HEADER DNA BINDING PROTEIN 16-MAR-22 7UCC TITLE TRANSCRIPTION FACTOR FOSB/JUND BZIP DOMAIN IN THE REDUCED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FOSB; COMPND 3 CHAIN: F; COMPND 4 SYNONYM: G0/G1 SWITCH REGULATORY PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION FACTOR JUN-D; COMPND 8 CHAIN: J; COMPND 9 FRAGMENT: UNP RESIDUES 266-332; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FOSB, G0S3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: D3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: JUND; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: D3 KEYWDS FOSB, JUND, REDOX SWITCH, REDOX SENSOR, TRANSCRIPTION FACTOR, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,M.C.MACHIUS,G.RUDENKO REVDAT 2 25-OCT-23 7UCC 1 REMARK REVDAT 1 25-JAN-23 7UCC 0 JRNL AUTH A.KUMAR,G.AGLYAMOVA,Y.Y.YIM,A.O.BAILEY,H.M.LYNCH,R.T.POWELL, JRNL AUTH 2 N.D.NGUYEN,Z.ROSENTHAL,W.N.ZHAO,Y.LI,J.CHEN,S.FAN,H.LEE, JRNL AUTH 3 W.K.RUSSELL,C.STEPHAN,A.J.ROBISON,S.J.HAGGARTY,E.J.NESTLER, JRNL AUTH 4 J.ZHOU,M.MACHIUS,G.RUDENKO JRNL TITL CHEMICALLY TARGETING THE REDOX SWITCH IN AP1 TRANSCRIPTION JRNL TITL 2 FACTOR DELTA FOSB. JRNL REF NUCLEIC ACIDS RES. V. 50 9548 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36039764 JRNL DOI 10.1093/NAR/GKAC710 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 72.5 REMARK 3 NUMBER OF REFLECTIONS : 11335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2300 - 3.0800 0.99 3824 201 0.1997 0.2604 REMARK 3 2 3.0800 - 2.4500 0.95 3510 184 0.2157 0.2914 REMARK 3 3 2.4500 - 2.1400 0.64 2335 123 0.2010 0.2470 REMARK 3 4 2.1400 - 1.9400 0.30 1101 57 0.2042 0.2788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'J' AND (RESID 265 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1493 -22.0860 -13.8265 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.1401 REMARK 3 T33: -0.0017 T12: -0.0180 REMARK 3 T13: -0.1504 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.2905 L22: 0.1603 REMARK 3 L33: 3.4887 L12: 0.1257 REMARK 3 L13: 0.9518 L23: 0.2473 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.0648 S13: -0.0762 REMARK 3 S21: 0.1886 S22: -0.0738 S23: -0.0153 REMARK 3 S31: 0.1021 S32: 0.0205 S33: -0.0546 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 155 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9723 -16.5521 -14.2495 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.1269 REMARK 3 T33: 0.0865 T12: -0.1152 REMARK 3 T13: -0.0541 T23: -0.1624 REMARK 3 L TENSOR REMARK 3 L11: 0.3062 L22: 0.4990 REMARK 3 L33: 1.7629 L12: 0.2018 REMARK 3 L13: 0.4880 L23: 0.6328 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0137 S13: 0.0439 REMARK 3 S21: 0.0128 S22: 0.0096 S23: 0.0307 REMARK 3 S31: 0.0328 S32: -0.0352 S33: 0.0519 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 2.3.15 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 2.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.1 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VPF, POLY-ALANINE REMARK 200 REMARK 200 REMARK: DIAMOND-SHAPED, SIZE 200-300 MICROMETERS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 7.0, 40% (V/V) REMARK 280 ETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.96950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.12200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.08500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.96950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.12200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.08500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.96950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.12200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.08500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.96950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.12200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL F 302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER F 152 REMARK 465 GLU F 153 REMARK 465 HIS F 218 REMARK 465 LYS F 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU F 154 CG CD OE1 OE2 REMARK 470 GLU F 155 CG CD OE1 OE2 REMARK 470 ARG F 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS J 270 CG CD CE NZ REMARK 470 ARG J 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS J 289 CG CD CE NZ DBREF 7UCC F 153 219 UNP P53539 FOSB_HUMAN 153 219 DBREF 7UCC J 266 332 UNP P17535 JUND_HUMAN 266 332 SEQADV 7UCC SER F 152 UNP P53539 EXPRESSION TAG SEQADV 7UCC SER J 265 UNP P17535 EXPRESSION TAG SEQRES 1 F 68 SER GLU GLU GLU GLU LYS ARG ARG VAL ARG ARG GLU ARG SEQRES 2 F 68 ASN LYS LEU ALA ALA ALA LYS CYS ARG ASN ARG ARG ARG SEQRES 3 F 68 GLU LEU THR ASP ARG LEU GLN ALA GLU THR ASP GLN LEU SEQRES 4 F 68 GLU GLU GLU LYS ALA GLU LEU GLU SER GLU ILE ALA GLU SEQRES 5 F 68 LEU GLN LYS GLU LYS GLU ARG LEU GLU PHE VAL LEU VAL SEQRES 6 F 68 ALA HIS LYS SEQRES 1 J 68 SER GLN GLU ARG ILE LYS ALA GLU ARG LYS ARG LEU ARG SEQRES 2 J 68 ASN ARG ILE ALA ALA SER LYS CYS ARG LYS ARG LYS LEU SEQRES 3 J 68 GLU ARG ILE SER ARG LEU GLU GLU LYS VAL LYS THR LEU SEQRES 4 J 68 LYS SER GLN ASN THR GLU LEU ALA SER THR ALA SER LEU SEQRES 5 J 68 LEU ARG GLU GLN VAL ALA GLN LEU LYS GLN LYS VAL LEU SEQRES 6 J 68 SER HIS VAL HET CL F 301 1 HET CL F 302 1 HET CL F 303 1 HET EOH J 401 9 HET NA J 402 1 HETNAM CL CHLORIDE ION HETNAM EOH ETHANOL HETNAM NA SODIUM ION FORMUL 3 CL 3(CL 1-) FORMUL 6 EOH C2 H6 O FORMUL 7 NA NA 1+ FORMUL 8 HOH *141(H2 O) HELIX 1 AA1 GLU F 155 ALA F 217 1 63 HELIX 2 AA2 GLN J 266 SER J 330 1 65 LINK OE1 GLU J 309 NA NA J 402 1555 1555 2.69 CRYST1 47.939 70.244 122.170 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008185 0.00000