HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-MAR-22 7U9I TITLE CO-CRYSTAL STRUCTURE OF HUMAN CARM1 IN COMPLEX WITH MT556 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-ARGININE METHYLTRANSFERASE CARM1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COACTIVATOR-ASSOCIATED ARGININE METHYLTRANSFERASE 1,PROTEIN COMPND 5 ARGININE N-METHYLTRANSFERASE 4; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARM1, PRMT4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS MTASE, HISTONE ARGININE METHYLTRANSFERASE, PRMT4, CARM1, SGC, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.ZENG,S.PERVEEN,A.DONG,A.HUTCHINSON,A.SEITOVA,E.GIBSON,T.HAJIAN, AUTHOR 2 Y.LI,Y.D.GAO,S.SCHNEIDER,P.SILIPHAIVANH,D.SLOMAN,B.NICHOLSON, AUTHOR 3 C.FISCHER,J.HICKS,M.VEDADI,P.J.BROWN,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 4 L.HALABELIAN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 25-OCT-23 7U9I 1 REMARK REVDAT 1 18-JAN-23 7U9I 0 JRNL AUTH H.ZENG,S.PERVEEN,A.DONG,A.HUTCHINSON,A.SEITOVA,E.GIBSON, JRNL AUTH 2 T.HAJIAN,Y.LI,Y.D.GAO,S.SCHNEIDER,P.SILIPHAIVANH,D.SLOMAN, JRNL AUTH 3 B.NICHOLSON,C.FISCHER,J.HICKS,M.VEDADI,P.J.BROWN, JRNL AUTH 4 C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN, JRNL AUTH 5 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CO-CRYSTAL STRUCTURE OF HUMAN CARM1 IN COMPLEX WITH MT556 JRNL TITL 2 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 47040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5419 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4869 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7366 ; 1.507 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11271 ; 1.315 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 660 ; 7.160 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;33.746 ;23.022 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 860 ;14.467 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6240 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1183 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7U9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49481 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M DI-SODIUM TARTRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.13450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.09850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.39750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.13450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.09850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 103.39750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.13450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.09850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.39750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.13450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.09850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.39750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 GLN A 148 REMARK 465 THR A 477 REMARK 465 GLY A 478 REMARK 465 THR A 479 REMARK 465 THR A 480 REMARK 465 PRO A 481 REMARK 465 SER A 482 REMARK 465 PRO A 483 REMARK 465 PRO A 484 REMARK 465 PRO A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 HIS A 488 REMARK 