HEADER TRANSPORT PROTEIN 24-MAR-22 7UG8 TITLE CRYSTAL STRUCTURE OF A SOLUTE RECEPTOR FROM SYNECHOCOCCUS CC9311 IN TITLE 2 COMPLEX WITH ALPHA-KETOVALERIC AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOACID-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. (STRAIN CC9311); SOURCE 3 ORGANISM_TAXID: 64471; SOURCE 4 STRAIN: CC9311; SOURCE 5 GENE: SYNC_2776; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEMO 21 (DE3) KEYWDS SUBSTRATE-BINDING PROTEIN, MARINE CYANOBACTERIA, KETOACID-BINDING KEYWDS 2 PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.S.SHAH,H.MIKOLAJEK,C.M.ORR,V.MYKHAYLYK,R.J.OWENS,I.T.PAULSEN REVDAT 2 22-MAY-24 7UG8 1 REMARK REVDAT 1 19-APR-23 7UG8 0 JRNL AUTH B.S.SHAH,H.MIKOLAJEK,C.M.ORR,V.MYKHAYLYK,R.OWENS,I.T.PAULSEN JRNL TITL CRYSTAL STRUCTURE OF A SOLUTE RECEPTOR FROM SYNECHOCOCCUS JRNL TITL 2 CC9311 IN COMPLEX WITH ALPHA-KETOVALERIC AND CALCIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 50762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.834 REMARK 3 FREE R VALUE TEST SET COUNT : 2454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.34100 REMARK 3 B22 (A**2) : -1.64200 REMARK 3 B33 (A**2) : -0.18300 REMARK 3 B12 (A**2) : -1.22400 REMARK 3 B13 (A**2) : -0.94800 REMARK 3 B23 (A**2) : 1.71500 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5356 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5010 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7258 ; 1.509 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11483 ; 1.375 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 667 ; 6.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 302 ;32.739 ;21.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 851 ;15.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;13.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6219 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1359 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1070 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 50 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2576 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2650 ; 3.873 ; 4.377 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2649 ; 3.867 ; 4.375 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3314 ; 5.008 ; 6.539 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3315 ; 5.008 ; 6.542 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 4.753 ; 4.852 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2703 ; 4.748 ; 4.850 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3941 ; 6.790 ; 7.066 