data_7UDV # _entry.id 7UDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UDV pdb_00007udv 10.2210/pdb7udv/pdb WWPDB D_1000263939 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7UDV _pdbx_database_status.recvd_initial_deposition_date 2022-03-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kratochvil, H.T.' 1 0000-0001-8039-6823 'Thomaston, J.L.' 2 ? 'Liu, L.' 3 ? 'DeGrado, W.F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1755-4349 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 1012 _citation.page_last 1021 _citation.title 'Transient water wires mediate selective proton transport in designed channel proteins.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41557-023-01210-4 _citation.pdbx_database_id_PubMed 37308712 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kratochvil, H.T.' 1 ? primary 'Watkins, L.C.' 2 ? primary 'Mravic, M.' 3 ? primary 'Thomaston, J.L.' 4 ? primary 'Nicoludis, J.M.' 5 ? primary 'Somberg, N.H.' 6 ? primary 'Liu, L.' 7 ? primary 'Hong, M.' 8 ? primary 'Voth, G.A.' 9 ? primary 'DeGrado, W.F.' 10 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7UDV _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.530 _cell.length_a_esd ? _cell.length_b 55.360 _cell.length_b_esd ? _cell.length_c 82.710 _cell.length_c_esd ? _cell.volume 240525.703 _cell.volume_esd ? _cell.Z_PDB 40 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'De novo designed proton channel LLQL' 3045.830 10 ? ? ? ? 2 water nat water 18.015 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DSLKWIVFLLFLIVLLQLAIVFLLRG _entity_poly.pdbx_seq_one_letter_code_can DSLKWIVFLLFLIVLLQLAIVFLLRG _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 LEU n 1 4 LYS n 1 5 TRP n 1 6 ILE n 1 7 VAL n 1 8 PHE n 1 9 LEU n 1 10 LEU n 1 11 PHE n 1 12 LEU n 1 13 ILE n 1 14 VAL n 1 15 LEU n 1 16 LEU n 1 17 GLN n 1 18 LEU n 1 19 ALA n 1 20 ILE n 1 21 VAL n 1 22 PHE n 1 23 LEU n 1 24 LEU n 1 25 ARG n 1 26 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 26 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7UDV _struct_ref.pdbx_db_accession 7UDV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7UDV A 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 2 1 7UDV B 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 3 1 7UDV C 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 4 1 7UDV D 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 5 1 7UDV E 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 6 1 7UDV F 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 7 1 7UDV G 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 8 1 7UDV H 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 9 1 7UDV I 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 10 1 7UDV J 1 ? 26 ? 7UDV 1 ? 26 ? 1 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UDV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M magnesium chloride, 0.1 M potassium chloride, 0.03 M sodium citrate, pH 4, 33% v/v PEG400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03318 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.03318 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 40.44 _reflns.entry_id 7UDV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 46.01 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8089 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 91.