HEADER DNA BINDING PROTEIN/DNA 04-MAR-22 7U6K TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE TITLE 3 COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP COMPND 4 *CP*TP*CP*AP*GP*AP*CP*GP*G)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(A*GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP COMPND 10 *AP*CP*AP*GP*GP*TP*CP*CP*G)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.WARD,C.D.SNOW REVDAT 3 01-NOV-23 7U6K 1 JRNL REVDAT 2 25-OCT-23 7U6K 1 REMARK REVDAT 1 29-MAR-23 7U6K 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6200 - 6.3400 0.96 1338 147 0.1713 0.1714 REMARK 3 2 6.3400 - 5.0400 1.00 1336 152 0.1494 0.1916 REMARK 3 3 5.0400 - 4.4000 1.00 1324 144 0.1401 0.1832 REMARK 3 4 4.4000 - 4.0000 1.00 1307 145 0.1419 0.1709 REMARK 3 5 4.0000 - 3.7100 1.00 1313 142 0.1693 0.2472 REMARK 3 6 3.7100 - 3.4900 1.00 1276 145 0.1688 0.2010 REMARK 3 7 3.4900 - 3.3200 0.99 1297 138 0.1626 0.1956 REMARK 3 8 3.3200 - 3.1800 1.00 1271 138 0.1851 0.2330 REMARK 3 9 3.1800 - 3.0500 1.00 1301 143 0.2400 0.2980 REMARK 3 10 3.0500 - 2.9500 1.00 1293 140 0.2608 0.3104 REMARK 3 11 2.9500 - 2.8600 1.00 1294 148 0.2497 0.3154 REMARK 3 12 2.8600 - 2.7700 1.00 1261 141 0.2528 0.3717 REMARK 3 13 2.7700 - 2.7000 1.00 1285 142 0.2494 0.3185 REMARK 3 14 2.7000 - 2.6400 1.00 1280 143 0.2553 0.3026 REMARK 3 15 2.6300 - 2.5800 1.00 1278 150 0.2634 0.3489 REMARK 3 16 2.5700 - 2.5200 1.00 1294 134 0.2768 0.3148 REMARK 3 17 2.5200 - 2.4700 1.00 1254 154 0.2684 0.3154 REMARK 3 18 2.4700 - 2.4200 1.00 1269 133 0.2936 0.3528 REMARK 3 19 2.4200 - 2.3800 0.99 1277 140 0.3046 0.3709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.321 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3261 REMARK 3 ANGLE : 1.205 4679 REMARK 3 CHIRALITY : 0.067 508 REMARK 3 PLANARITY : 0.008 382 REMARK 3 DIHEDRAL : 27.301 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2944 -8.3441 0.7565 REMARK 3 T TENSOR REMARK 3 T11: 0.4833 T22: 0.5039 REMARK 3 T33: 0.5270 T12: 0.0816 REMARK 3 T13: 0.0345 T23: -0.1592 REMARK 3 L TENSOR REMARK 3 L11: 1.9522 L22: 6.3245 REMARK 3 L33: 5.3111 L12: 0.8317 REMARK 3 L13: -0.7278 L23: 2.8635 REMARK 3 S TENSOR REMARK 3 S11: -0.1892 S12: -0.0662 S13: 0.2703 REMARK 3 S21: 0.3015 S22: -0.0184 S23: -0.0671 REMARK 3 S31: -0.1241 S32: -0.2557 S33: 0.0689 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0999 -41.4230 -31.7931 REMARK 3 T TENSOR REMARK 3 T11: 1.4023 T22: 1.1663 REMARK 3 T33: 1.0400 T12: 0.2667 REMARK 3 T13: 0.4667 T23: -0.4392 REMARK 3 L TENSOR REMARK 3 L11: 1.0823 L22: -0.0219 REMARK 3 L33: 2.0014 L12: 0.1529 REMARK 3 L13: -0.3669 L23: 0.1058 REMARK 3 S TENSOR REMARK 3 S11: 0.6602 S12: 0.8862 S13: -0.3106 REMARK 3 S21: -1.1792 S22: -0.3208 S23: -0.8585 REMARK 3 S31: 0.2552 S32: 0.2059 S33: -0.1780 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2350 -43.7476 -35.1216 REMARK 3 T TENSOR REMARK 3 T11: 1.4362 T22: 1.2600 REMARK 3 T33: 1.1484 T12: 0.2859 REMARK 3 T13: 0.3773 T23: -0.4621 REMARK 3 L TENSOR REMARK 3 L11: 1.8967 L22: 2.6578 REMARK 3 L33: 2.1922 L12: -2.1820 REMARK 3 L13: -2.0670 L23: 2.3645 REMARK 3 S TENSOR REMARK 3 S11: 0.7793 S12: 0.5699 S13: 0.0493 REMARK 3 S21: -1.0227 S22: -0.4140 S23: -0.1919 REMARK 3 S31: -0.2217 S32: 0.3068 S33: -0.3601 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1083 -12.1039 -2.0278 REMARK 3 T TENSOR REMARK 3 T11: 0.5050 T22: 0.4830 REMARK 3 T33: 0.4777 T12: -0.0287 REMARK 3 T13: 0.1396 T23: -0.1521 REMARK 3 L TENSOR REMARK 3 L11: 2.3285 L22: 4.5640 REMARK 3 L33: 0.9243 L12: -0.0327 REMARK 3 L13: 1.2786 L23: -1.0797 REMARK 3 S TENSOR REMARK 3 S11: -0.1662 S12: -0.2881 S13: 0.1539 REMARK 3 S21: 0.3937 S22: 0.1462 S23: -0.0236 REMARK 3 S31: -0.2962 S32: 0.0077 S33: 0.0479 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8313 -46.9645 -14.