465 TYR A 489 REMARK 465 GLY B 145 REMARK 465 ALA B 146 REMARK 465 VAL B 147 REMARK 465 GLN B 148 REMARK 465 TYR B 149 REMARK 465 PHE B 150 REMARK 465 THR B 477 REMARK 465 GLY B 478 REMARK 465 THR B 479 REMARK 465 THR B 480 REMARK 465 PRO B 481 REMARK 465 SER B 482 REMARK 465 PRO B 483 REMARK 465 PRO B 484 REMARK 465 PRO B 485 REMARK 465 GLY B 486 REMARK 465 SER B 487 REMARK 465 HIS B 488 REMARK 465 TYR B 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 150 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 ARG A 208 NE CZ NH1 NH2 REMARK 470 SER A 282 OG REMARK 470 ARG A 327 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 351 CE NZ REMARK 470 LYS A 363 CE NZ REMARK 470 LYS A 429 CE NZ REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 446 CG CD OE1 NE2 REMARK 470 LYS A 462 CE NZ REMARK 470 LYS A 470 CE NZ REMARK 470 LYS B 184 CE NZ REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 227 CD CE NZ REMARK 470 LYS B 241 NZ REMARK 470 GLN B 301 CG CD OE1 NE2 REMARK 470 LYS B 375 CD CE NZ REMARK 470 LYS B 429 CE NZ REMARK 470 LYS B 444 CD CE NZ REMARK 470 ARG B 445 CD NE CZ NH1 NH2 REMARK 470 LYS B 462 CD CE NZ REMARK 470 LYS B 470 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 410 O HOH B 601 2.07 REMARK 500 OD2 ASP A 432 O HOH A 601 2.08 REMARK 500 OE2 GLU A 333 O HOH A 602 2.14 REMARK 500 OE1 GLU A 364 O HOH A 603 2.19 REMARK 500 O HOH A 700 O HOH B 708 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 234 -44.49 -134.89 REMARK 500 LEU A 263 -50.12 69.17 REMARK 500 GLU A 266 -13.71 87.26 REMARK 500 ASP A 299 94.14 -165.97 REMARK 500 SER A 317 67.56 -153.59 REMARK 500 TYR A 416 -134.91 48.24 REMARK 500 LYS B 184 107.57 -48.04 REMARK 500 LEU B 263 -53.23 72.12 REMARK 500 GLU B 266 -15.11 86.16 REMARK 500 ASP B 299 79.40 -157.70 REMARK 500 ASP B 341 -169.54 -174.47 REMARK 500 TYR B 416 -139.70 49.14 REMARK 500 ASN B 471 62.22 -118.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7U9I A 146 489 UNP Q86X55 CARM1_HUMAN 146 489 DBREF 7U9I B 146 489 UNP Q86X55 CARM1_HUMAN 146 489 SEQADV 7U9I GLY A 145 UNP Q86X55 EXPRESSION TAG SEQADV 7U9I GLY B 145 UNP Q86X55 EXPRESSION TAG SEQRES 1 A 345 GLY ALA VAL GLN TYR PHE GLN PHE TYR GLY TYR LEU SER SEQRES 2 A 345 GLN GLN GLN ASN MET MET GLN ASP TYR VAL ARG THR GLY SEQRES 3 A 345 THR TYR GLN ARG ALA ILE LEU GLN ASN HIS THR ASP PHE SEQRES 4 A 345 LYS ASP LYS ILE VAL LEU ASP VAL GLY CYS GLY SER GLY SEQRES 5 A 345 ILE LEU SER PHE PHE ALA ALA GLN ALA GLY ALA ARG LYS SEQRES 6 A 345 ILE TYR ALA VAL GLU ALA SER THR MET ALA GLN HIS ALA SEQRES 7 A 345 GLU VAL LEU VAL LYS SER ASN ASN LEU THR ASP ARG ILE SEQRES 8 A 345 VAL VAL ILE PRO GLY LYS VAL GLU GLU VAL SER LEU PRO SEQRES 9 A 345 GLU GLN VAL ASP ILE ILE ILE SER GLU PRO MET GLY TYR SEQRES 10 A 345 MET LEU PHE ASN GLU ARG MET LEU GLU SER TYR LEU HIS SEQRES 11 A 345 ALA LYS LYS TYR LEU LYS PRO SER GLY ASN MET PHE PRO SEQRES 12 A 345 THR ILE GLY ASP VAL HIS LEU ALA PRO PHE THR ASP GLU SEQRES 13 A 345 GLN LEU TYR MET GLU GLN PHE THR LYS ALA ASN PHE TRP SEQRES 14 A 345 TYR GLN PRO SER PHE HIS GLY VAL ASP LEU SER ALA LEU SEQRES 15 A 345 ARG GLY ALA ALA VAL ASP GLU TYR PHE ARG GLN PRO VAL SEQRES 16 A 345 VAL ASP THR PHE ASP ILE ARG ILE