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.3 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.400 _reflns_shell.d_res_low 2.465 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 405 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.826 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.591 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 52.89 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7UDV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 46.01 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8048 _refine.ls_number_reflns_R_free 428 _refine.ls_number_reflns_R_work 7620 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 81.32 _refine.ls_percent_reflns_R_free 5.32 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2474 _refine.ls_R_factor_R_free 0.2676 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2462 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 6MCT' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.1145 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2394 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 46.01 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2039 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2035 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0027 ? 2073 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.4980 ? 2827 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0345 ? 397 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0022 ? 299 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.6408 ? 675 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.40 2.75 . . 109 1971 64.38 . . . 0.3176 . 0.2546 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.75 3.46 . . 134 2594 83.71 . . . 0.2782 . 0.2578 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.46 46.01 . . 185 3055 95.13 . . . 0.2557 . 0.2399 . . . . . . . . . . . # _struct.entry_id 7UDV _struct.title 'Designed pentameric proton channel LLQL' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UDV _struct_keywords.text 'Proton transport, de novo designed, pentameric, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 2 ? L N N 2 ? M N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 1 ? LEU A 24 ? ASP A 1 LEU A 24 1 ? 24 HELX_P HELX_P2 AA2 SER B 2 ? ARG B 25 ? SER B 2 ARG B 25 1 ? 24 HELX_P HELX_P3 AA3 SER C 2 ? ARG C 25 ? SER C 2 ARG C 25 1 ? 24 HELX_P HELX_P4 AA4 SER D 2 ? ARG D 25 ? SER D 2 ARG D 25 1 ? 24 HELX_P HELX_P5 AA5 LEU E 3 ? GLY E 26 ? LEU E 3 GLY E 26 1 ? 24 HELX_P HELX_P6 AA6 SER F 2 ? ARG F 25 ? SER F 2 ARG F 25 1 ? 24 HELX_P HELX_P7 AA7 LEU G 3 ? GLY G 26 ? LEU G 3 GLY G 26 1 ? 24 HELX_P HELX_P8 AA8 SER H 2 ? ARG H 25 ? SER H 2 ARG H 25 1 ? 24 HELX_P HELX_P9 AA9 SER I 2 ? ARG I 25 ? SER I 2 ARG I 25 1 ? 24 HELX_P HELX_P10 AB1 SER J 2 ? GLY J 26 ? SER J 2 GLY J 26 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7UDV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019037 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018064 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012090 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ARG 25 25 ? ? ? A . n A 1 26 GLY 26 26 ? ? ? A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 TRP 5 5 5 TRP TRP B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 PHE 11 11 11 PHE PHE B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 GLY 26 26 ? ? ? B . n C 1 1 ASP 1 1 1 ASP ASP C . n C 1 2 SER 2 2 2 SER SER C . n C 1 3 LEU 3 3 3 LEU LEU C . n C 1 4 LYS 4 4 4 LYS LYS C . n C 1 5 TRP 5 5 5 TRP TRP C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 PHE 8 8 8 PHE PHE C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 PHE 11 11 11 PHE PHE C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 ILE 13 13 13 ILE ILE C . n C 1 14 VAL 14 14 14 VAL VAL C . n C 1 15 LEU 15 15 15 LEU LEU C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 GLN 17 17 17 GLN GLN C . n C 1 18 LEU 18 18 18 LEU LEU C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 ILE 20 20 20 ILE ILE C . n C 1 21 VAL 21 21 21 VAL VAL C . n C 1 22 PHE 22 22 22 PHE PHE C . n C 1 23 LEU 23 23 23 LEU LEU C . n C 1 24 LEU 24 24 24 LEU LEU C . n C 1 25 ARG 25 25 25 ARG ARG C . n C 1 26 GLY 26 26 ? ? ? C . n D 1 1 ASP 1 1 1 ASP ASP D . n D 1 2 SER 2 2 2 SER SER D . n D 1 3 LEU 3 3 3 LEU LEU D . n D 1 4 LYS 4 4 4 