HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-MAR-22 7UDQ TITLE CRYSTAL STRUCTURE OF COQ8A-CA157 INHIBITOR COMPLEX IN SPACE GROUP P1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATYPICAL KINASE COQ8A, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHAPERONE ACTIVITY OF BC1 COMPLEX-LIKE,CHAPERONE-ABC1-LIKE, COMPND 5 COENZYME Q PROTEIN 8A,AARF DOMAIN-CONTAINING PROTEIN KINASE 3; COMPND 6 EC: 2.7.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COQ8A, ADCK3, CABC1, PP265; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COQ BIOSYNTHESIS, KINASE-LIKE, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BINGMAN,N.MURRAY,R.W.SMITH,D.J.PAGLIARINI REVDAT 3 25-OCT-23 7UDQ 1 REMARK REVDAT 2 15-FEB-23 7UDQ 1 JRNL REVDAT 1 18-JAN-23 7UDQ 0 JRNL AUTH N.H.MURRAY,C.R.M.ASQUITH,Z.FANG,M.P.EAST,N.PTAK,R.W.SMITH, JRNL AUTH 2 J.D.VASTA,C.A.ZIMPRICH,C.R.CORONA,M.B.ROBERS,G.L.JOHNSON, JRNL AUTH 3 C.A.BINGMAN,D.J.PAGLIARINI JRNL TITL SMALL-MOLECULE INHIBITION OF THE ARCHETYPAL UBIB PROTEIN JRNL TITL 2 COQ8. JRNL REF NAT.CHEM.BIOL. V. 19 230 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36302899 JRNL DOI 10.1038/S41589-022-01168-3 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 58710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7200 - 4.9800 0.97 3123 145 0.1710 0.2251 REMARK 3 2 4.9800 - 3.9500 0.98 3145 148 0.1459 0.1910 REMARK 3 3 3.9500 - 3.4500 0.98 3129 153 0.1718 0.2093 REMARK 3 4 3.4500 - 3.1400 0.97 3135 142 0.2039 0.2534 REMARK 3 5 3.1400 - 2.9100 0.96 3113 129 0.2146 0.2629 REMARK 3 6 2.9100 - 2.7400 0.97 3122 117 0.2196 0.2580 REMARK 3 7 2.7400 - 2.6000 0.98 3192 120 0.2278 0.2673 REMARK 3 8 2.6000 - 2.4900 0.97 3125 128 0.2127 0.2849 REMARK 3 9 2.4900 - 2.3900 0.97 3112 149 0.2119 0.2756 REMARK 3 10 2.3900 - 2.3100 0.97 3167 130 0.2116 0.2461 REMARK 3 11 2.3100 - 2.2400 0.97 3127 147 0.2160 0.2951 REMARK 3 12 2.2400 - 2.1700 0.97 3089 141 0.2235 0.2677 REMARK 3 13 2.1700 - 2.1200 0.97 3133 124 0.2240 0.3089 REMARK 3 14 2.1200 - 2.0700 0.97 3143 130 0.2409 0.2792 REMARK 3 15 2.0700 - 2.0200 0.96 3115 134 0.2526 0.2798 REMARK 3 16 2.0200 - 1.9800 0.96 3132 138 0.2691 0.2889 REMARK 3 17 1.9800 - 1.9400 0.96 3044 145 0.2805 0.3432 REMARK 3 18 1.9400 - 1.9000 0.96 3101 143 0.3232 0.3250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9724 24.2499 63.9305 REMARK 3 T TENSOR REMARK 3 T11: 0.5796 T22: 0.7365 REMARK 3 T33: 0.4060 T12: -0.0243 REMARK 3 T13: 0.0882 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.8013 L22: 3.0756 REMARK 3 L33: 1.7840 L12: -2.5777 REMARK 3 L13: -0.1510 L23: 1.2608 REMARK 3 S TENSOR REMARK 3 S11: -0.4743 S12: -0.6648 S13: -0.3802 REMARK 3 S21: 0.9040 S22: 0.5251 S23: 0.2058 REMARK 3 S31: 0.3757 S32: 0.2002 S33: -0.1289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0324 30.9901 59.1738 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.3235 