HEADER STRUCTURAL PROTEIN 28-FEB-22 7U48 TITLE CLAVULANIC ACID-CTX-M-15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLA, BLACTX-M-15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, BACTERIAL RESISTANCE, B-LACTAMASE, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.AHMADVAND,C.H.KANG REVDAT 2 18-OCT-23 7U48 1 REMARK REVDAT 1 25-MAY-22 7U48 0 JRNL AUTH P.AHMADVAND,J.J.AVILLAN,J.A.LEWIS,D.R.CALL,C.KANG JRNL TITL CHARACTERIZATION OF INTERACTIONS BETWEEN CTX-M-15 AND JRNL TITL 2 CLAVULANIC ACID, DESFUROYLCEFTIOFUR, CEFTIOFUR, AMPICILLIN, JRNL TITL 3 AND NITROCEFIN. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 35563620 JRNL DOI 10.3390/IJMS23095229 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 3 NUMBER OF REFLECTIONS : 81404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0200 - 4.0200 1.00 7112 173 0.1832 0.2028 REMARK 3 2 4.0200 - 3.1900 1.00 6903 169 0.2211 0.2766 REMARK 3 3 3.1900 - 2.7900 1.00 6909 169 0.2641 0.3136 REMARK 3 4 2.7900 - 2.5300 0.99 6874 169 0.2855 0.3001 REMARK 3 5 2.5300 - 2.3500 0.99 6829 167 0.2790 0.3344 REMARK 3 6 2.3500 - 2.2100 1.00 6834 167 0.2914 0.3283 REMARK 3 7 2.2100 - 2.1000 0.99 6839 168 0.2940 0.3398 REMARK 3 8 2.1000 - 2.0100 0.99 6775 165 0.3164 0.3431 REMARK 3 9 2.0100 - 1.9300 0.99 6722 166 0.3427 0.3532 REMARK 3 10 1.9300 - 1.8700 0.94 6485 159 0.3639 0.3800 REMARK 3 11 1.8700 - 1.8100 0.76 5164 125 0.3837 0.3938 REMARK 3 12 1.8100 - 1.7600 0.49 3367 79 0.3942 0.4082 REMARK 3 13 1.7600 - 1.7100 0.25 1708 43 0.4131 0.4235 REMARK 3 14 1.7100 - 1.6700 0.14 937 27 0.4450 0.4555 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000260949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 1.22400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4HBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM AMMONIUM SULFATE, 30% PEG 4000, REMARK 280 PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.34600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.48800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.34600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.48800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 522 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 VAL A -1 REMARK 465 LYS A 0 REMARK 465 LYS A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 GLN A 5 REMARK 465 PHE A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 MET A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 VAL A 14 REMARK 465 THR A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 LEU A 23 REMARK 465 TYR A 24 REMARK 465 MET B -2 REMARK 465 VAL B -1 REMARK 465 LYS B 0 REMARK 465 LYS B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 GLN B 5 REMARK 465 PHE B 6 REMARK 465 THR B 7 REMARK 465 LEU B 8 REMARK 465 MET