HEADER GENE REGULATION/DNA 15-MAR-22 7UBL TITLE TRANSCRIPTION ANTITERMINATION FACTOR QLAMBDA IN COMPLEX WITH Q-LAMBDA- TITLE 2 BINDING-ELEMENT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITERMINATION PROTEIN Q; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 62-207; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*AP*CP*CP*CP*AP*AP*TP*TP*TP*TP*AP*TP*TP*CP*AP*AP*TP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*CP*AP*TP*TP*GP*AP*AP*TP*AP*AP*AP*AP*TP*TP*GP*GP*GP*TP*G)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 2681611; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 9 ORGANISM_TAXID: 2681611; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 13 ORGANISM_TAXID: 2681611 KEYWDS RNA POLYMERASE, DNA BINDING, TRANSCRIPTION, Q-DEPENDENT KEYWDS 2 ANTITERMINATION, Q ANTITERMINATION FACTOR, GENE REGULATION-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.YIN,R.H.EBRIGHT REVDAT 1 28-SEP-22 7UBL 0 JRNL AUTH Z.YIN,J.G.BIRD,J.T.KAELBER,B.E.NICKELS,R.H.EBRIGHT JRNL TITL IN TRANSCRIPTION ANTITERMINATION BY Q LAMBDA , NUSA INDUCES JRNL TITL 2 REFOLDING OF Q LAMBDA TO FORM A NOZZLE THAT EXTENDS THE RNA JRNL TITL 3 POLYMERASE RNA-EXIT CHANNEL. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 78119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35951650 JRNL DOI 10.1073/PNAS.2205278119 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 23174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3520 - 6.2755 0.99 1638 153 0.1575 0.1730 REMARK 3 2 6.2755 - 4.9829 0.99 1628 161 0.1671 0.2060 REMARK 3 3 4.9829 - 4.3536 1.00 1635 167 0.1569 0.2089 REMARK 3 4 4.3536 - 3.9558 0.99 1643 154 0.1575 0.1772 REMARK 3 5 3.9558 - 3.6724 1.00 1634 158 0.1536 0.1763 REMARK 3 6 3.6724 - 3.4559 1.00 1634 160 0.1733 0.2000 REMARK 3 7 3.4559 - 3.2829 0.99 1626 161 0.1824 0.2170 REMARK 3 8 3.2829 - 3.1400 0.97 1586 158 0.1898 0.2721 REMARK 3 9 3.1400 - 3.0192 0.99 1641 161 0.2145 0.2770 REMARK 3 10 3.0192 - 2.9150 1.00 1594 154 0.2262 0.2418 REMARK 3 11 2.9150 - 2.8239 1.00 1679 167 0.2183 0.2652 REMARK 3 12 2.8239 - 2.7432 1.00 1593 155 0.2166 0.2722 REMARK 3 13 2.7432 - 2.6709 1.00 1658 166 0.2164 0.2673 REMARK 3 14 2.6709 - 2.6058 1.00 1628 159 0.2121 0.2287 REMARK 3 15 2.6058 - 2.5466 0.99 1661 161 0.2095 0.2588 REMARK 3 16 2.5466 - 2.4924 0.96 1529 153 0.2133 0.3023 REMARK 3 17 2.4924 - 2.4425 0.95 1608 154 0.2335 0.3037 REMARK 3 18 2.4425 - 2.3964 0.89 1434 140 0.2208 0.2601 REMARK 3 19 2.3964 - 2.3536 0.79 1285 124 0.2197 0.2665 REMARK 3 20 2.3536 - 2.3137 0.74 1248 116 0.2236 0.3039 REMARK 3 21 2.3137 - 2.2764 0.67 1092 106 0.2248 0.2657 REMARK 3 22 2.2764 - 2.2414 0.58 937 90 0.2639 0.3655 REMARK 3 23 2.2414 - 2.2084 0.55 902 86 0.2646 0.3171 REMARK 3 24 2.2084 - 2.1773 0.38 641 65 0.2600 0.3447 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 61:129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.950 111.556 28.563 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.1503 REMARK 3 T33: 0.1844 T12: 0.0250 REMARK 3 T13: 0.0186 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.5091 L22: 1.2563 REMARK 3 L33: 3.9940 L12: 0.2376 REMARK 3 L13: -1.1641 L23: 0.1419 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.0334 S13: -0.0444 REMARK 3 S21: 0.1204 S22: -0.1851 S23: 0.0840 REMARK 3 S31: -0.2385 S32: -0.0755 S33: 0.2641 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 130:157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.844 111.024 4.144 REMARK 3 T TENSOR REMARK 3 T11: 0.3229 T22: 0.3546 REMARK 3 T33: 0.2432 T12: -0.1061 REMARK 3 T13: 0.0605 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.2444 L22: 0.0902 REMARK 3 L33: 5.8577 L12: -0.1227 REMARK 3 L13: 1.1531 L23: -0.1788 REMARK 3 S TENSOR REMARK 3 S11: -0.1399 S12: 0.0631 S13: -0.0669 REMARK 3 S21: 0.0695 S22: -0.2337 S23: -0.1196 REMARK 3 S31: -0.1451 S32: 0.4384 S33: 0.2830 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 158:201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.588 105.116 29.936 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.1902 REMARK 3 T33: 0.2420 T12: -0.0124 REMARK 3 T13: 0.1415 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 4.1376 L22: 3.1340 REMARK 3 L33: 3.2819 L12: -1.6593 REMARK 3 L13: 0.8679 L23: 0.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.1451 S12: 0.1384 S13: -0.3255 REMARK 3 S21: -0.2185 S22: -0.2773 S23: -0.0160 REMARK 3 S31: 0.0545 S32: -0.1085 S33: 0.3221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.189 108.117 4.743 REMARK 3 T TENSOR REMARK 3 T11: 0.5848 T22: 0.4378 REMARK 3 T33: 0.3705 T12: -0.1585 REMARK 3 T13: 0.2465 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 3.4240 L22: 5.2141 REMARK 3 L33: 9.4913 L12: 1.2483 REMARK 3 L13: -0.4411 L23: -6.1897 REMARK 3 S TENSOR REMARK 3 S11: -0.3433 S12: -0.0313 S13: -0.5042 REMARK 3 S21: -0.1201 S22: -0.3798 S23: -0.2521 REMARK 3 S31: 1.1299 S32: 0.3962 S33: 0.4623 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.643 93.373 21.559 REMARK 3 T TENSOR REMARK 3 T11: 0.6977 T22: 0.2270 REMARK 3 T33: 0.5074 T12: 0.0579 REMARK 3 T13: 0.4648 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.2051 L22: 0.9786 REMARK 3 L33: 2.3301 L12: -0.2320 REMARK 3 L13: 0.9227 L23: -0.2803 REMARK 3 S TENSOR REMARK 3 S11: -0.4176 S12: 0.2721 S13: -0.5880 REMARK 3 S21: -0.4166 S22: -0.0454 S23: -0.3336 REMARK 3 S31: 0.4683 S32: 0.4223 S33: 0.1006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 16:19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.801 77.353 35.830 REMARK 3 T TENSOR REMARK 3 T11: 1.0815 T22: 0.6177 REMARK 3 T33: 0.9621 T12: -0.2382 REMARK 3 T13: 0.4942 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 5.6665 L22: 5.4763 REMARK 3 L33: 8.4028 L12: 3.4686 REMARK 3 L13: -3.2502 L23: -6.6723 REMARK 3 S TENSOR REMARK 3 S11: 0.3588 S12: -1.0787 S13: -0.2690 REMARK 3 S21: 0.4881 S22: -0.4913 S23: 0.1303 REMARK 3 S31: 0.2088 S32: 0.1969 S33: 0.2698 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.480 83.145 33.290 REMARK 3 T TENSOR REMARK 3 T11: 0.6990 T22: 0.2439 REMARK 3 T33: 0.8701 T12: -0.1145 REMARK 3 T13: 0.4010 T23: 0.1682 REMARK 3 L TENSOR REMARK 3 L11: 2.9608 L22: 6.0264 REMARK 3 L33: 4.5717 L12: 0.1767 REMARK 3 L13: -1.0210 L23: -3.3074 REMARK 3 S TENSOR REMARK 3 S11: -0.3450 S12: 0.1926 S13: -0.1704 REMARK 3 S21: -0.1214 S22: 0.2868 S23: 0.7697 REMARK 3 S31: 0.6879 S32: -0.4813 S33: -0.2280 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN C AND RESID 6:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.198 94.689 20.017 REMARK 3 T TENSOR REMARK 3 T11: 0.7055 T22: 0.3107 REMARK 3 T33: 0.6732 T12: 0.0570 REMARK 3 T13: 0.3883 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 0.1970 L22: 2.4542 REMARK 3 L33: 1.4516 L12: 0.3618 REMARK 3 L13: -0.0921 L23: -1.7608 REMARK 3 S TENSOR REMARK 3 S11: -0.3927 S12: -0.0557 S13: -0.5457 REMARK 3 S21: -0.4985 S22: -0.1263 S23: -0.2748 REMARK 3 S31: 0.7220 S32: 0.4800 S33: 0.3331 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN C AND RESID 16:19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.069 108.185 8.364 REMARK 3 T TENSOR REMARK 3 T11: 0.4836 T22: 0.6707 REMARK 3 T33: 0.7091 T12: 0.0119 REMARK 3 T13: 0.4709 T23: 0.3142 REMARK 3 L TENSOR REMARK 3 L11: 0.5263 L22: 0.5052 REMARK 3 L33: 0.1659 L12: 0.4995 REMARK 3 L13: -0.2901 L23: -0.2907 