REMARK 3 T33: 0.2699 T12: -0.0717 REMARK 3 T13: 0.0106 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 4.9529 L22: 2.2432 REMARK 3 L33: 3.0766 L12: -1.9801 REMARK 3 L13: -1.1254 L23: 0.3554 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.0980 S13: -0.1321 REMARK 3 S21: -0.0950 S22: -0.1495 S23: -0.0876 REMARK 3 S31: -0.1356 S32: 0.1735 S33: 0.1294 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9017 27.0928 57.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.2617 T22: 0.4071 REMARK 3 T33: 0.2588 T12: 0.0565 REMARK 3 T13: -0.0244 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.7444 L22: 6.5773 REMARK 3 L33: 0.6982 L12: 3.2504 REMARK 3 L13: 0.1413 L23: 0.7679 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.2122 S13: 0.0748 REMARK 3 S21: 0.0839 S22: -0.0473 S23: 0.2120 REMARK 3 S31: -0.1198 S32: -0.0865 S33: 0.0637 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 506 THROUGH 646 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3295 9.5795 45.2338 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.3725 REMARK 3 T33: 0.3091 T12: 0.0258 REMARK 3 T13: 0.0048 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.8522 L22: 3.1558 REMARK 3 L33: 4.5259 L12: -0.5186 REMARK 3 L13: -0.3478 L23: 1.1744 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: 0.0960 S13: -0.0722 REMARK 3 S21: -0.2071 S22: 0.0769 S23: -0.0807 REMARK 3 S31: 0.1976 S32: 0.2170 S33: 0.0244 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 258 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6985 55.9147 11.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.4093 T22: 0.3583 REMARK 3 T33: 0.3425 T12: -0.0267 REMARK 3 T13: 0.0068 T23: -0.0632 REMARK 3 L TENSOR REMARK 3 L11: 3.8656 L22: 3.4071 REMARK 3 L33: 2.5963 L12: 2.8342 REMARK 3 L13: -2.0046 L23: -2.7723 REMARK 3 S TENSOR REMARK 3 S11: -0.2501 S12: 0.1394 S13: -0.0571 REMARK 3 S21: -0.3386 S22: 0.1836 S23: 0.1968 REMARK 3 S31: 0.1509 S32: -0.3367 S33: 0.0269 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 382 THROUGH 644 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3134 43.3003 24.9575 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.3785 REMARK 3 T33: 0.2779 T12: -0.0435 REMARK 3 T13: 0.0031 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.7912 L22: 2.1515 REMARK 3 L33: 1.7500 L12: -0.1299 REMARK 3 L13: -0.0348 L23: -1.2212 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.0908 S13: -0.0097 REMARK 3 S21: 0.0415 S22: -0.0178 S23: -0.0265 REMARK 3 S31: -0.0047 S32: 0.0388 S33: 0.0974 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND RESID 701 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8300 32.2892 62.6925 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.3612 REMARK 3 T33: 0.4300 T12: -0.0372 REMARK 3 T13: -0.0474 T23: -0.0783 REMARK 3 L TENSOR REMARK 3 L11: 6.1763 L22: 8.6418 REMARK 3 L33: 3.3788 L12: 0.0124 REMARK 3 L13: 1.5377 L23: -3.8116 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.2617 S13: -0.4541 REMARK 3 S21: 0.1792 S22: -0.1526 S23: -0.1885 REMARK 3 S31: -0.2665 S32: 0.2267 S33: 0.1103 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND RESID 701 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9167 58.6105 11.