LYS LYS D . n D 1 5 TRP 5 5 5 TRP TRP D . n D 1 6 ILE 6 6 6 ILE ILE D . n D 1 7 VAL 7 7 7 VAL VAL D . n D 1 8 PHE 8 8 8 PHE PHE D . n D 1 9 LEU 9 9 9 LEU LEU D . n D 1 10 LEU 10 10 10 LEU LEU D . n D 1 11 PHE 11 11 11 PHE PHE D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 ILE 13 13 13 ILE ILE D . n D 1 14 VAL 14 14 14 VAL VAL D . n D 1 15 LEU 15 15 15 LEU LEU D . n D 1 16 LEU 16 16 16 LEU LEU D . n D 1 17 GLN 17 17 17 GLN GLN D . n D 1 18 LEU 18 18 18 LEU LEU D . n D 1 19 ALA 19 19 19 ALA ALA D . n D 1 20 ILE 20 20 20 ILE ILE D . n D 1 21 VAL 21 21 21 VAL VAL D . n D 1 22 PHE 22 22 22 PHE PHE D . n D 1 23 LEU 23 23 23 LEU LEU D . n D 1 24 LEU 24 24 24 LEU LEU D . n D 1 25 ARG 25 25 25 ARG ARG D . n D 1 26 GLY 26 26 ? ? ? D . n E 1 1 ASP 1 1 ? ? ? E . n E 1 2 SER 2 2 2 SER SER E . n E 1 3 LEU 3 3 3 LEU LEU E . n E 1 4 LYS 4 4 4 LYS LYS E . n E 1 5 TRP 5 5 5 TRP TRP E . n E 1 6 ILE 6 6 6 ILE ILE E . n E 1 7 VAL 7 7 7 VAL VAL E . n E 1 8 PHE 8 8 8 PHE PHE E . n E 1 9 LEU 9 9 9 LEU LEU E . n E 1 10 LEU 10 10 10 LEU LEU E . n E 1 11 PHE 11 11 11 PHE PHE E . n E 1 12 LEU 12 12 12 LEU LEU E . n E 1 13 ILE 13 13 13 ILE ILE E . n E 1 14 VAL 14 14 14 VAL VAL E . n E 1 15 LEU 15 15 15 LEU LEU E . n E 1 16 LEU 16 16 16 LEU LEU E . n E 1 17 GLN 17 17 17 GLN GLN E . n E 1 18 LEU 18 18 18 LEU LEU E . n E 1 19 ALA 19 19 19 ALA ALA E . n E 1 20 ILE 20 20 20 ILE ILE E . n E 1 21 VAL 21 21 21 VAL VAL E . n E 1 22 PHE 22 22 22 PHE PHE E . n E 1 23 LEU 23 23 23 LEU LEU E . n E 1 24 LEU 24 24 24 LEU LEU E . n E 1 25 ARG 25 25 25 ARG ARG E . n E 1 26 GLY 26 26 26 GLY GLY E . n F 1 1 ASP 1 1 1 ASP ASP F . n F 1 2 SER 2 2 2 SER SER F . n F 1 3 LEU 3 3 3 LEU LEU F . n F 1 4 LYS 4 4 4 LYS LYS F . n F 1 5 TRP 5 5 5 TRP TRP F . n F 1 6 ILE 6 6 6 ILE ILE F . n F 1 7 VAL 7 7 7 VAL VAL F . n F 1 8 PHE 8 8 8 PHE PHE F . n F 1 9 LEU 9 9 9 LEU LEU F . n F 1 10 LEU 10 10 10 LEU LEU F . n F 1 11 PHE 11 11 11 PHE PHE F . n F 1 12 LEU 12 12 12 LEU LEU F . n F 1 13 ILE 13 13 13 ILE ILE F . n F 1 14 VAL 14 14 14 VAL VAL F . n F 1 15 LEU 15 15 15 LEU LEU F . n F 1 16 LEU 16 16 16 LEU LEU F . n F 1 17 GLN 17 17 17 GLN GLN F . n F 1 18 LEU 18 18 18 LEU LEU F . n F 1 19 ALA 19 19 19 ALA ALA F . n F 1 20 ILE 20 20 20 ILE ILE F . n F 1 21 VAL 21 21 21 VAL VAL F . n F 1 22 PHE 22 22 22 PHE PHE F . n F 1 23 LEU 23 23 23 LEU LEU F . n F 1 24 LEU 24 24 24 LEU LEU F . n F 1 25 ARG 25 25 25 ARG ARG F . n F 1 26 GLY 26 26 ? ? ? F . n G 1 1 ASP 1 1 ? ? ? G . n G 1 2 SER 2 2 2 SER SER G . n G 1 3 LEU 3 3 3 LEU LEU G . n G 1 4 LYS 4 4 4 LYS LYS G . n G 1 5 TRP 5 5 5 TRP TRP G . n G 1 6 ILE 6 6 6 ILE ILE G . n G 1 7 VAL 7 7 7 VAL VAL G . n G 1 8 PHE 8 8 8 PHE PHE G . n G 1 9 LEU 9 9 9 LEU LEU G . n G 1 10 LEU 10 10 10 LEU LEU G . n G 1 11 PHE 11 11 11 PHE PHE G . n G 1 12 LEU 12 12 12 LEU LEU G . n G 1 13 ILE 13 13 13 ILE ILE G . n G 1 14 VAL 14 14 14 VAL VAL G . n G 1 15 LEU 15 15 15 LEU LEU G . n G 1 16 LEU 16 16 16 LEU LEU G . n G 1 17 GLN 17 17 17 GLN GLN G . n G 1 18 LEU 18 18 18 LEU LEU G . n G 1 19 ALA 19 19 19 ALA ALA G . n G 1 20 ILE 20 20 20 ILE ILE G . n G 1 21 VAL 21 21 21 VAL VAL G . n G 1 22 PHE 22 22 22 PHE PHE G . n G 1 23 LEU 23 23 23 LEU LEU G . n G 1 24 LEU 24 24 24 LEU LEU G . n G 1 25 ARG 25 25 25 ARG ARG G . n G 1 26 GLY 26 26 26 GLY GLY G . n H 1 1 ASP 1 1 1 ASP ASP H . n H 1 2 SER 2 2 2 SER SER H . n H 1 3 LEU 3 3 3 LEU LEU H . n H 1 4 LYS 4 4 4 LYS LYS H . n H 1 5 TRP 5 5 5 TRP TRP H . n H 1 6 ILE 6 6 6 ILE ILE H . n H 1 7 VAL 7 7 7 VAL VAL H . n H 1 8 PHE 8 8 8 PHE PHE H . n H 1 9 LEU 9 9 9 LEU LEU H . n H 1 10 LEU 10 10 10 LEU LEU H . n H 1 11 PHE 11 11 11 PHE PHE H . n H 1 12 LEU 12 12 12 LEU LEU H . n H 1 13 ILE 13 13 13 ILE ILE H . n H 1 14 VAL 14 14 14 VAL VAL H . n H 1 15 LEU 15 15 15 LEU LEU H . n H 1 16 LEU 16 16 16 LEU LEU H . n H 1 17 GLN 17 17 17 GLN GLN H . n H 1 18 