DG DC DT DG DA DC DG DT DA DG SEQRES 2 X 21 DT DA DG DC DA DG DA DG SEQRES 1 Y 21 DT DC DC DT DC DT DG DC DT DA DC DT DA SEQRES 2 Y 21 DC DG DT DC DA DG DC DA CRYST1 212.728 212.728 174.799 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004701 0.002714 0.000000 0.00000 SCALE2 0.000000 0.005428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005721 0.00000