B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 THR B 13 REMARK 465 VAL B 14 REMARK 465 THR B 15 REMARK 465 LEU B 16 REMARK 465 LEU B 17 REMARK 465 LEU B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 VAL B 21 REMARK 465 PRO B 22 REMARK 465 LEU B 23 REMARK 465 TYR B 24 REMARK 465 MET C -2 REMARK 465 VAL C -1 REMARK 465 LYS C 0 REMARK 465 LYS C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 ARG C 4 REMARK 465 GLN C 5 REMARK 465 PHE C 6 REMARK 465 THR C 7 REMARK 465 LEU C 8 REMARK 465 MET C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 ALA C 12 REMARK 465 THR C 13 REMARK 465 VAL C 14 REMARK 465 THR C 15 REMARK 465 LEU C 16 REMARK 465 LEU C 17 REMARK 465 LEU C 18 REMARK 465 GLY C 19 REMARK 465 SER C 20 REMARK 465 VAL C 21 REMARK 465 PRO C 22 REMARK 465 LEU C 23 REMARK 465 TYR C 24 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER C 147 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 52 NH2 ARG B 191 1.75 REMARK 500 O HOH A 623 O HOH A 637 1.81 REMARK 500 O HOH B 475 O HOH B 508 1.91 REMARK 500 OG SER C 70 C03 LBX C 301 1.92 REMARK 500 O HOH A 625 O HOH A 637 1.94 REMARK 500 O HOH C 456 O HOH C 498 1.94 REMARK 500 O HOH A 615 O HOH A 624 1.95 REMARK 500 OG SER B 70 O01 LBX B 301 1.95 REMARK 500 O HOH A 623 O HOH A 625 1.95 REMARK 500 O HOH A 517 O HOH A 632 1.96 REMARK 500 O HOH B 505 O HOH B 519 1.99 REMARK 500 O SER C 130 O HOH C 401 2.01 REMARK 500 NH2 ARG C 254 O LEU C 288 2.04 REMARK 500 O HOH B 427 O HOH B 515 2.06 REMARK 500 NZ LYS A 282 O HOH A 501 2.06 REMARK 500 O HOH A 566 O HOH A 598 2.08 REMARK 500 O HOH C 475 O HOH C 499 2.08 REMARK 500 O SER B 84 O HOH B 401 2.11 REMARK 500 O HOH A 505 O HOH A 635 2.11 REMARK 500 O ALA A 53 NE ARG B 191 2.13 REMARK 500 O HOH A 532 O HOH A 630 2.14 REMARK 500 CB SER C 70 C02 LBX C 301 2.14 REMARK 500 OD1 ASN A 55 ND2 ASN B 55 2.15 REMARK 500 O HOH C 443 O HOH C 485 2.15 REMARK 500 O THR C 27 N ASP C 29 2.18 REMARK 500 NE2 GLN A 267 O HOH A 502 2.18 REMARK 500 OD1 ASN B 89 O HOH B 402 2.18 REMARK 500 O GLY C 144 OG SER C 147 2.19 REMARK 500 OD2 ASP C 54 O HOH C 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLN A 40 ND2 ASN C 89 1565 1.97 REMARK 500 O HOH A 570 O HOH C 443 4456 2.12 REMARK 500 O HOH B 491 O HOH C 506 3545 2.13 REMARK 500 O HOH A 617 O HOH C 465 4456 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 110 CB GLU A 110 CG -0.127 REMARK 500 GLU B 110 CB GLU B 110 CG -0.126 REMARK 500 GLU C 110 CB GLU C 110 CG -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 28 C - N - CA ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG A 39 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 ASN A 104 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 GLU A 110 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS A 282 CB - CG - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG B 39 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 ASN B 104 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 GLU B 110 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS B 282 CB - CG - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 ARG C 39 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 ASN C 104 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU C 110 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG C 254 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 254 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 254 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LYS C 282 CB - CG - CD ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 26 -18.08 156.40 REMARK 500 THR A 27 -111.37 -168.23 REMARK 500 CYS A 69 -138.00 45.54 REMARK 500 ASN A 89 -84.60 -78.42 REMARK 500 LEU A 90 -55.41 57.46 REMARK 500 LYS A 99 -55.32 -20.84 REMARK 500 LEU A 102 99.41 -58.50 REMARK 500 VAL A 103 -165.00 -47.06 REMARK 500 ASN A 104 95.53 -164.88 REMARK 500 ASN A 106 72.13 -154.40 REMARK 500 ASN A 114 15.71 58.43 REMARK 500 SER A 220 -126.34 -103.26 REMARK 500 THR B 27 -167.09 -114.30 REMARK 500 CYS B 69 -137.97 45.58 REMARK 500 ASN B 89 -84.49 -78.48 REMARK 500 LEU B 90 -55.42 57.44 REMARK 500 LYS B 99 -55.30 -20.81 REMARK 500 LEU B 102 99.41 -58.58 REMARK 500 VAL B 103 -165.01 -47.08 REMARK 500 ASN B 104 95.52 -164.91 REMARK 500 ASN B 106 72.12 -154.37 REMARK 500 ASN B 114 15.65 58.38 REMARK 500 SER B 220 -126.43 -103.23 REMARK 500 LEU C 26 154.63 177.04 REMARK 500 THR C 27 167.00 87.72 REMARK 500 ALA C 28 68.67 -25.52 REMARK 500 CYS C 69 -137.97 45.46 REMARK 500 ASN C 89 -84.58 -78.41 REMARK 500 LEU C 90 -55.38 57.46 REMARK 500 LYS C 99 -55.33 -20.79 REMARK 500 LEU C 102 99.41 -58.57 REMARK 500 VAL C 103 -165.00 -47.02 REMARK 500 ASN C 104 95.54 -164.86 REMARK 500 ASN C 106 72.08 -154.41 REMARK 500 ASN C 114 15.70 58.41 REMARK 500 SER C 220 -126.44 -103.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 27 ALA A 28 80.45 REMARK 500 LEU A 102 VAL A 103 141.02 REMARK 500 VAL A 103 ASN A 104 143.20 REMARK 500 ASN A 104 TYR A 105 114.62 REMARK 500 THR B 27 ALA B 28 123.30 REMARK 500 LEU B 102 VAL B 103 141.01 REMARK 500 VAL B 103 ASN B 104 143.27 REMARK 500 ASN B 104 TYR B 105 114.53 REMARK 500 LEU C 102 VAL C 103 141.00 REMARK 500 VAL C 103 ASN C 104 143.23 REMARK 500 ASN C 104 TYR C 105 114.56 REMARK 500 REMARK 500 REMARK: NULL DBREF 7U48 A -2 288 UNP C7S9T0 C7S9T0_ECOLX 21 311 DBREF 7U48 B -2 288 UNP C7S9T0 C7S9T0_ECOLX 21 311 DBREF 7U48 C -2 288 UNP C7S9T0 C7S9T0_ECOLX 21 311 SEQADV 7U48 PRO A 25 UNP C7S9T0 ALA 48 ENGINEERED MUTATION SEQADV 7U48 LEU A 26 UNP C7S9T0 GLN 49 ENGINEERED MUTATION SEQADV 7U48 PRO B 25 UNP C7S9T0 ALA 48 ENGINEERED