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3942 ; 6.790 ; 7.066 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 334 NULL REMARK 3 1 B 7 B 334 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7UG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1000264115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 50 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7552, 3.1790, 3.4925, 4.7686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 50.277 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 23.30 REMARK 200 R MERGE FOR SHELL (I) : 0.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M SODIUM/POTASSIUM PHOSPHATE, REMARK 280 0.1M BIS TRIS PROPANE 7.5, 20% PEG 3350 CRYO: 30 % PEG 400, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 GLU A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 GLU A 339 REMARK 465 GLY A 340 REMARK 465 ASP A 341 REMARK 465 GLN A 342 REMARK 465 PRO A 343 REMARK 465 GLY A 344 REMARK 465 ASP A 345 REMARK 465 GLN A 346 REMARK 465 ARG A 347 REMARK 465 GLU B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 SER B 337 REMARK 465 SER B 338 REMARK 465 GLU B 339 REMARK 465 GLY B 340 REMARK 465 ASP B 341 REMARK 465 GLN B 342 REMARK 465 PRO B 343 REMARK 465 GLY B 344 REMARK 465 ASP B 345 REMARK 465 GLN B 346 REMARK 465 ARG B 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN A 145 HG SER A 149 1.21 REMARK 500 HE1 TRP A 19 HD1 HIS A 74 1.22 REMARK 500 HE1 TRP B 19 HD1 HIS B 74 1.22 REMARK 500 HZ2 LYS A 141 O LEU A 184 1.51 REMARK 500 OD2 ASP A 199 HH TYR A 259 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 112.48 -164.75 REMARK 500 THR A 91 -77.21 -108.67 REMARK 500 ALA A 129 34.55 -154.64 REMARK 500 ASN A 146 -177.04 -172.75 REMARK 500 PHE A 194 -82.61 -128.63 REMARK 500 THR A 195 -61.18 -134.90 REMARK 500 ASP A 303 114.69 -167.55 REMARK 500 GLU A 328 -50.36 -132.20 REMARK 500 ASN B 84 112.26 -164.63 REMARK 500 THR B 91 -80.14 -114.40 REMARK 500 ALA B 129 33.79 -152.93 REMARK 500 ASN B 146 -179.63 -170.43 REMARK 500 ILE B 157 118.08 -163.57 REMARK 500 PHE B 194 -84.98 -132.95 REMARK 500 THR B 195 -59.79 -138.75 REMARK 500 ASP B 303 115.18 -164.43 REMARK 500 GLU B 328 -46.04 -131.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 135 OE1 REMARK 620 2 GLU A 193 OE1 77.6 REMARK 620 3 GLU A 193 OE2 130.7 53.2 REMARK 620 4 PHE A 194 O 80.1 83.9 96.3 REMARK 620 5 GLU A 219 OE1 81.5 95.4 98.2 161.3 REMARK 620 6 69O A 401 O05 87.4 163.2 141.8 86.2 89.6 REMARK 620 7 69O A 401 O08 151.5 129.1 77.2 92.1 102.7 64.