LEU 18 18 18 LEU LEU H . n H 1 19 ALA 19 19 19 ALA ALA H . n H 1 20 ILE 20 20 20 ILE ILE H . n H 1 21 VAL 21 21 21 VAL VAL H . n H 1 22 PHE 22 22 22 PHE PHE H . n H 1 23 LEU 23 23 23 LEU LEU H . n H 1 24 LEU 24 24 24 LEU LEU H . n H 1 25 ARG 25 25 25 ARG ARG H . n H 1 26 GLY 26 26 ? ? ? H . n I 1 1 ASP 1 1 1 ASP ASP I . n I 1 2 SER 2 2 2 SER SER I . n I 1 3 LEU 3 3 3 LEU LEU I . n I 1 4 LYS 4 4 4 LYS LYS I . n I 1 5 TRP 5 5 5 TRP TRP I . n I 1 6 ILE 6 6 6 ILE ILE I . n I 1 7 VAL 7 7 7 VAL VAL I . n I 1 8 PHE 8 8 8 PHE PHE I . n I 1 9 LEU 9 9 9 LEU LEU I . n I 1 10 LEU 10 10 10 LEU LEU I . n I 1 11 PHE 11 11 11 PHE PHE I . n I 1 12 LEU 12 12 12 LEU LEU I . n I 1 13 ILE 13 13 13 ILE ILE I . n I 1 14 VAL 14 14 14 VAL VAL I . n I 1 15 LEU 15 15 15 LEU LEU I . n I 1 16 LEU 16 16 16 LEU LEU I . n I 1 17 GLN 17 17 17 GLN GLN I . n I 1 18 LEU 18 18 18 LEU LEU I . n I 1 19 ALA 19 19 19 ALA ALA I . n I 1 20 ILE 20 20 20 ILE ILE I . n I 1 21 VAL 21 21 21 VAL VAL I . n I 1 22 PHE 22 22 22 PHE PHE I . n I 1 23 LEU 23 23 23 LEU LEU I . n I 1 24 LEU 24 24 24 LEU LEU I . n I 1 25 ARG 25 25 25 ARG ARG I . n I 1 26 GLY 26 26 ? ? ? I . n J 1 1 ASP 1 1 1 ASP ASP J . n J 1 2 SER 2 2 2 SER SER J . n J 1 3 LEU 3 3 3 LEU LEU J . n J 1 4 LYS 4 4 4 LYS LYS J . n J 1 5 TRP 5 5 5 TRP TRP J . n J 1 6 ILE 6 6 6 ILE ILE J . n J 1 7 VAL 7 7 7 VAL VAL J . n J 1 8 PHE 8 8 8 PHE PHE J . n J 1 9 LEU 9 9 9 LEU LEU J . n J 1 10 LEU 10 10 10 LEU LEU J . n J 1 11 PHE 11 11 11 PHE PHE J . n J 1 12 LEU 12 12 12 LEU LEU J . n J 1 13 ILE 13 13 13 ILE ILE J . n J 1 14 VAL 14 14 14 VAL VAL J . n J 1 15 LEU 15 15 15 LEU LEU J . n J 1 16 LEU 16 16 16 LEU LEU J . n J 1 17 GLN 17 17 17 GLN GLN J . n J 1 18 LEU 18 18 18 LEU LEU J . n J 1 19 ALA 19 19 19 ALA ALA J . n J 1 20 ILE 20 20 20 ILE ILE J . n J 1 21 VAL 21 21 21 VAL VAL J . n J 1 22 PHE 22 22 22 PHE PHE J . n J 1 23 LEU 23 23 23 LEU LEU J . n J 1 24 LEU 24 24 24 LEU LEU J . n J 1 25 ARG 25 25 25 ARG ARG J . n J 1 26 GLY 26 26 26 GLY GLY J . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email william.degrado@ucsf.edu _pdbx_contact_author.name_first William _pdbx_contact_author.name_last DeGrado _pdbx_contact_author.name_mi F _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4745-263X # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 HOH 1 101 2 HOH HOH C . K 2 HOH 2 102 1 HOH HOH C . L 2 HOH 1 101 3 HOH HOH F . M 2 HOH 1 101 4 HOH HOH I . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA pentameric 5 2 author_and_software_defined_assembly PISA pentameric 5 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,K 2 1 F,G,H,I,J,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5910 ? 1 MORE -80 ? 1 'SSA (A^2)' 7240 ? 2 'ABSA (A^2)' 5990 ? 2 MORE -82 ? 2 'SSA (A^2)' 7290 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-04-06 2 'Structure model' 1 1 2023-06-28 3 'Structure model' 1 2 2023-07-19 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -6.5576199105 -1.5414153822 -17.7991195784 0.260227034678 ? -0.0527136476423 ? 0.0417261373274 ? 0.42266203272 ? -0.0228187068235 ? 0.210503923582 ? 4.91046636968 ? -0.368978516619 ? 0.384530896153 ? 4.245797311 ? -0.879103505183 ? 3.39402800016 ? 0.0776087384736 ? 0.260989806671 ? -0.278435202274 ? -0.508278820651 ? -0.0300049525502 ? 0.106048299485 ? 0.453656686571 ? -0.700744975808 ? 0.128436221542 ? 2 'X-RAY DIFFRACTION' ? refined 3.58988147541 -2.94112534938 -18.6814918178 0.367477722023 ? 0.0358176299282 ? 0.00365799286205 ? 0.242732496407 ? -0.00379542046584 ? 0.148924541156 ? 3.33594086032 ? -0.150598997896 ? -0.49018139293 ? 2.14940600886 ? -0.573690353516 ? 1.23654455737 ? 0.370227901199 ? 0.721510403805 ? 0.346745523435 ? -0.384311938675 ? 0.183813151279 ? -0.0174476477278 ? 0.0955537476045 ? 0.149798241291 ? 0.580233190284 ? 