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.2998 T22: 0.3374 REMARK 3 T33: 0.4555 T12: -0.0330 REMARK 3 T13: -0.0628 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 5.0027 L22: 4.3771 REMARK 3 L33: 2.4052 L12: 0.5015 REMARK 3 L13: -2.5377 L23: 0.8793 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.2052 S13: 0.0599 REMARK 3 S21: 0.0152 S22: 0.0411 S23: -0.1155 REMARK 3 S31: -0.0253 S32: 0.1730 S33: -0.0579 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000263881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033149 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5 (20210224), REMARK 200 AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58799 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.601 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.72 REMARK 200 R MERGE FOR SHELL (I) : 1.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 5I35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN IN A MRC SD2 PLATE REMARK 280 SET BY A STP LABTECH MOSQUITO. PROTEIN AT 17.89 MG/ML (390 UM) REMARK 280 WAS INCUBATED WITH 500 UM CA157 FOR 30 MIN AT AMBIENT REMARK 280 TEMPERATURE PRIOR TO SETUP. THE DROP PRODUCING THIS DATA SET WAS REMARK 280 200 NL PROTEIN-CA157 SOLUTION WAS MIXED WITH 300 NL OF 0.6 M REMARK 280 SODIUM SUCCINATE, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ALA A 258 REMARK 465 ASN A 259 REMARK 465 ALA A 260 REMARK 465 ILE A 283 REMARK 465 GLN A 284 REMARK 465 ASP A 285 REMARK 465 ASP A 286 REMARK 465 ALA A 287 REMARK 465 PHE A 288 REMARK 465 ILE A 289 REMARK 465 GLU A 387 REMARK 465 GLY A 388 REMARK 465 LEU A 389 REMARK 465 PHE A 390 REMARK 465 MET A 594 REMARK 465 LEU A 595 REMARK 465 ARG A 596 REMARK 465 HIS A 597 REMARK 465 ARG A 598 REMARK 465 LEU A 599 REMARK 465 GLN A 647 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 GLU B 257 REMARK 465 ASP B 286 REMARK 465 ALA B 287 REMARK 465 PHE B 288 REMARK 465 ILE B 289 REMARK 465 PRO B 386 REMARK 465 GLU B 387 REMARK 465 GLY B 388 REMARK 465 LEU B 389 REMARK 465 PHE B 390 REMARK 465 ALA B 645 REMARK 465 GLN B 646 REMARK 465 GLN B 647 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 340 OE1 GLU A 405 2.03 REMARK 500 OD2 ASP B 319 OG SER B 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 406 CB CYS B 406 SG -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 607 0.96 -150.10 REMARK 500 SER B 282 74.30 53.00 REMARK 500 ALA B 304 108.44 -179.21 REMARK 500 ASP B 507 34.08 -92.