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 135 OE1 REMARK 620 2 GLU B 193 OE1 149.5 REMARK 620 3 GLU B 193 OE2 101.7 48.0 REMARK 620 4 PHE B 194 O 93.0 87.3 84.0 REMARK 620 5 GLU B 219 OE2 80.7 99.6 100.1 173.1 REMARK 620 6 69O B 602 O05 87.9 122.5 169.9 92.4 84.5 REMARK 620 7 69O B 602 O07 148.7 60.4 106.0 75.8 108.1 63.9 REMARK 620 N 1 2 3 4 5 6 DBREF 7UG8 A 1 347 UNP Q0I6F8 Q0I6F8_SYNS3 32 378 DBREF 7UG8 B 1 347 UNP Q0I6F8 Q0I6F8_SYNS3 32 378 SEQRES 1 A 347 GLU GLU THR ARG ALA SER GLY LEU PRO GLN VAL ARG TRP SEQRES 2 A 347 ARG MET ALA THR SER TRP PRO ILE SER LEU ASP THR ILE SEQRES 3 A 347 TYR GLY GLY ALA VAL THR ILE CYS GLN ARG VAL GLU GLU SEQRES 4 A 347 MET SER GLY GLY ALA PHE ARG ILE GLU PRO PHE ALA ALA SEQRES 5 A 347 GLY GLU ILE VAL PRO GLY LEU GLU VAL LEU ASP ALA VAL SEQRES 6 A 347 GLN ALA ARG SER VAL GLU CYS GLY HIS THR ALA SER TYR SEQRES 7 A 347 TYR TYR ILE GLY LYS ASN PRO ALA PHE ALA PHE GLY THR SEQRES 8 A 347 ALA VAL PRO PHE GLY LEU SER ALA GLN GLN GLN ASN THR SEQRES 9 A 347 TRP LEU TYR TYR GLY GLY GLY ASN GLU ASP MET ASN ALA SEQRES 10 A 347 LEU PHE ALA ASP PHE GLY ALA VAL SER PHE PRO ALA GLY SEQRES 11 A 347 ASN THR GLY GLY GLN LEU GLY GLY TRP PHE LYS LYS PRO SEQRES 12 A 347 ILE GLN ASN LEU ALA SER LEU GLN GLY LEU LYS MET ARG SEQRES 13 A 347 ILE PRO GLY LEU GLY GLY LYS VAL MET ALA LYS LEU GLY SEQRES 14 A 347 VAL ASN VAL GLN VAL LEU PRO GLY GLY GLU ILE TYR LEU SEQRES 15 A 347 ALA LEU GLU ARG GLY THR ILE ASP ALA ALA GLU PHE THR SEQRES 16 A 347 GLY PRO TYR ASP ASP GLU LYS LEU GLY LEU ALA LYS ALA SEQRES 17 A 347 ALA LYS HIS TYR TYR TYR PRO GLY TRP TRP GLU PRO GLY SEQRES 18 A 347 PRO THR LEU MET ALA LEU VAL ASN ARG LYS ALA TRP SER SEQRES 19 A 347 ASP LEU PRO LYS GLU TYR GLN ALA MET PHE ARG THR ALA SEQRES 20 A 347 CYS TYR GLU ALA ASN LEU GLY MET LEU SER ASN TYR GLU SEQRES 21 A 347 TRP ARG ASN SER GLU ALA LEU GLN ARG ILE THR ARG GLN SEQRES 22 A 347 GLY ILE LYS LEU GLU ARG TYR GLY ASP ASP ILE LEU LYS SEQRES 23 A 347 ALA ALA ARG SER ALA SER ALA GLU ILE PHE GLN GLU LEU SEQRES 24 A 347 ALA ASP ALA ASP ALA GLY PHE LYS ALA LEU LEU GLU ARG SEQRES 25 A 347 TRP ARG LEU PHE ARG ARG ASP THR ARG ARG TRP ASN ASN SEQRES 26 A 347 ILE ASN GLU LEU PRO LEU ALA GLU PHE ASP GLU SER SER SEQRES 27 A 347 GLU GLY ASP GLN PRO GLY ASP GLN ARG SEQRES 1 B 347 GLU GLU THR ARG ALA SER GLY LEU PRO GLN VAL ARG TRP SEQRES 2 B 347 ARG MET ALA THR SER TRP PRO ILE SER LEU ASP THR ILE SEQRES 3 B 347 TYR GLY GLY ALA VAL THR ILE CYS GLN ARG VAL GLU GLU SEQRES 4 B 347 MET SER GLY GLY ALA PHE ARG ILE GLU PRO PHE ALA ALA SEQRES 5 B 347 GLY GLU ILE VAL PRO GLY LEU GLU VAL LEU ASP ALA VAL SEQRES 6 B 347 GLN ALA ARG SER VAL GLU CYS GLY HIS THR ALA SER TYR SEQRES 7 B 