MUTATION SEQADV 7U48 LEU B 26 UNP C7S9T0 GLN 49 ENGINEERED MUTATION SEQADV 7U48 PRO C 25 UNP C7S9T0 ALA 48 ENGINEERED MUTATION SEQADV 7U48 LEU C 26 UNP C7S9T0 GLN 49 ENGINEERED MUTATION SEQRES 1 A 291 MET VAL LYS LYS SER LEU ARG GLN PHE THR LEU MET ALA SEQRES 2 A 291 THR ALA THR VAL THR LEU LEU LEU GLY SER VAL PRO LEU SEQRES 3 A 291 TYR PRO LEU THR ALA ASP VAL GLN GLN LYS LEU ALA GLU SEQRES 4 A 291 LEU GLU ARG GLN SER GLY GLY ARG LEU GLY VAL ALA LEU SEQRES 5 A 291 ILE ASN THR ALA ASP ASN SER GLN ILE LEU TYR ARG ALA SEQRES 6 A 291 ASP GLU ARG PHE ALA MET CYS SER THR SER LYS VAL MET SEQRES 7 A 291 ALA ALA ALA ALA VAL LEU LYS LYS SER GLU SER GLU PRO SEQRES 8 A 291 ASN LEU LEU ASN GLN ARG VAL GLU ILE LYS LYS SER ASP SEQRES 9 A 291 LEU VAL ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN SEQRES 10 A 291 GLY THR MET SER LEU ALA GLU LEU SER ALA ALA ALA LEU SEQRES 11 A 291 GLN TYR SER ASP ASN VAL ALA MET ASN LYS LEU ILE ALA SEQRES 12 A 291 HIS VAL GLY GLY PRO ALA SER VAL THR ALA PHE ALA ARG SEQRES 13 A 291 GLN LEU GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU SEQRES 14 A 291 PRO THR LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP SEQRES 15 A 291 THR THR SER PRO ARG ALA MET ALA GLN THR LEU ARG ASN SEQRES 16 A 291 LEU THR LEU GLY LYS ALA LEU GLY ASP SER GLN ARG ALA SEQRES 17 A 291 GLN LEU VAL THR TRP MET LYS GLY ASN THR THR GLY ALA SEQRES 18 A 291 ALA SER ILE GLN ALA GLY LEU PRO ALA SER TRP VAL VAL SEQRES 19 A 291 GLY ASP LYS THR GLY SER GLY GLY TYR GLY THR THR ASN SEQRES 20 A 291 ASP ILE ALA VAL ILE TRP PRO LYS ASP ARG ALA PRO LEU SEQRES 21 A 291 ILE LEU VAL THR TYR PHE THR GLN PRO GLN PRO LYS ALA SEQRES 22 A 291 GLU SER ARG ARG ASP VAL LEU ALA SER ALA ALA LYS ILE SEQRES 23 A 291 VAL THR ASP GLY LEU SEQRES 1 B 291 MET VAL LYS LYS SER LEU ARG GLN PHE THR LEU MET ALA SEQRES 2 B 291 THR ALA THR VAL THR LEU LEU LEU GLY SER VAL PRO LEU SEQRES 3 B 291 TYR PRO LEU THR ALA ASP VAL GLN GLN LYS LEU ALA GLU SEQRES 4 B 291 LEU GLU ARG GLN SER GLY GLY ARG LEU GLY VAL ALA LEU SEQRES 5 B 291 ILE ASN THR ALA ASP ASN SER GLN ILE LEU TYR ARG ALA SEQRES 6 B 291 ASP GLU ARG PHE ALA MET CYS SER THR SER LYS VAL MET SEQRES 7 B 291 ALA ALA ALA ALA VAL LEU LYS LYS SER GLU SER GLU PRO SEQRES 8 B 291 ASN LEU LEU ASN GLN ARG VAL GLU ILE LYS LYS SER ASP SEQRES 9 B 291 LEU VAL ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN SEQRES 10 B 291 GLY THR MET SER LEU ALA GLU LEU SER ALA ALA ALA LEU SEQRES 11 B 291 GLN TYR SER ASP ASN VAL ALA MET ASN LYS LEU ILE ALA SEQRES 12 B 291 HIS VAL GLY GLY PRO ALA SER VAL THR ALA PHE ALA ARG SEQRES 13 B 291 GLN LEU GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU SEQRES 14 B 291 PRO THR LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP SEQRES 15 B 291 THR THR SER PRO ARG ALA MET ALA