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.7039 T22: 0.5812 REMARK 3 T33: 1.0440 T12: -0.0394 REMARK 3 T13: 0.2141 T23: -0.3492 REMARK 3 L TENSOR REMARK 3 L11: 3.2591 L22: 1.7842 REMARK 3 L33: 5.5415 L12: -0.5781 REMARK 3 L13: -2.0663 L23: 0.7342 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.4304 S13: -1.0736 REMARK 3 S21: -0.5628 S22: -0.0578 S23: -0.0752 REMARK 3 S31: 0.4269 S32: 0.0215 S33: 0.0981 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5272 -48.0647 -6.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.6152 T22: 0.5810 REMARK 3 T33: 1.0033 T12: 0.0001 REMARK 3 T13: 0.2823 T23: -0.1743 REMARK 3 L TENSOR REMARK 3 L11: 2.3000 L22: 4.1565 REMARK 3 L33: 2.0784 L12: -1.1908 REMARK 3 L13: 2.1699 L23: -1.1175 REMARK 3 S TENSOR REMARK 3 S11: -0.2191 S12: 0.0814 S13: -1.2412 REMARK 3 S21: -0.0873 S22: 0.1620 S23: -0.2639 REMARK 3 S31: 0.8749 S32: 0.3483 S33: 0.0077 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3258 -31.0123 -7.7304 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.5054 REMARK 3 T33: 0.7104 T12: -0.0177 REMARK 3 T13: 0.0939 T23: -0.1192 REMARK 3 L TENSOR REMARK 3 L11: 7.9840 L22: 9.1086 REMARK 3 L33: 2.8718 L12: 2.0992 REMARK 3 L13: 1.4461 L23: 2.2076 REMARK 3 S TENSOR REMARK 3 S11: -0.1837 S12: 0.4709 S13: -0.4608 REMARK 3 S21: -0.3309 S22: -0.0836 S23: 0.7812 REMARK 3 S31: 0.0943 S32: -0.9111 S33: 0.4473 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4794 -38.0670 -5.2852 REMARK 3 T TENSOR REMARK 3 T11: 0.4416 T22: 0.5295 REMARK 3 T33: 0.7498 T12: -0.0786 REMARK 3 T13: 0.1746 T23: -0.1952 REMARK 3 L TENSOR REMARK 3 L11: 3.3727 L22: 3.4896 REMARK 3 L33: 1.9457 L12: -1.0901 REMARK 3 L13: -0.5591 L23: -1.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.1847 S12: -0.0183 S13: -0.8586 REMARK 3 S21: -0.1532 S22: 0.0022 S23: 0.3992 REMARK 3 S31: 0.4285 S32: -0.3355 S33: 0.1271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7U6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27319 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 38.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.15600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7RVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM MGCL2, 24% PEG 400, AND 80 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.63050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.03300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.49300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.63050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.03300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.49300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.63050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.03300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.49300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.63050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.03300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.49300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA A 1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 1 C2 N3 C4 REMARK 470 DA B 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA B 1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 1 C2 N3 C4 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL C 94 CB VAL C 94 CG2 -0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DC B 23 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 108.66 -50.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 OP1 REMARK 620 2 HOH A 212 O 86.7 REMARK 620 3 HOH A 226 O 93.8 167.8 REMARK 620 4 HOH A 228 O 84.1 75.5 116.7 REMARK 620 5 HOH A 231 O 97.3 81.6 86.3 157.0 REMARK 620 6 HOH B 211 O 173.1 100.2 79.8 96.3 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 19 OP1 REMARK 620 2 HOH A 229 O 99.1 REMARK 620 3 HOH A 232 O 120.3 77.2 REMARK 620 4 HOH A 234 O 134.7 107.4 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 220 O REMARK 620 2 HOH B 201 O 148.