LEU MET ALA LYS SER SEQRES 17 A 345 VAL LYS TYR THR VAL ASN PHE LEU GLU ALA LYS GLU GLY SEQRES 18 A 345 ASP LEU HIS ARG ILE GLU ILE PRO PHE LYS PHE HIS MET SEQRES 19 A 345 LEU HIS SER GLY LEU VAL HIS GLY LEU ALA PHE TRP PHE SEQRES 20 A 345 ASP VAL ALA PHE ILE GLY SER ILE MET THR VAL TRP LEU SEQRES 21 A 345 SER THR ALA PRO THR GLU PRO LEU THR HIS TRP TYR GLN SEQRES 22 A 345 VAL ARG CYS LEU PHE GLN SER PRO LEU PHE ALA LYS ALA SEQRES 23 A 345 GLY ASP THR LEU SER GLY THR CYS LEU LEU ILE ALA ASN SEQRES 24 A 345 LYS ARG GLN SER TYR ASP ILE SER ILE VAL ALA GLN VAL SEQRES 25 A 345 ASP GLN THR GLY SER LYS SER SER ASN LEU LEU ASP LEU SEQRES 26 A 345 LYS ASN PRO PHE PHE ARG TYR THR GLY THR THR PRO SER SEQRES 27 A 345 PRO PRO PRO GLY SER HIS TYR SEQRES 1 B 345 GLY ALA VAL GLN TYR PHE GLN PHE TYR GLY TYR LEU SER SEQRES 2 B 345 GLN GLN GLN ASN MET MET GLN ASP TYR VAL ARG THR GLY SEQRES 3 B 345 THR TYR GLN ARG ALA ILE LEU GLN ASN HIS THR ASP PHE SEQRES 4 B 345 LYS ASP LYS ILE VAL LEU ASP VAL GLY CYS GLY SER GLY SEQRES 5 B 345 ILE LEU SER PHE PHE ALA ALA GLN ALA GLY ALA ARG LYS SEQRES 6 B 345 ILE TYR ALA VAL GLU ALA SER THR MET ALA GLN HIS ALA SEQRES 7 B 345 GLU VAL LEU VAL LYS SER ASN ASN LEU THR ASP ARG ILE SEQRES 8 B 345 VAL VAL ILE PRO GLY LYS VAL GLU GLU VAL SER LEU PRO SEQRES 9 B 345 GLU GLN VAL ASP ILE ILE ILE SER GLU PRO MET GLY TYR SEQRES 10 B 345 MET LEU PHE ASN GLU ARG MET LEU GLU SER TYR LEU HIS SEQRES 11 B 345 ALA LYS LYS TYR LEU LYS PRO SER GLY ASN MET PHE PRO SEQRES 12 B 345 THR ILE GLY ASP VAL HIS LEU ALA PRO PHE THR ASP GLU SEQRES 13 B 345 GLN LEU TYR MET GLU GLN PHE THR LYS ALA ASN PHE TRP SEQRES 14 B 345 TYR GLN PRO SER PHE HIS GLY VAL ASP LEU SER ALA LEU SEQRES 15 B 345 ARG GLY ALA ALA VAL ASP GLU TYR PHE ARG GLN PRO VAL SEQRES 16 B 345 VAL ASP THR PHE ASP ILE ARG ILE LEU MET ALA LYS SER SEQRES 17 B 345 VAL LYS TYR THR VAL ASN PHE LEU GLU ALA LYS GLU GLY SEQRES 18 B 345 ASP LEU HIS ARG ILE GLU ILE PRO PHE LYS PHE HIS MET SEQRES 19 B 345 LEU HIS SER GLY LEU VAL HIS GLY LEU ALA PHE TRP PHE SEQRES 20 B 345 ASP VAL ALA PHE ILE GLY SER ILE MET THR VAL TRP LEU SEQRES 21 B 345 SER THR ALA PRO THR GLU PRO LEU THR HIS TRP TYR GLN SEQRES 22 B 345 VAL ARG CYS LEU PHE GLN SER PRO LEU PHE ALA LYS ALA SEQRES 23 B 345 GLY ASP THR LEU SER GLY THR CYS LEU LEU ILE ALA ASN SEQRES 24 B 345 LYS ARG GLN SER TYR ASP ILE SER ILE VAL ALA GLN VAL SEQRES 25 B 345 ASP GLN THR GLY SER LYS SER SER ASN LEU LEU ASP LEU SEQRES 26 B 345 LYS ASN PRO PHE PHE ARG TYR THR GLY THR THR PRO SER SEQRES 27 B 345 PRO PRO PRO GLY SER HIS TYR HET 44T A 501 33 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET 44T B 501 33 HET UNX B 502 1 HET UNX B 503 1 HET UNX B 504 1 HET UNX B 505 1 HET UNX B 506 1 HET UNX B 507 1 HET UNX B 508 1 HET UNX B 509 1 HET UNX B 510 1 HET UNX B 511 1 HET UNX B 512 1 HETNAM 44T 7-[5-S-(4-{[(4-ETHYLPYRIDIN-3-YL)METHYL]AMINO}BUTYL)-5- HETNAM 2 44T THIO-BETA-D-RIBOFURANOSYL]-7H-PYRROLO[2,3-D]PYRIMIDIN- HETNAM 3 44T 4-AMINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 44T 2(C23 H32 N6 O3 S) FORMUL 4 UNX 14(X) FORMUL 19 HOH *209(H2 O) HELIX 1 AA1 GLN A 151 GLY A 154 5 4 HELIX 2 AA2 TYR A 155 GLN A 164 1 10 HELIX 3 AA3 ASP A 165 GLN A 178 1 14 HELIX 