GLN THR LEU ARG ASN SEQRES 16 B 291 LEU THR LEU GLY LYS ALA LEU GLY ASP SER GLN ARG ALA SEQRES 17 B 291 GLN LEU VAL THR TRP MET LYS GLY ASN THR THR GLY ALA SEQRES 18 B 291 ALA SER ILE GLN ALA GLY LEU PRO ALA SER TRP VAL VAL SEQRES 19 B 291 GLY ASP LYS THR GLY SER GLY GLY TYR GLY THR THR ASN SEQRES 20 B 291 ASP ILE ALA VAL ILE TRP PRO LYS ASP ARG ALA PRO LEU SEQRES 21 B 291 ILE LEU VAL THR TYR PHE THR GLN PRO GLN PRO LYS ALA SEQRES 22 B 291 GLU SER ARG ARG ASP VAL LEU ALA SER ALA ALA LYS ILE SEQRES 23 B 291 VAL THR ASP GLY LEU SEQRES 1 C 291 MET VAL LYS LYS SER LEU ARG GLN PHE THR LEU MET ALA SEQRES 2 C 291 THR ALA THR VAL THR LEU LEU LEU GLY SER VAL PRO LEU SEQRES 3 C 291 TYR PRO LEU THR ALA ASP VAL GLN GLN LYS LEU ALA GLU SEQRES 4 C 291 LEU GLU ARG GLN SER GLY GLY ARG LEU GLY VAL ALA LEU SEQRES 5 C 291 ILE ASN THR ALA ASP ASN SER GLN ILE LEU TYR ARG ALA SEQRES 6 C 291 ASP GLU ARG PHE ALA MET CYS SER THR SER LYS VAL MET SEQRES 7 C 291 ALA ALA ALA ALA VAL LEU LYS LYS SER GLU SER GLU PRO SEQRES 8 C 291 ASN LEU LEU ASN GLN ARG VAL GLU ILE LYS LYS SER ASP SEQRES 9 C 291 LEU VAL ASN TYR ASN PRO ILE ALA GLU LYS HIS VAL ASN SEQRES 10 C 291 GLY THR MET SER LEU ALA GLU LEU SER ALA ALA ALA LEU SEQRES 11 C 291 GLN TYR SER ASP ASN VAL ALA MET ASN LYS LEU ILE ALA SEQRES 12 C 291 HIS VAL GLY GLY PRO ALA SER VAL THR ALA PHE ALA ARG SEQRES 13 C 291 GLN LEU GLY ASP GLU THR PHE ARG LEU ASP ARG THR GLU SEQRES 14 C 291 PRO THR LEU ASN THR ALA ILE PRO GLY ASP PRO ARG ASP SEQRES 15 C 291 THR THR SER PRO ARG ALA MET ALA GLN THR LEU ARG ASN SEQRES 16 C 291 LEU THR LEU GLY LYS ALA LEU GLY ASP SER GLN ARG ALA SEQRES 17 C 291 GLN LEU VAL THR TRP MET LYS GLY ASN THR THR GLY ALA SEQRES 18 C 291 ALA SER ILE GLN ALA GLY LEU PRO ALA SER TRP VAL VAL SEQRES 19 C 291 GLY ASP LYS THR GLY SER GLY GLY TYR GLY THR THR ASN SEQRES 20 C 291 ASP ILE ALA VAL ILE TRP PRO LYS ASP ARG ALA PRO LEU SEQRES 21 C 291 ILE LEU VAL THR TYR PHE THR GLN PRO GLN PRO LYS ALA SEQRES 22 C 291 GLU SER ARG ARG ASP VAL LEU ALA SER ALA ALA LYS ILE SEQRES 23 C 291 VAL THR ASP GLY LEU HET GOL A 401 6 HET LBX A 402 14 HET SO4 A 403 5 HET GOL A 404 6 HET LBX B 301 14 HET SO4 B 302 5 HET LBX C 301 14 HET SO4 C 302 5 HET SO4 C 303 5 HETNAM GOL GLYCEROL HETNAM LBX (E)-5-HYDROXY-3-OXO-N-(3-OXOPROPYLIDENE)-L-NORVALINE HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 LBX 3(C8 H11 N O5) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *375(H2 O) HELIX 1 AA1 ALA A 28 GLY A 42 1 15 HELIX 2 AA2 THR A 71 GLU A 85 1 15 HELIX 3 AA3 LYS A 98 LEU A 102 5 5 HELIX 4 AA4 ILE A 108 VAL A 113 5 6 HELIX 5 AA5 LEU A 119 SER A 130 1 12 HELIX 6 AA6 ASP A 131 GLY A 143 1 13 HELIX 7 AA7 GLY A 144 LEU A 155 1 12 HELIX 8 AA8 PRO A 167 THR A 171 5 5 HELIX 9 AA9 SER A 182 LEU A 195 1 14 HELIX 10 AB1 GLY A 200 