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: -0.2162 S13: -0.0812 REMARK 3 S21: -0.0168 S22: -0.0593 S23: -0.1141 REMARK 3 S31: -0.0464 S32: 0.3877 S33: 0.2649 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23174 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.177 REMARK 200 RESOLUTION RANGE LOW (A) : 46.352 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7, 1 M SODIUM CITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.77250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.55100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.55100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.38625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.55100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.55100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.15875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.55100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.55100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 12.38625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.55100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.55100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.15875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 202 REMARK 465 ASN A 203 REMARK 465 ALA A 204 REMARK 465 VAL A 205 REMARK 465 THR A 206 REMARK 465 ARG A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 17 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 180 -44.82 -131.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 118 SG REMARK 620 2 CYS A 121 SG 105.0 REMARK 620 3 CYS A 144 SG 113.3 112.3 REMARK 620 4 CYS A 147 SG 118.0 103.9 104.1 REMARK 620 N 1 2 3 DBREF 7UBL A 62 207 UNP P03047 REGQ_LAMBD 62 207 DBREF 7UBL B 1 19 PDB 7UBL 7UBL 1 19 DBREF 7UBL C 1 19 PDB 7UBL 7UBL 1 19 SEQADV 7UBL SER A 61 UNP P03047 EXPRESSION TAG SEQADV 7UBL LYS A 134 UNP P03047 GLU 134 ENGINEERED MUTATION SEQRES 1 A 147 SER ASP LYS GLN LYS ALA ILE ASN TYR LEU MET GLN PHE SEQRES 2 A 147 ALA HIS LYS VAL SER GLY LYS TYR ARG GLY VAL ALA LYS SEQRES 3 A 147 LEU GLU GLY ASN THR LYS ALA LYS VAL LEU GLN VAL LEU SEQRES 4 A 147 ALA THR PHE ALA TYR ALA ASP TYR CYS ARG SER ALA ALA SEQRES 5 A 147 THR PRO GLY ALA ARG CYS ARG ASP CYS HIS GLY THR GLY SEQRES 6 A 147 ARG ALA VAL ASP ILE ALA LYS THR LYS LEU TRP GLY ARG SEQRES 7 A 147 VAL VAL GLU LYS GLU CYS GLY ARG CYS LYS GLY VAL GLY SEQRES 8 A 147 TYR SER ARG MET PRO ALA SER ALA ALA TYR ARG ALA VAL SEQRES 9 A 147 THR MET LEU ILE PRO ASN LEU THR GLN PRO THR TRP SER SEQRES 10 A 147 ARG THR VAL LYS PRO LEU TYR ASP ALA LEU VAL VAL GLN SEQRES 11 A 147 CYS HIS LYS GLU GLU SER ILE ALA ASP ASN ILE LEU ASN SEQRES 12 A 147 ALA VAL THR ARG SEQRES 1 B 19 DC DA DC DC DC DA DA DT DT DT DT DA DT SEQRES 2 B 19 DT DC DA DA DT DG SEQRES 1 C 19 DC DA DT DT DG DA DA DT DA DA DA DA DT SEQRES 2 C 19 DT DG DG DG DT DG HET ZN A 301 1 HET EDO A 302 10 HET EDO A 303 10 HET EDO A 304 10 HET EDO A 305 10 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN ZN 2+ FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *140(H2 O) HELIX 1 AA1 SER A 61 SER A 78 1 18 HELIX 2 AA2 TYR A 81 LYS A 86 1 6 HELIX 3 AA3 GLU A 88 CYS A 108 1 21 HELIX 4 AA4 ASP A 129 GLY A 137 1 9 HELIX 5 AA5 PRO A 156 MET A 166 1 11 HELIX 6 AA6 THR A 172 VAL A 180 1 9 HELIX 7 AA7 VAL A 180 GLU A 194 1 15 SHEET 1 AA1 2 ARG A 126 VAL A 128 0 SHEET 2 AA1 2 GLU A 141 GLU A 143 -1 O LYS A 142 N ALA A 127 LINK SG CYS A 118 ZN ZN A 301 1555 1555 2.23 LINK SG CYS A 121 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 144 ZN ZN A 301 1555 1555 2.38 LINK SG CYS A 147 ZN ZN A 301 1555 1555 2.47 CRYST1 131.102 131.102 49.545 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020184 0.00000