3 'X-RAY DIFFRACTION' ? refined 7.78851327233 5.65750565327 -17.8126309215 0.340974312955 ? -0.0264480145396 ? 0.0124199997303 ? 0.36719237511 ? -0.011320694064 ? 0.299303382264 ? 3.47474671342 ? 0.610143751849 ? -0.494634913768 ? 3.136094847 ? 1.84232830626 ? 5.15070052331 ? -0.168062519555 ? -0.10679307238 ? -0.0769636136291 ? -0.185512080287 ? 0.00246509672333 ? -0.137214469067 ? 0.0396996402121 ? 0.107354004292 ? 0.13415297733 ? 4 'X-RAY DIFFRACTION' ? refined 0.604656913152 12.690548523 -18.5187931188 0.4435747611 ? -0.0751147949205 ? 0.0202219476962 ? 0.20800969496 ? 0.0852332445524 ? 0.341999698574 ? 5.322407679 ? -1.45226997011 ? 4.97332632731 ? 3.69525133972 ? -2.8499531304 ? 5.31334373516 ? 0.355004837045 ? 0.454535873716 ? -0.289062346243 ? -0.193180624402 ? 0.1570941901 ? -0.468901360898 ? 0.182822486691 ? 0.743238890783 ? 2.64959863306 ? 5 'X-RAY DIFFRACTION' ? refined -8.29472931168 7.5344382617 -19.6851365942 0.262116748194 ? 0.0794805791031 ? -0.0451072895414 ? 0.295574399137 ? 0.0129299291958 ? 0.243881739439 ? 4.11412195334 ? -0.762585435927 ? -1.02818332518 ? 2.15114222296 ? -0.755590607704 ? 3.25088196068 ? 0.366856852537 ? -0.121101187063 ? -0.00988558709488 ? -0.0301330615841 ? 0.210454301561 ? 0.203712163503 ? -0.182871469925 ? -0.743328444569 ? 0.248001566465 ? 6 'X-RAY DIFFRACTION' ? refined -21.9870912538 -11.5158576477 -22.0121103367 0.465674281272 ? 0.0484701363069 ? -0.0597549720021 ? 0.519185170345 ? 0.0439765743378 ? 0.2594524567 ? 1.73043685781 ? -0.295631051725 ? 1.12009268672 ? 3.67386794851 ? -0.741119201344 ? 2.98026513623 ? 0.17761880926 ? 0.203034439372 ? 0.490669889921 ? -0.103342642515 ? 0.251198796946 ? 0.287399862126 ? 1.2721912799 ? 0.0589738736263 ? 0.127945543609 ? 7 'X-RAY DIFFRACTION' ? refined -31.8018990398 -11.1099082619 -21.4789437831 0.710355924142 ? -0.0658613180624 ? -0.0558531607855 ? 0.575677962242 ? 0.0336575419145 ? 0.337159294321 ? 3.0997624536 ? -0.71616005024 ? 0.112847006167 ? 1.55586798618 ? -0.0027493348971 ? 0.00473081663708 ? -0.0291338324478 ? -0.12363334102 ? 0.527404355068 ? 0.227235594967 ? 0.30609321596 ? -0.465678994156 ? 2.69836050613 ? 0.164277129528 ? 1.33764011386 ? 8 'X-RAY DIFFRACTION' ? refined -34.6461248464 -2.13077429464 -22.5264261296 0.289711975853 ? -0.0867959669157 ? -0.00260352478613 ? 0.369879938249 ? 0.0134722052344 ? 0.307810959392 ? 2.03077963249 ? -0.714870439124 ? 2.27658847223 ? 1.93652074579 ? -1.05269824732 ? 6.51014548903 ? 0.121668193122 ? -0.712629866021 ? -0.121896904051 ? -0.0601917462947 ? 0.123157578849 ? 0.325949897519 ? -0.985022275527 ? -1.01848771544 ? 0.198097522239 ? 9 'X-RAY DIFFRACTION' ? refined -26.5587581071 3.65198844698 -22.5202652585 0.472744320497 ? -0.0193773755779 ? -0.0383252733912 ? 0.445353336335 ? 0.0122381847517 ? 0.378635064146 ? 2.16135635474 ? -1.50469238506 ? -1.04430222987 ? 6.16365812288 ? -0.404727828662 ? 5.1906416698 ? 0.418586342739 ? -0.0661756014686 ? -0.189140151822 ? -0.0722575240499 ? 0.206054073643 ? 0.244894029962 ? 0.0484430705577 ? -0.998236913181 ? 0.0309221777197 ? 10 'X-RAY DIFFRACTION' ? refined -18.3481362628 -2.26537982665 -21.9718501834 0.278330362232 ? -0.0469624222693 ? 0.0232104149257 ? 0.522678841868 ? -0.113434972889 ? 0.1583013758 ? 2.57774697921 ? 0.374620449597 ? 0.496627218121 ? 4.00123410973 ? -1.01503776276 ? 2.7472012461 ? 0.0679408751605 ? 0.096521295125 ? -0.17820428775 ? 0.0103876233116 ? 0.000919819972588 ? -0.426772790528 ? -0.546248596635 ? 