4 AA4 ASN A 179 PHE A 183 5 5 HELIX 5 AA5 GLY A 196 ALA A 205 1 10 HELIX 6 AA6 THR A 217 ASN A 229 1 13 HELIX 7 AA7 MET A 268 ALA A 275 1 8 HELIX 8 AA8 ASP A 299 ASN A 311 1 13 HELIX 9 AA9 PHE A 312 GLN A 315 5 4 HELIX 10 AB1 SER A 317 VAL A 321 5 5 HELIX 11 AB2 LEU A 323 ALA A 325 5 3 HELIX 12 AB3 LEU A 326 ARG A 336 1 11 HELIX 13 AB4 ASP A 344 LEU A 348 5 5 HELIX 14 AB5 LYS A 363 LEU A 367 5 5 HELIX 15 AB6 GLN B 151 GLY B 154 5 4 HELIX 16 AB7 TYR B 155 ASP B 165 1 11 HELIX 17 AB8 ASP B 165 GLN B 178 1 14 HELIX 18 AB9 ASN B 179 PHE B 183 5 5 HELIX 19 AC1 GLY B 196 ALA B 205 1 10 HELIX 20 AC2 THR B 217 ASN B 229 1 13 HELIX 21 AC3 ARG B 267 ALA B 275 1 9 HELIX 22 AC4 ASP B 299 ASN B 311 1 13 HELIX 23 AC5 PHE B 312 TYR B 314 5 3 HELIX 24 AC6 SER B 317 VAL B 321 5 5 HELIX 25 AC7 LEU B 323 ALA B 325 5 3 HELIX 26 AC8 LEU B 326 ARG B 336 1 11 HELIX 27 AC9 ASP B 344 LEU B 348 5 5 HELIX 28 AD1 LYS B 363 LEU B 367 5 5 SHEET 1 AA1 5 ILE A 235 PRO A 239 0 SHEET 2 AA1 5 LYS A 209 GLU A 214 1 N ALA A 212 O ILE A 238 SHEET 3 AA1 5 ILE A 187 VAL A 191 1 N ASP A 190 O TYR A 211 SHEET 4 AA1 5 VAL A 251 ILE A 255 1 O ILE A 255 N LEU A 189 SHEET 5 AA1 5 LEU A 279 PHE A 286 1 O LYS A 280 N VAL A 251 SHEET 1 AA2 4 VAL A 353 ASN A 358 0 SHEET 2 AA2 4 ILE A 289 PHE A 297 -1 N VAL A 292 O TYR A 355 SHEET 3 AA2 4 GLY A 382 ILE A 396 -1 O TRP A 390 N HIS A 293 SHEET 4 AA2 4 THR A 401 SER A 405 -1 O VAL A 402 N PHE A 395 SHEET 1 AA3 6 VAL A 353 ASN A 358 0 SHEET 2 AA3 6 ILE A 289 PHE A 297 -1 N VAL A 292 O TYR A 355 SHEET 3 AA3 6 GLY A 382 ILE A 396 -1 O TRP A 390 N HIS A 293 SHEET 4 AA3 6 GLN A 417 ALA A 428 -1 O LEU A 426 N VAL A 384 SHEET 5 AA3 6 VAL A 339 ASP A 341 -1 N VAL A 339 O ARG A 419 SHEET 6 AA3 6 PHE A 473 PHE A 474 1 O PHE A 473 N VAL A 340 SHEET 1 AA4 4 ARG A 369 HIS A 377 0 SHEET 2 AA4 4 THR A 433 ASN A 443 -1 O CYS A 438 N ILE A 372 SHEET 3 AA4 4 SER A 447 VAL A 456 -1 O SER A 451 N LEU A 439 SHEET 4 AA4 4 LYS A 462 ASP A 468 -1 O LEU A 467 N ILE A 450 SHEET 1 AA5 5 ILE B 235 PRO B 239 0 SHEET 2 AA5 5 LYS B 209 GLU B 214 1 N ILE B 210 O VAL B 236 SHEET 3 AA5 5 ILE B 187 VAL B 191 1 N VAL B 188 O TYR B 211 SHEET 4 AA5 5 VAL B 251 ILE B 255 1 O ILE B 255 N LEU B 189 SHEET 5 AA5 5 LEU B 279 PHE B 286 1 O LYS B 280 N VAL B 251 SHEET 1 AA6 4 VAL B 353 ASN B 358 0 SHEET 2 AA6 4 ILE B 289 PHE B 297 -1 N GLY B 290 O VAL B 357 SHEET 3 AA6 4 GLY B 382 ILE B 396 -1 O ALA B 388 N ALA B 295 SHEET 4 AA6 4 THR B 401 SER B 405 -1 O VAL B 402 N PHE B 395 SHEET 1 AA7 6 VAL B 353 ASN B 358 0 SHEET 2 AA7 6 ILE B 289 PHE B 297 -1 N GLY B 290 O VAL B 357 SHEET 3 AA7 6 GLY B 382 ILE B 396 -1 O ALA B 388 N ALA B 295 SHEET 4 AA7 6 GLN B 417 ALA B 428 -1 O PHE B 422 N HIS B 385 SHEET 5 AA7 6 VAL B 339 ASP B 341 -1 N VAL B 339 O ARG B 419 SHEET 6 AA7 6 PHE B 473 PHE B 474 1 O PHE B 473 N VAL B 340 SHEET 1 AA8 4 ARG B 369 HIS B 377 0 SHEET 2 AA8 4 THR B 433 ASN B 443 -1 O CYS B 438 N ILE B 372 SHEET 3 AA8 4 SER B 447 VAL B 456 -1 O SER B 451 N LEU B 439 SHEET 4 AA8 4 LYS B 462 ASP B 468 -1 O LEU B 467 N ILE B 450 CISPEP 1 PHE A 286 PRO A 287 0 6.67 CISPEP 2 PHE B 286 PRO B 287 0 7.31 CRYST1 74.269 98.197 206.795 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004836 0.00000