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 340 OG REMARK 620 2 GLU A 405 OE1 52.8 REMARK 620 3 HOH A 814 O 145.2 115.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 416 O REMARK 620 2 ASP A 420 OD1 92.1 REMARK 620 3 ASP A 420 OD2 72.9 47.0 REMARK 620 4 HOH A 924 O 116.6 149.1 149.3 REMARK 620 N 1 2 3 DBREF 7UDQ A 256 647 UNP Q8NI60 COQ8A_HUMAN 256 647 DBREF 7UDQ B 256 647 UNP Q8NI60 COQ8A_HUMAN 256 647 SEQADV 7UDQ SER A 255 UNP Q8NI60 EXPRESSION TAG SEQADV 7UDQ SER B 255 UNP Q8NI60 EXPRESSION TAG SEQRES 1 A 393 SER SER GLU ALA ASN ALA GLU ARG ILE VAL ARG THR LEU SEQRES 2 A 393 CYS LYS VAL ARG GLY ALA ALA LEU LYS LEU GLY GLN MET SEQRES 3 A 393 LEU SER ILE GLN ASP ASP ALA PHE ILE ASN PRO HIS LEU SEQRES 4 A 393 ALA LYS ILE PHE GLU ARG VAL ARG GLN SER ALA ASP PHE SEQRES 5 A 393 MET PRO LEU LYS GLN MET MET LYS THR LEU ASN ASN ASP SEQRES 6 A 393 LEU GLY PRO ASN TRP ARG ASP LYS LEU GLU TYR PHE GLU SEQRES 7 A 393 GLU ARG PRO PHE ALA ALA ALA SER ILE GLY GLN VAL HIS SEQRES 8 A 393 LEU ALA ARG MET LYS GLY GLY ARG GLU VAL ALA MET LYS SEQRES 9 A 393 ILE GLN TYR PRO GLY VAL ALA GLN SER ILE ASN SER ASP SEQRES 10 A 393 VAL ASN ASN LEU MET ALA VAL LEU ASN MET SER ASN MET SEQRES 11 A 393 LEU PRO GLU GLY LEU PHE PRO GLU HIS LEU ILE ASP VAL SEQRES 12 A 393 LEU ARG ARG GLU LEU ALA LEU GLU CYS ASP TYR GLN ARG SEQRES 13 A 393 GLU ALA ALA CYS ALA ARG LYS PHE ARG ASP LEU LEU LYS SEQRES 14 A 393 GLY HIS PRO PHE PHE TYR VAL PRO GLU ILE VAL ASP GLU SEQRES 15 A 393 LEU CYS SER PRO HIS VAL LEU THR THR GLU LEU VAL SER SEQRES 16 A 393 GLY PHE PRO LEU ASP GLN ALA GLU GLY LEU SER GLN GLU SEQRES 17 A 393 ILE ARG ASN GLU ILE CYS TYR ASN ILE LEU VAL LEU CYS SEQRES 18 A 393 LEU ARG GLU LEU PHE GLU PHE HIS PHE MET GLN THR ASP SEQRES 19 A 393 PRO ASN TRP SER ASN PHE PHE TYR ASP PRO GLN GLN HIS SEQRES 20 A 393 LYS VAL ALA LEU LEU ASP PHE GLY ALA THR ARG GLU TYR SEQRES 21 A 393 ASP ARG SER PHE THR ASP LEU TYR ILE GLN ILE ILE ARG SEQRES 22 A 393 ALA ALA ALA ASP ARG ASP ARG GLU THR VAL ARG ALA LYS SEQRES 23 A 393 SER ILE GLU MET LYS PHE LEU THR GLY TYR GLU VAL LYS SEQRES 24 A 393 VAL MET GLU ASP ALA HIS LEU ASP ALA ILE LEU ILE LEU SEQRES 25 A 393 GLY GLU ALA PHE ALA SER ASP GLU PRO PHE ASP PHE GLY SEQRES 26 A 393 THR GLN SER THR THR GLU LYS ILE HIS ASN LEU ILE PRO SEQRES 27 A 393 VAL MET LEU ARG HIS ARG LEU VAL PRO PRO PRO GLU GLU SEQRES 28 A 393 THR TYR SER LEU HIS ARG LYS MET GLY GLY SER PHE LEU SEQRES 29 A 393 ILE CYS SER LYS LEU LYS ALA ARG PHE PRO CYS LYS ALA SEQRES 30 A 393 MET PHE GLU GLU ALA TYR SER ASN TYR CYS LYS ARG GLN SEQRES 31 A 393 ALA GLN GLN SEQRES 1 B 393 SER SER GLU ALA ASN ALA GLU ARG ILE VAL ARG THR LEU SEQRES 2 B 393 CYS LYS VAL ARG GLY ALA ALA LEU LYS LEU GLY GLN MET SEQRES 3 B 393 LEU SER ILE GLN ASP ASP ALA PHE ILE ASN PRO HIS LEU SEQRES 4 B 393 ALA LYS ILE PHE GLU ARG VAL ARG GLN SER ALA ASP PHE SEQRES 5 B 393 MET PRO LEU LYS