347 TYR TYR ILE GLY LYS ASN PRO ALA PHE ALA PHE GLY THR SEQRES 8 B 347 ALA VAL PRO PHE GLY LEU SER ALA GLN GLN GLN ASN THR SEQRES 9 B 347 TRP LEU TYR TYR GLY GLY GLY ASN GLU ASP MET ASN ALA SEQRES 10 B 347 LEU PHE ALA ASP PHE GLY ALA VAL SER PHE PRO ALA GLY SEQRES 11 B 347 ASN THR GLY GLY GLN LEU GLY GLY TRP PHE LYS LYS PRO SEQRES 12 B 347 ILE GLN ASN LEU ALA SER LEU GLN GLY LEU LYS MET ARG SEQRES 13 B 347 ILE PRO GLY LEU GLY GLY LYS VAL MET ALA LYS LEU GLY SEQRES 14 B 347 VAL ASN VAL GLN VAL LEU PRO GLY GLY GLU ILE TYR LEU SEQRES 15 B 347 ALA LEU GLU ARG GLY THR ILE ASP ALA ALA GLU PHE THR SEQRES 16 B 347 GLY PRO TYR ASP ASP GLU LYS LEU GLY LEU ALA LYS ALA SEQRES 17 B 347 ALA LYS HIS TYR TYR TYR PRO GLY TRP TRP GLU PRO GLY SEQRES 18 B 347 PRO THR LEU MET ALA LEU VAL ASN ARG LYS ALA TRP SER SEQRES 19 B 347 ASP LEU PRO LYS GLU TYR GLN ALA MET PHE ARG THR ALA SEQRES 20 B 347 CYS TYR GLU ALA ASN LEU GLY MET LEU SER ASN TYR GLU SEQRES 21 B 347 TRP ARG ASN SER GLU ALA LEU GLN ARG ILE THR ARG GLN SEQRES 22 B 347 GLY ILE LYS LEU GLU ARG TYR GLY ASP ASP ILE LEU LYS SEQRES 23 B 347 ALA ALA ARG SER ALA SER ALA GLU ILE PHE GLN GLU LEU SEQRES 24 B 347 ALA ASP ALA ASP ALA GLY PHE LYS ALA LEU LEU GLU ARG SEQRES 25 B 347 TRP ARG LEU PHE ARG ARG ASP THR ARG ARG TRP ASN ASN SEQRES 26 B 347 ILE ASN GLU LEU PRO LEU ALA GLU PHE ASP GLU SER SER SEQRES 27 B 347 GLU GLY ASP GLN PRO GLY ASP GLN ARG HET 69O A 401 15 HET EDO A 402 10 HET CA A 403 1 HET EDO B 601 10 HET 69O B 602 15 HET CA B 603 1 HETNAM 69O 2-OXOPENTANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN 69O 2-KETOPENTANOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 69O 2(C5 H8 O3) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *255(H2 O) HELIX 1 AA1 THR A 25 SER A 41 1 17 HELIX 2 AA2 PRO A 57 LEU A 59 5 3 HELIX 3 AA3 GLU A 60 ALA A 67 1 8 HELIX 4 AA4 ALA A 76 ILE A 81 5 6 HELIX 5 AA5 ASN A 84 THR A 91 5 8 HELIX 6 AA6 SER A 98 GLY A 109 1 12 HELIX 7 AA7 GLY A 110 ASP A 121 1 12 HELIX 8 AA8 ASN A 146 GLN A 151 5 6 HELIX 9 AA9 PRO A 158 LEU A 168 1 11 HELIX 10 AB1 PRO A 176 GLY A 178 5 3 HELIX 11 AB2 GLU A 179 ARG A 186 1 8 HELIX 12 AB3 GLY A 196 GLY A 204 1 9 HELIX 13 AB4 GLY A 204 ALA A 209 1 6 HELIX 14 AB5 ARG A 230 ASP A 235 1 6 HELIX 15 AB6 PRO A 237 GLN A 273 1 37 HELIX 16 AB7 GLY A 281 ALA A 302 1 22 HELIX 17 AB8 ASP A 303 GLU A 328 1 26 HELIX 18 AB9 GLU A 328 PHE A 334 1 7 HELIX 19 AC1 LEU B 23 SER B 41 1 19 HELIX 20 AC2 PRO B 57 LEU B 59 5 3 HELIX 21 AC3 GLU B 60 ALA B 67 1 8 HELIX 22 AC4 ALA B 76 ILE B 81 5 6 HELIX 23 AC5 ASN B 84 THR B 91 5 8 HELIX 24 AC6 SER B 98 GLY B 109 1 12 