0.412578376268 ? -0.294188741183 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A 1 A 1 ? A 24 A 24 ? ? ;chain 'A' and (resid 1 through 24 ) ; 2 'X-RAY DIFFRACTION' 2 B 1 B 1 ? B 25 B 25 ? ? ;chain 'B' and (resid 1 through 25 ) ; 3 'X-RAY DIFFRACTION' 3 C 1 C 1 ? C 25 C 25 ? ? ;chain 'C' and (resid 1 through 25 ) ; 4 'X-RAY DIFFRACTION' 4 D 1 D 1 ? D 25 D 25 ? ? ;chain 'D' and (resid 1 through 25 ) ; 5 'X-RAY DIFFRACTION' 5 E 1 E 2 ? E 25 E 26 ? ? ;chain 'E' and (resid 2 through 26 ) ; 6 'X-RAY DIFFRACTION' 6 F 1 F 1 ? F 25 F 25 ? ? ;chain 'F' and (resid 1 through 25 ) ; 7 'X-RAY DIFFRACTION' 7 G 1 G 2 ? G 25 G 26 ? ? ;chain 'G' and (resid 2 through 26 ) ; 8 'X-RAY DIFFRACTION' 8 H 1 H 1 ? H 25 H 25 ? ? ;chain 'H' and (resid 1 through 25 ) ; 9 'X-RAY DIFFRACTION' 9 I 1 I 1 ? I 25 I 25 ? ? ;chain 'I' and (resid 1 through 25 ) ; 10 'X-RAY DIFFRACTION' 10 J 1 J 1 ? J 26 J 26 ? ? ;chain 'J' and (resid 1 through 26 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 4 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 4 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 4 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 4 ? NZ ? A LYS 4 NZ 5 1 Y 1 B LYS 4 ? CG ? B LYS 4 CG 6 1 Y 1 B LYS 4 ? CD ? B LYS 4 CD 7 1 Y 1 B LYS 4 ? CE ? B LYS 4 CE 8 1 Y 1 B LYS 4 ? NZ ? B LYS 4 NZ 9 1 Y 1 C PHE 22 ? CG ? C PHE 22 CG 10 1 Y 1 C PHE 22 ? CD1 ? C PHE 22 CD1 11 1 Y 1 C PHE 22 ? CD2 ? C PHE 22 CD2 12 1 Y 1 C PHE 22 ? CE1 ? C PHE 22 CE1 13 1 Y 1 C PHE 22 ? CE2 ? C PHE 22 CE2 14 1 Y 1 C PHE 22 ? CZ ? C PHE 22 CZ 15 1 Y 1 C ARG 25 ? CG ? C ARG 25 CG 16 1 Y 1 C ARG 25 ? CD ? C ARG 25 CD 17 1 Y 1 C ARG 25 ? NE ? C ARG 25 NE 18 1 Y 1 C ARG 25 ? CZ ? C ARG 25 CZ 19 1 Y 1 C ARG 25 ? NH1 ? C ARG 25 NH1 20 1 Y 1 C ARG 25 ? NH2 ? C ARG 25 NH2 21 1 Y 1 D LYS 4 ? CG ? D LYS 4 CG 22 1 Y 1 D LYS 4 ? CD ? D LYS 4 CD 23 1 Y 1 D LYS 4 ? CE ? D LYS 4 CE 24 1 Y 1 D LYS 4 ? NZ ? D LYS 4 NZ 25 1 Y 1 D ARG 25 ? NE ? D ARG 25 NE 26 1 Y 1 D ARG 25 ? CZ ? D ARG 25 CZ 27 1 Y 1 D ARG 25 ? NH1 ? D ARG 25 NH1 28 1 Y 1 D ARG 25 ? NH2 ? D ARG 25 NH2 29 1 Y 1 E LYS 4 ? CG ? E LYS 4 CG 30 1 Y 1 E LYS 4 ? CD ? E LYS 4 CD 31 1 Y 1 E LYS 4 ? CE ? E LYS 4 CE 32 1 Y 1 E LYS 4 ? NZ ? E LYS 4 NZ 33 1 Y 1 F LYS 4 ? CD ? F LYS 4 CD 34 1 Y 1 F LYS 4 ? CE ? F LYS 4 CE 35 1 Y 1 F LYS 4 ? NZ ? F LYS 4 NZ 36 1 Y 1 G PHE 11 ? CG ? G PHE 11 CG 37 1 Y 1 G PHE 11 ? CD1 ? G PHE 11 CD1 38 1 Y 1 G PHE 11 ? CD2 ? G PHE 11 CD2 39 1 Y 1 G PHE 11 ? CE1 ? G PHE 11 CE1 40 1 Y 1 G PHE 11 ? CE2 ? G PHE 11 CE2 41 1 Y 1 G PHE 11 ? CZ ? G PHE 11 CZ 42 1 Y 1 G ARG 25 ? CG ? G ARG 25 CG 43 1 Y 1 G ARG 25 ? CD ? G ARG 25 CD 44 1 Y 1 G ARG 25 ? NE ? G ARG 25 NE 45 1 Y 1 G ARG 25 ? CZ ? G ARG 25 CZ 46 1 Y 1 G ARG 25 ? NH1 ? G ARG 25 NH1 47 1 Y 1 G ARG 25 ? NH2 ? G ARG 25 NH2 48 1 Y 1 H LYS 4 ? CG ? H LYS 4 CG 49 1 Y 1 H LYS 4 ? CD ? H LYS 4 CD 50 1 Y 1 H LYS 4 ? CE ? H LYS 4 CE 51 1 Y 1 H LYS 4 ? NZ ? H LYS 4 NZ 52 1 Y 1 H ARG 25 ? CG ? H ARG 25 CG 53 1 Y 1 H ARG 25 ? CD ? H ARG 25 CD 54 1 Y 1 H ARG 25 ? NE ? H ARG 25 NE 55 1 Y 1 H ARG 25 ? CZ ? H ARG 25 CZ 56 1 Y 1 H ARG 25 ? NH1 ? H ARG 25 NH1 57 1 Y 1 H ARG 25 ? NH2 ? H ARG 25 NH2 58 1 Y 1 I LYS 4 ? CG ? I LYS 4 CG 59 1 Y 1 I LYS 4 ? CD ? I LYS 4 CD 60 1 Y 1 I LYS 4 ? CE ? I LYS 4 CE 61 1 Y 1 I LYS 4 ? NZ ? I LYS 4 NZ 62 1 Y 1 I ARG 25 ? CG ? I ARG 25 CG 63 1 Y 1 I ARG 25 ? CD ? I ARG 25 CD 64 1 Y 1 I ARG 25 ? NE ? I ARG 25 NE 65 1 Y 1 I ARG 25 ? CZ ? I ARG 25 CZ 66 1 Y 1 I ARG 25 ? NH1 ? I ARG 25 NH1 67 1 Y 1 I ARG 25 ? NH2 ? I ARG 25 NH2 68 1 Y 1 J ARG 25 ? CZ ? J ARG 25 CZ 69 1 Y 1 J ARG 25 ? NH1 ? J ARG 25 NH1 70 1 Y 1 J ARG 25 ? NH2 ? J ARG 25 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 25 ? A ARG 25 2 1 Y 1 A GLY 26 ? A GLY 26 3 1 Y 1 B GLY 26 ? B GLY 26 4 1 Y 1 C GLY 26 ? C GLY 26 5 1 Y 1 D GLY 26 ? D GLY 26 6 1 Y 1 E ASP 1 ? E ASP 1 7 1 Y 1 F GLY 26 ? F GLY 26 8 1 Y 1 G ASP 1 ? G ASP 1 9 1 Y 1 H GLY 26 ? H GLY 26 10 1 Y 1 I GLY 26 ? I GLY 26 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLN N N N N 57 GLN CA C N S 58 GLN C C N N 59 GLN O O N N 60 GLN CB C N N 61 GLN CG C N N 62 GLN CD C N N 63 GLN OE1 O N N 64 GLN NE2 N N N 65 GLN OXT O N N 66 GLN H H N N 67 GLN H2 H N N 68 GLN HA H N N 69 GLN HB2 H N N 70 GLN HB3 H N N 71 GLN HG2 H N N 72 GLN HG3 