GLN MET MET LYS THR LEU ASN ASN ASP SEQRES 6 B 393 LEU GLY PRO ASN TRP ARG ASP LYS LEU GLU TYR PHE GLU SEQRES 7 B 393 GLU ARG PRO PHE ALA ALA ALA SER ILE GLY GLN VAL HIS SEQRES 8 B 393 LEU ALA ARG MET LYS GLY GLY ARG GLU VAL ALA MET LYS SEQRES 9 B 393 ILE GLN TYR PRO GLY VAL ALA GLN SER ILE ASN SER ASP SEQRES 10 B 393 VAL ASN ASN LEU MET ALA VAL LEU ASN MET SER ASN MET SEQRES 11 B 393 LEU PRO GLU GLY LEU PHE PRO GLU HIS LEU ILE ASP VAL SEQRES 12 B 393 LEU ARG ARG GLU LEU ALA LEU GLU CYS ASP TYR GLN ARG SEQRES 13 B 393 GLU ALA ALA CYS ALA ARG LYS PHE ARG ASP LEU LEU LYS SEQRES 14 B 393 GLY HIS PRO PHE PHE TYR VAL PRO GLU ILE VAL ASP GLU SEQRES 15 B 393 LEU CYS SER PRO HIS VAL LEU THR THR GLU LEU VAL SER SEQRES 16 B 393 GLY PHE PRO LEU ASP GLN ALA GLU GLY LEU SER GLN GLU SEQRES 17 B 393 ILE ARG ASN GLU ILE CYS TYR ASN ILE LEU VAL LEU CYS SEQRES 18 B 393 LEU ARG GLU LEU PHE GLU PHE HIS PHE MET GLN THR ASP SEQRES 19 B 393 PRO ASN TRP SER ASN PHE PHE TYR ASP PRO GLN GLN HIS SEQRES 20 B 393 LYS VAL ALA LEU LEU ASP PHE GLY ALA THR ARG GLU TYR SEQRES 21 B 393 ASP ARG SER PHE THR ASP LEU TYR ILE GLN ILE ILE ARG SEQRES 22 B 393 ALA ALA ALA ASP ARG ASP ARG GLU THR VAL ARG ALA LYS SEQRES 23 B 393 SER ILE GLU MET LYS PHE LEU THR GLY TYR GLU VAL LYS SEQRES 24 B 393 VAL MET GLU ASP ALA HIS LEU ASP ALA ILE LEU ILE LEU SEQRES 25 B 393 GLY GLU ALA PHE ALA SER ASP GLU PRO PHE ASP PHE GLY SEQRES 26 B 393 THR GLN SER THR THR GLU LYS ILE HIS ASN LEU ILE PRO SEQRES 27 B 393 VAL MET LEU ARG HIS ARG LEU VAL PRO PRO PRO GLU GLU SEQRES 28 B 393 THR TYR SER LEU HIS ARG LYS MET GLY GLY SER PHE LEU SEQRES 29 B 393 ILE CYS SER LYS LEU LYS ALA ARG PHE PRO CYS LYS ALA SEQRES 30 B 393 MET PHE GLU GLU ALA TYR SER ASN TYR CYS LYS ARG GLN SEQRES 31 B 393 ALA GLN GLN HET MVS A 701 42 HET NA A 702 1 HET NA A 703 1 HET MVS B 701 42 HETNAM MVS 4-[(3,4,5-TRIMETHOXYPHENYL)AMINO]QUINOLINE-7- HETNAM 2 MVS CARBONITRILE HETNAM NA SODIUM ION FORMUL 3 MVS 2(C19 H17 N3 O3) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *266(H2 O) HELIX 1 AA1 ARG A 262 LYS A 269 1 8 HELIX 2 AA2 VAL A 270 SER A 282 1 13 HELIX 3 AA3 PRO A 291 GLN A 302 1 12 HELIX 4 AA4 PRO A 308 GLY A 321 1 14 HELIX 5 AA5 ASN A 323 ASP A 326 5 4 HELIX 6 AA6 GLY A 363 GLN A 366 5 4 HELIX 7 AA7 SER A 367 SER A 382 1 16 HELIX 8 AA8 GLU A 392 GLU A 405 1 14 HELIX 9 AA9 ASP A 407 LEU A 422 1 16 HELIX 10 AB1 VAL A 434 CYS A 438 5 5 HELIX 11 AB2 ASP A 454 ALA A 456 5 3 HELIX 12 AB3 SER A 460 GLU A 481 1 22 HELIX 13 AB4 ASN A 490 SER A 492 5 3 HELIX 14 AB5 ASP A 515 ASP A 531 1 17 HELIX 15 AB6 ASP A 533 MET A 544 1 12 HELIX 16 AB7 VAL A 552 ALA A 571 1 20 HELIX 17 AB8 PHE A 578 SER A 582 1 5 HELIX 18 AB9 THR A 583 HIS A 588 1 6 HELIX 19 AC1 ASN A 589 ILE A 591 5 3 HELIX 20 AC2 PRO A 603 THR A 606 5 4 HELIX 21 AC3 TYR A 607 LEU A 623 1 17 HELIX 22 AC4 CYS A 629 ALA A 645 1 17 HELIX 23 AC5 