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 204 O REMARK 620 2 HOH A 205 O 72.6 REMARK 620 3 HOH A 207 O 81.5 85.0 REMARK 620 4 DG B 27 OP1 101.3 164.0 79.4 REMARK 620 5 HOH B 214 O 166.5 100.2 86.5 82.5 REMARK 620 6 HOH B 218 O 96.2 97.8 175.7 97.5 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 GLU C 77 OE2 77.1 REMARK 620 3 ASP C 81 OD1 129.7 86.7 REMARK 620 4 HOH C 411 O 83.6 130.1 71.3 REMARK 620 5 HOH C 412 O 56.7 63.3 73.5 67.6 REMARK 620 6 HOH C 420 O 144.8 135.7 74.0 81.0 140.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 27 OP2 REMARK 620 2 HOH B 202 O 88.3 REMARK 620 3 HOH B 203 O 83.1 16.1 REMARK 620 4 HOH B 205 O 99.1 13.0 17.9 REMARK 620 5 HOH B 207 O 79.2 9.3 13.8 20.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED TO A SHORTER DNA DUPLEX. DBREF 7U6K A 1 32 PDB 7U6K 7U6K 1 32 DBREF 7U6K B 1 32 PDB 7U6K 7U6K 1 32 DBREF 7U6K C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 7U6K MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7U6K ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7U6K GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7U6K SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7U6K HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7U6K GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7U6K SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7U6K PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 32 DA DC DC DC DG DG DA DC DC DT DG DT DG SEQRES 2 A 32 DA DC DA DA DA DT DT DG DC DC DC DT DC SEQRES 3 A 32 DA DG DA DC DG DG SEQRES 1 B 32 DA DG DG DC DC DG DT DC DT DG DA DG DG SEQRES 2 B 32 DG DC DA DA DT DT DT DG DT DC DA DC DA SEQRES 3 B 32 DG DG DT DC DC DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG A 101 1 HET MG A 102 1 HET MG A 103 1 HET MG B 101 1 HET MG B 102 1 HET MG C 301 1 HET MG C 302 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 7(MG 2+) FORMUL 11 HOH *99(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 TYR C 192 1 8 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 2 ILE C 59 HIS C 63 0 SHEET 2 AA2 2 LEU C 126 HIS C 130 -1 O TYR C 127 N ILE C 62 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ILE C 227 O VAL C 239 LINK OP1 DC A 4 MG MG A 103 1555 1555 2.40 LINK OP1 DT A 19 MG MG A 102 1555 1555 2.21 LINK MG MG A 101 O HOH A 220 1555 1555 2.07 LINK MG MG A 101 O HOH B 201 1555 2455 2.17 LINK MG MG A 102 O HOH A 229 1555 1555 2.39 LINK MG MG A 102 O HOH A 232 1555 1555 2.16 LINK MG MG A 102 O HOH A 234 1555 1555 2.45 LINK MG MG A 103 O HOH A 212 1555 4555 2.11 LINK MG MG A 103 O HOH A 226 1555 1555 2.26 LINK MG MG A 103 O HOH A 228 1555 1555 2.75 LINK MG MG A 103 O HOH A 231 1555 4555 2.51 LINK MG MG A 103 O HOH B 211 1555 4555 1.90 LINK O HOH A 204 MG MG B 101 4555 1555 2.33 LINK O HOH A 205 MG MG B 101 4555 1555 2.15 LINK O HOH A 207 MG MG B 101 4555 1555 2.22 LINK O HOH A 208 MG MG C 301 1555 1555 2.30 LINK OP1 DG B 27 MG MG B 101 1555 1555 2.19 LINK OP2 DG B 27 MG MG B 102 1555 4555 2.29 LINK MG MG B 101 O HOH B 214 1555 1555 2.19 LINK MG MG B 101 O HOH B 218 1555 1555 1.91 LINK MG MG B 102 O HOH B 202 1555 4555 2.66 LINK MG MG B 102 O HOH B 203 1555 1555 2.59 LINK MG MG B 102 O HOH B 205 1555 4555 2.08 LINK MG MG B 102 O HOH B 207 1555 4555 2.10 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.20 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.36 LINK MG MG C 301 O HOH C 411 1555 1555 2.33 LINK MG MG C 301 O HOH C 412 1555 1555 2.92 LINK MG MG C 301 O HOH C 420 1555 1555 2.47 CRYST1 75.261 132.066 134.986 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007408 0.00000