GLY A 213 1 14 HELIX 11 AB2 SER A 220 LEU A 225 5 6 HELIX 12 AB3 ARG A 273 ASP A 286 1 14 HELIX 13 AB4 ALA B 28 GLY B 42 1 15 HELIX 14 AB5 THR B 71 GLU B 85 1 15 HELIX 15 AB6 LYS B 98 LEU B 102 5 5 HELIX 16 AB7 ILE B 108 VAL B 113 5 6 HELIX 17 AB8 LEU B 119 SER B 130 1 12 HELIX 18 AB9 ASP B 131 GLY B 143 1 13 HELIX 19 AC1 GLY B 144 LEU B 155 1 12 HELIX 20 AC2 PRO B 167 THR B 171 5 5 HELIX 21 AC3 SER B 182 LEU B 195 1 14 HELIX 22 AC4 GLY B 200 GLY B 213 1 14 HELIX 23 AC5 SER B 220 LEU B 225 5 6 HELIX 24 AC6 ARG B 273 ASP B 286 1 14 HELIX 25 AC7 ALA C 28 GLY C 42 1 15 HELIX 26 AC8 THR C 71 GLU C 85 1 15 HELIX 27 AC9 LYS C 98 LEU C 102 5 5 HELIX 28 AD1 ILE C 108 VAL C 113 5 6 HELIX 29 AD2 LEU C 119 SER C 130 1 12 HELIX 30 AD3 ASP C 131 GLY C 143 1 13 HELIX 31 AD4 GLY C 144 LEU C 155 1 12 HELIX 32 AD5 PRO C 167 THR C 171 5 5 HELIX 33 AD6 SER C 182 LEU C 195 1 14 HELIX 34 AD7 GLY C 200 GLY C 213 1 14 HELIX 35 AD8 SER C 220 LEU C 225 5 6 HELIX 36 AD9 ARG C 273 ASP C 286 1 14 SHEET 1 AA1 5 GLN A 57 TYR A 60 0 SHEET 2 AA1 5 ARG A 44 ASN A 51 -1 N LEU A 49 O ILE A 58 SHEET 3 AA1 5 LEU A 257 THR A 264 -1 O THR A 264 N ARG A 44 SHEET 4 AA1 5 THR A 242 TRP A 250 -1 N ILE A 249 O LEU A 257 SHEET 5 AA1 5 VAL A 230 GLY A 238 -1 N GLY A 236 O ASN A 244 SHEET 1 AA2 2 PHE A 66 ALA A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 GLU A 96 0 SHEET 2 AA3 2 THR A 116 SER A 118 -1 O MET A 117 N VAL A 95 SHEET 1 AA4 5 GLN B 57 TYR B 60 0 SHEET 2 AA4 5 ARG B 44 ASN B 51 -1 N LEU B 49 O ILE B 58 SHEET 3 AA4 5 LEU B 257 THR B 264 -1 O THR B 264 N ARG B 44 SHEET 4 AA4 5 THR B 242 TRP B 250 -1 N ILE B 249 O LEU B 257 SHEET 5 AA4 5 VAL B 230 GLY B 238 -1 N GLY B 236 O ASN B 244 SHEET 1 AA5 2 PHE B 66 ALA B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 ARG B 94 GLU B 96 0 SHEET 2 AA6 2 THR B 116 SER B 118 -1 O MET B 117 N VAL B 95 SHEET 1 AA7 5 GLN C 57 TYR C 60 0 SHEET 2 AA7 5 ARG C 44 ASN C 51 -1 N LEU C 49 O ILE C 58 SHEET 3 AA7 5 LEU C 257 THR C 264 -1 O THR C 264 N ARG C 44 SHEET 4 AA7 5 THR C 242 TRP C 250 -1 N ILE C 249 O LEU C 257 SHEET 5 AA7 5 VAL C 230 GLY C 238 -1 N GLY C 236 O ASN C 244 SHEET 1 AA8 2 PHE C 66 ALA C 67 0 SHEET 2 AA8 2 THR C 180 THR C 181 -1 O THR C 181 N PHE C 66 SHEET 1 AA9 2 ARG C 94 GLU C 96 0 SHEET 2 AA9 2 THR C 116 SER C 118 -1 O MET C 117 N VAL C 95 LINK OG SER A 70 C02 LBX A 402 1555 1555 1.39 LINK OG SER B 70 C02 LBX B 301 1555 1555 1.40 LINK OG SER C 70 C02 LBX C 301 1555 1555 1.40 CISPEP 1 GLU A 166 PRO A 167 0 5.82 CISPEP 2 GLU B 166 PRO B 167 0 5.87 CISPEP 3 GLU C 166 PRO C 167 0 5.81 CRYST1 170.692 50.976 106.699 90.00 113.23 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005859 0.000000 0.002515 0.00000 SCALE2 0.000000 0.019617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010199 0.00000