H N N 73 GLN HE21 H N N 74 GLN HE22 H N N 75 GLN HXT H N N 76 GLY N N N N 77 GLY CA C N N 78 GLY C C N N 79 GLY O O N N 80 GLY OXT O N N 81 GLY H H N N 82 GLY H2 H N N 83 GLY HA2 H N N 84 GLY HA3 H N N 85 GLY HXT H N N 86 HOH O O N N 87 HOH H1 H N N 88 HOH H2 H N N 89 ILE N N N N 90 ILE CA C N S 91 ILE C C N N 92 ILE O O N N 93 ILE CB C N S 94 ILE CG1 C N N 95 ILE CG2 C N N 96 ILE CD1 C N N 97 ILE OXT O N N 98 ILE H H N N 99 ILE H2 H N N 100 ILE HA H N N 101 ILE HB H N N 102 ILE HG12 H N N 103 ILE HG13 H N N 104 ILE HG21 H N N 105 ILE HG22 H N N 106 ILE HG23 H N N 107 ILE HD11 H N N 108 ILE HD12 H N N 109 ILE HD13 H N N 110 ILE HXT H N N 111 LEU N N N N 112 LEU CA C N S 113 LEU C C N N 114 LEU O O N N 115 LEU CB C N N 116 LEU CG C N N 117 LEU CD1 C N N 118 LEU CD2 C N N 119 LEU OXT O N N 120 LEU H H N N 121 LEU H2 H N N 122 LEU HA H N N 123 LEU HB2 H N N 124 LEU HB3 H N N 125 LEU HG H N N 126 LEU HD11 H N N 127 LEU HD12 H N N 128 LEU HD13 H N N 129 LEU HD21 H N N 130 LEU HD22 H N N 131 LEU HD23 H N N 132 LEU HXT H N N 133 LYS N N N N 134 LYS CA C N S 135 LYS C C N N 136 LYS O O N N 137 LYS CB C N N 138 LYS CG C N N 139 LYS CD C N N 140 LYS CE C N N 141 LYS NZ N N N 142 LYS OXT O N N 143 LYS H H N N 144 LYS H2 H N N 145 LYS HA H N N 146 LYS HB2 H N N 147 LYS HB3 H N N 148 LYS HG2 H N N 149 LYS HG3 H N N 150 LYS HD2 H N N 151 LYS HD3 H N N 152 LYS HE2 H N N 153 LYS HE3 H N N 154 LYS HZ1 H N N 155 LYS HZ2 H N N 156 LYS HZ3 H N N 157 LYS HXT H N N 158 PHE N N N N 159 PHE CA C N S 160 PHE C C N N 161 PHE O O N N 162 PHE CB C N N 163 PHE CG C Y N 164 PHE CD1 C Y N 165 PHE CD2 C Y N 166 PHE CE1 C Y N 167 PHE CE2 C Y N 168 PHE CZ C Y N 169 PHE OXT O N N 170 PHE H H N N 171 PHE H2 H N N 172 PHE HA H N N 173 PHE HB2 H N N 174 PHE HB3 H N N 175 PHE HD1 H N N 176 PHE HD2 H N N 177 PHE HE1 H N N 178 PHE HE2 H N N 179 PHE HZ H N N 180 PHE HXT H N N 181 SER N N N N 182 SER CA C N S 183 SER C C N N 184 SER O O N N 185 SER CB C N N 186 SER OG O N N 187 SER OXT O N N 188 SER H H N N 189 SER H2 H N N 190 SER HA H N N 191 SER HB2 H N N 192 SER HB3 H N N 193 SER HG H N N 194 SER HXT H N N 195 TRP N N N N 196 TRP CA C N S 197 TRP C C N N 198 TRP O O N N 199 TRP CB C N N 200 TRP CG C Y N 201 TRP CD1 C Y N 202 TRP CD2 C Y N 203 TRP NE1 N Y N 204 TRP CE2 C Y N 205 TRP CE3 C Y N 206 TRP CZ2 C Y N 207 TRP CZ3 C Y N 208 TRP CH2 C Y N 209 TRP OXT O N N 210 TRP H H N N 211 TRP H2 H N N 212 TRP HA H N N 213 TRP HB2 H N N 214 TRP HB3 H N N 215 TRP HD1 H N N 216 TRP HE1 H N N 217 TRP HE3 H N N 218 TRP HZ2 H N N 219 TRP HZ3 H N N 220 TRP HH2 H N N 221 TRP HXT H N N 222 VAL N N N N 223 VAL CA C N S 224 VAL C C N N 225 VAL O O N N 226 VAL CB C N N 227 VAL CG1 C N N 228 VAL CG2 C N N 229 VAL OXT O N N 230 VAL H H N N 231 VAL H2 H N N 232 VAL HA H N N 233 VAL HB H N N 234 VAL HG11 H N N 235 VAL HG12 H N N 236 VAL HG13 H N N 237 VAL HG21 H N N 238 VAL HG22 H N N 239 VAL HG23 H N N 240 VAL HXT H N N 241 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLN N CA sing N N 54 GLN N H sing N N 55 GLN N H2 sing N N 56 GLN CA C sing N N 57 GLN CA CB sing N N 58 GLN CA HA sing N N 59 GLN C O doub N N 60 GLN C OXT sing N N 61 GLN CB CG sing N N 62 GLN CB HB2 sing N N 63 GLN CB HB3 sing N N 64 GLN CG CD sing N N 65 GLN CG HG2 sing N N 66 GLN CG HG3 sing N N 67 GLN CD OE1 doub N N 68 GLN CD NE2 sing N N 69 GLN NE2 HE21 sing N N 70 GLN NE2 HE22 sing N N 71 GLN OXT HXT sing N N 72 GLY N CA sing N N 73 GLY N H sing N N 74 GLY N H2 sing N N 75 GLY CA C sing N N 76 GLY CA HA2 sing N N 77 GLY CA HA3 sing N N 78 GLY C O doub N N 79 GLY C OXT sing N N 80 GLY OXT HXT sing N N 81 HOH O H1 sing N N 82 HOH O H2 sing N N 83 ILE N CA sing N N 84 ILE N H sing N N 85 ILE N H2 sing N N 86 ILE CA C sing N N 87 ILE CA CB sing N N 88 ILE CA HA sing N N 89 ILE C O doub N N 90 ILE C OXT sing N N 91 ILE CB CG1 sing N N 92 ILE