HELIX 25 AC7 GLY B 110 ASP B 121 1 12 HELIX 26 AC8 ASN B 146 GLN B 151 5 6 HELIX 27 AC9 PRO B 158 LEU B 168 1 11 HELIX 28 AD1 PRO B 176 GLY B 178 5 3 HELIX 29 AD2 GLU B 179 ARG B 186 1 8 HELIX 30 AD3 GLY B 196 LEU B 203 1 8 HELIX 31 AD4 GLY B 204 ALA B 209 1 6 HELIX 32 AD5 ARG B 230 LEU B 236 1 7 HELIX 33 AD6 PRO B 237 GLN B 273 1 37 HELIX 34 AD7 GLY B 281 ALA B 302 1 22 HELIX 35 AD8 ASP B 303 GLU B 328 1 26 HELIX 36 AD9 GLU B 328 PHE B 334 1 7 SHEET 1 AA1 5 PHE A 45 PHE A 50 0 SHEET 2 AA1 5 VAL A 11 THR A 17 1 N MET A 15 O GLU A 48 SHEET 3 AA1 5 CYS A 72 THR A 75 1 O CYS A 72 N ALA A 16 SHEET 4 AA1 5 THR A 223 ASN A 229 -1 O LEU A 227 N GLY A 73 SHEET 5 AA1 5 ALA A 124 ASN A 131 -1 N ALA A 129 O LEU A 224 SHEET 1 AA2 6 ASN A 171 GLN A 173 0 SHEET 2 AA2 6 LYS A 154 ARG A 156 1 N MET A 155 O GLN A 173 SHEET 3 AA2 6 ALA A 191 ALA A 192 1 O ALA A 191 N ARG A 156 SHEET 4 AA2 6 TRP A 139 PHE A 140 -1 N TRP A 139 O ALA A 192 SHEET 5 AA2 6 HIS A 211 TYR A 214 -1 O HIS A 211 N PHE A 140 SHEET 6 AA2 6 LYS A 276 ARG A 279 1 O GLU A 278 N TYR A 212 SHEET 1 AA3 5 PHE B 45 PHE B 50 0 SHEET 2 AA3 5 VAL B 11 THR B 17 1 N MET B 15 O GLU B 48 SHEET 3 AA3 5 CYS B 72 THR B 75 1 O CYS B 72 N ALA B 16 SHEET 4 AA3 5 THR B 223 ASN B 229 -1 O LEU B 227 N GLY B 73 SHEET 5 AA3 5 ALA B 124 ASN B 131 -1 N ALA B 129 O LEU B 224 SHEET 1 AA4 6 ASN B 171 GLN B 173 0 SHEET 2 AA4 6 LYS B 154 ARG B 156 1 N MET B 155 O GLN B 173 SHEET 3 AA4 6 ALA B 191 ALA B 192 1 O ALA B 191 N ARG B 156 SHEET 4 AA4 6 TRP B 139 PHE B 140 -1 N TRP B 139 O ALA B 192 SHEET 5 AA4 6 HIS B 211 TYR B 214 -1 O HIS B 211 N PHE B 140 SHEET 6 AA4 6 LYS B 276 ARG B 279 1 O LYS B 276 N TYR B 212 LINK OE1 GLN A 135 CA CA A 403 1555 1555 2.44 LINK OE1 GLU A 193 CA CA A 403 1555 1555 2.47 LINK OE2 GLU A 193 CA CA A 403 1555 1555 2.38 LINK O PHE A 194 CA CA A 403 1555 1555 2.29 LINK OE1 GLU A 219 CA CA A 403 1555 1555 2.36 LINK O05 69O A 401 CA CA A 403 1555 1555 2.48 LINK O08 69O A 401 CA CA A 403 1555 1555 2.31 LINK OE1 GLN B 135 CA CA B 603 1555 1555 2.32 LINK OE1 GLU B 193 CA CA B 603 1555 1555 2.84 LINK OE2 GLU B 193 CA CA B 603 1555 1555 2.47 LINK O PHE B 194 CA CA B 603 1555 1555 2.23 LINK OE2 GLU B 219 CA CA B 603 1555 1555 2.40 LINK O05 69O B 602 CA CA B 603 1555 1555 2.44 LINK O07 69O B 602 CA CA B 603 1555 1555 2.56 CISPEP 1 TYR A 214 PRO A 215 0 -6.93 CISPEP 2 TYR B 214 PRO B 215 0 -8.25 CRYST1 54.680 54.750 61.150 69.65 77.73 67.27 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018288 -0.007663 -0.001798 0.00000 SCALE2 0.000000 0.019803 -0.006109 0.00000 SCALE3 0.000000 0.000000 0.017514 0.00000