ASN B 259 CYS B 268 1 10 HELIX 24 AC6 VAL B 270 SER B 282 1 13 HELIX 25 AC7 PRO B 291 SER B 303 1 13 HELIX 26 AC8 PRO B 308 GLY B 321 1 14 HELIX 27 AC9 ASN B 323 ASP B 326 5 4 HELIX 28 AD1 VAL B 364 GLN B 366 5 3 HELIX 29 AD2 SER B 367 SER B 382 1 16 HELIX 30 AD3 GLU B 392 CYS B 406 1 15 HELIX 31 AD4 ASP B 407 LEU B 422 1 16 HELIX 32 AD5 VAL B 434 CYS B 438 5 5 HELIX 33 AD6 ASP B 454 ALA B 456 5 3 HELIX 34 AD7 SER B 460 GLU B 481 1 22 HELIX 35 AD8 ASN B 490 SER B 492 5 3 HELIX 36 AD9 ASP B 515 ASP B 531 1 17 HELIX 37 AE1 ASP B 533 MET B 544 1 12 HELIX 38 AE2 VAL B 552 SER B 572 1 21 HELIX 39 AE3 THR B 580 ASN B 589 1 10 HELIX 40 AE4 ILE B 591 ARG B 596 1 6 HELIX 41 AE5 TYR B 607 LEU B 623 1 17 HELIX 42 AE6 CYS B 629 LYS B 642 1 14 SHEET 1 AA1 3 LEU A 328 PHE A 331 0 SHEET 2 AA1 3 GLY A 342 MET A 349 -1 O ARG A 348 N GLU A 329 SHEET 3 AA1 3 ALA A 337 ALA A 338 -1 N ALA A 337 O VAL A 344 SHEET 1 AA2 4 LEU A 328 PHE A 331 0 SHEET 2 AA2 4 GLY A 342 MET A 349 -1 O ARG A 348 N GLU A 329 SHEET 3 AA2 4 GLU A 354 GLN A 360 -1 O MET A 357 N HIS A 345 SHEET 4 AA2 4 VAL A 442 GLU A 446 -1 O LEU A 443 N LYS A 358 SHEET 1 AA3 4 PHE A 428 TYR A 429 0 SHEET 2 AA3 4 LYS A 502 LEU A 505 1 O LEU A 505 N TYR A 429 SHEET 3 AA3 4 PHE A 494 ASP A 497 -1 N ASP A 497 O LYS A 502 SHEET 4 AA3 4 PHE A 451 PRO A 452 -1 N PHE A 451 O TYR A 496 SHEET 1 AA4 2 PHE A 484 GLN A 486 0 SHEET 2 AA4 2 THR A 511 GLU A 513 -1 O ARG A 512 N MET A 485 SHEET 1 AA5 2 PHE A 576 ASP A 577 0 SHEET 2 AA5 2 ARG A 626 PHE A 627 -1 O PHE A 627 N PHE A 576 SHEET 1 AA6 3 LEU B 328 PHE B 331 0 SHEET 2 AA6 3 GLY B 342 MET B 349 -1 O ARG B 348 N TYR B 330 SHEET 3 AA6 3 ALA B 337 ALA B 338 -1 N ALA B 337 O VAL B 344 SHEET 1 AA7 4 LEU B 328 PHE B 331 0 SHEET 2 AA7 4 GLY B 342 MET B 349 -1 O ARG B 348 N TYR B 330 SHEET 3 AA7 4 GLU B 354 GLN B 360 -1 O MET B 357 N HIS B 345 SHEET 4 AA7 4 VAL B 442 GLU B 446 -1 O LEU B 443 N LYS B 358 SHEET 1 AA8 4 PHE B 428 TYR B 429 0 SHEET 2 AA8 4 LYS B 502 LEU B 505 1 O LEU B 505 N TYR B 429 SHEET 3 AA8 4 PHE B 494 ASP B 497 -1 N PHE B 495 O ALA B 504 SHEET 4 AA8 4 PHE B 451 PRO B 452 -1 N PHE B 451 O TYR B 496 SHEET 1 AA9 2 PHE B 484 GLN B 486 0 SHEET 2 AA9 2 THR B 511 GLU B 513 -1 O ARG B 512 N MET B 485 SHEET 1 AB1 2 PHE B 576 ASP B 577 0 SHEET 2 AB1 2 ARG B 626 PHE B 627 -1 O PHE B 627 N PHE B 576 LINK OG SER A 340 NA NA A 702 1555 1555 2.34 LINK OE1 GLU A 405 NA NA A 702 1555 1555 2.22 LINK O ARG A 416 NA NA A 703 1555 1555 2.84 LINK OD1 ASP A 420 NA NA A 703 1555 1555 2.24 LINK OD2 ASP A 420 NA NA A 703 1555 1555 3.05 LINK NA NA A 702 O HOH A 814 1555 1555 2.65 LINK NA NA A 703 O HOH A 924 1555 1555 2.35 CRYST1 48.273 54.859 80.012 109.79 94.62 92.11 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020716 0.000763 0.002061 0.00000 SCALE2 0.000000 0.018241 0.006658 0.00000 SCALE3 0.000000 0.000000 0.013348 0.00000