CB CG2 sing N N 93 ILE CB HB sing N N 94 ILE CG1 CD1 sing N N 95 ILE CG1 HG12 sing N N 96 ILE CG1 HG13 sing N N 97 ILE CG2 HG21 sing N N 98 ILE CG2 HG22 sing N N 99 ILE CG2 HG23 sing N N 100 ILE CD1 HD11 sing N N 101 ILE CD1 HD12 sing N N 102 ILE CD1 HD13 sing N N 103 ILE OXT HXT sing N N 104 LEU N CA sing N N 105 LEU N H sing N N 106 LEU N H2 sing N N 107 LEU CA C sing N N 108 LEU CA CB sing N N 109 LEU CA HA sing N N 110 LEU C O doub N N 111 LEU C OXT sing N N 112 LEU CB CG sing N N 113 LEU CB HB2 sing N N 114 LEU CB HB3 sing N N 115 LEU CG CD1 sing N N 116 LEU CG CD2 sing N N 117 LEU CG HG sing N N 118 LEU CD1 HD11 sing N N 119 LEU CD1 HD12 sing N N 120 LEU CD1 HD13 sing N N 121 LEU CD2 HD21 sing N N 122 LEU CD2 HD22 sing N N 123 LEU CD2 HD23 sing N N 124 LEU OXT HXT sing N N 125 LYS N CA sing N N 126 LYS N H sing N N 127 LYS N H2 sing N N 128 LYS CA C sing N N 129 LYS CA CB sing N N 130 LYS CA HA sing N N 131 LYS C O doub N N 132 LYS C OXT sing N N 133 LYS CB CG sing N N 134 LYS CB HB2 sing N N 135 LYS CB HB3 sing N N 136 LYS CG CD sing N N 137 LYS CG HG2 sing N N 138 LYS CG HG3 sing N N 139 LYS CD CE sing N N 140 LYS CD HD2 sing N N 141 LYS CD HD3 sing N N 142 LYS CE NZ sing N N 143 LYS CE HE2 sing N N 144 LYS CE HE3 sing N N 145 LYS NZ HZ1 sing N N 146 LYS NZ HZ2 sing N N 147 LYS NZ HZ3 sing N N 148 LYS OXT HXT sing N N 149 PHE N CA sing N N 150 PHE N H sing N N 151 PHE N H2 sing N N 152 PHE CA C sing N N 153 PHE CA CB sing N N 154 PHE CA HA sing N N 155 PHE C O doub N N 156 PHE C OXT sing N N 157 PHE CB CG sing N N 158 PHE CB HB2 sing N N 159 PHE CB HB3 sing N N 160 PHE CG CD1 doub Y N 161 PHE CG CD2 sing Y N 162 PHE CD1 CE1 sing Y N 163 PHE CD1 HD1 sing N N 164 PHE CD2 CE2 doub Y N 165 PHE CD2 HD2 sing N N 166 PHE CE1 CZ doub Y N 167 PHE CE1 HE1 sing N N 168 PHE CE2 CZ sing Y N 169 PHE CE2 HE2 sing N N 170 PHE CZ HZ sing N N 171 PHE OXT HXT sing N N 172 SER N CA sing N N 173 SER N H sing N N 174 SER N H2 sing N N 175 SER CA C sing N N 176 SER CA CB sing N N 177 SER CA HA sing N N 178 SER C O doub N N 179 SER C OXT sing N N 180 SER CB OG sing N N 181 SER CB HB2 sing N N 182 SER CB HB3 sing N N 183 SER OG HG sing N N 184 SER OXT HXT sing N N 185 TRP N CA sing N N 186 TRP N H sing N N 187 TRP N H2 sing N N 188 TRP CA C sing N N 189 TRP CA CB sing N N 190 TRP CA HA sing N N 191 TRP C O doub N N 192 TRP C OXT sing N N 193 TRP CB CG sing N N 194 TRP CB HB2 sing N N 195 TRP CB HB3 sing N N 196 TRP CG CD1 doub Y N 197 TRP CG CD2 sing Y N 198 TRP CD1 NE1 sing Y N 199 TRP CD1 HD1 sing N N 200 TRP CD2 CE2 doub Y N 201 TRP CD2 CE3 sing Y N 202 TRP NE1 CE2 sing Y N 203 TRP NE1 HE1 sing N N 204 TRP CE2 CZ2 sing Y N 205 TRP CE3 CZ3 doub Y N 206 TRP CE3 HE3 sing N N 207 TRP CZ2 CH2 doub Y N 208 TRP CZ2 HZ2 sing N N 209 TRP CZ3 CH2 sing Y N 210 TRP CZ3 HZ3 sing N N 211 TRP CH2 HH2 sing N N 212 TRP OXT HXT sing N N 213 VAL N CA sing N N 214 VAL N H sing N N 215 VAL N H2 sing N N 216 VAL CA C sing N N 217 VAL CA CB sing N N 218 VAL CA HA sing N N 219 VAL C O doub N N 220 VAL C OXT sing N N 221 VAL CB CG1 sing N N 222 VAL CB CG2 sing N N 223 VAL CB HB sing N N 224 VAL CG1 HG11 sing N N 225 VAL CG1 HG12 sing N N 226 VAL CG1 HG13 sing N N 227 VAL CG2 HG21 sing N N 228 VAL CG2 HG22 sing N N 229 VAL CG2 HG23 sing N N 230 VAL OXT HXT sing N N 231 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' K99GM138753 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122603 2 'National Science Foundation (NSF, United States)' 'United States' CHE1709506 3 'Air Force Office of Scientific Research' 'United States' FA9550-19-1-0331 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6MCT _pdbx_initial_refinement_model.details 'PDB entry 6MCT' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'SDS PAGE gel electrophoresis' # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 #