HEADER LIGASE 04-APR-22 7ULD TITLE GTP COMPLEX OF F420-GAMMA GLUTAMYL LIGASE (COFE) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME F420:L-GLUTAMATE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COENZYME F420-0:L-GLUTAMATE LIGASE,COENZYME F420-1:GAMMA-L- COMPND 5 GLUTAMATE LIGASE,F420:GLUTAMYL LIGASE; COMPND 6 EC: 6.3.2.31,6.3.2.34; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 GENE: COFE, AF_2256; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE SUBSTRATE COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BASHIRI,C.J.SQUIRE REVDAT 2 25-OCT-23 7ULD 1 REMARK REVDAT 1 12-APR-23 7ULD 0 JRNL AUTH G.BASHIRI,W.BRAMLEY,E.BULLOCH,S.STUTELY,M.MIDDLEDITCH, JRNL AUTH 2 P.YOUNG,M.NAQVI,P.HARRIS,E.N.BAKER,C.J.SQUIRE JRNL TITL A UNIVERSAL MECHANISM FOR POLY-GLUTAMYLATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 52542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.112 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2012 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1954 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2731 ; 1.374 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4521 ; 1.377 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;26.200 ;21.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;11.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2265 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3958 ; 0.968 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ULD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55332 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PHN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M AMMONIUM SULFATE, 0.1 M CITRATE REMARK 280 PH 4.5, 2 MM GTP, 5 MM MN2+, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.62150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.31075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.93225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.62150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.93225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.31075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 186.48600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 566 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 NE CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 171 NZ REMARK 470 ARG A 247 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 49 34.71 -94.43 REMARK 500 PHE A 156 -22.47 77.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD2 REMARK 620 2 ASP A 150 OD1 166.6 REMARK 620 3 GTP A 305 O2G 93.7 80.6 REMARK 620 4 HOH A 418 O 96.3 89.2 169.7 REMARK 620 5 HOH A 442 O 79.4 89.8 101.2 78.4 REMARK 620 6 HOH A 547 O 101.1 90.8 87.0 93.5 171.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 151 OG1 REMARK 620 2 GLU A 208 OE1 85.3 REMARK 620 3 GTP A 305 O3G 93.6 89.2 REMARK 620 4 GTP A 305 O1A 176.0 91.9 89.3 REMARK 620 5 GTP A 305 O2B 93.9 178.6 89.7 88.9 REMARK 620 6 HOH A 407 O 90.0 91.8 176.3 87.1 89.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VW3 RELATED DB: PDB REMARK 900 SOME PROTEIN COMPLEXED WITH F420-1 AND GDP REMARK 900 RELATED ID: 6VW5 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH L-GLUTAMATE AND GTP DBREF 7ULD A 1 249 UNP O28028 COFE_ARCFU 1 249 SEQADV 7ULD GLY A -1 UNP O28028 EXPRESSION TAG SEQADV 7ULD ALA A 0 UNP O28028 EXPRESSION TAG SEQRES 1 A 251 GLY ALA MET ARG VAL GLU VAL PHE PRO VAL GLU GLY LEU SEQRES 2 A 251 PRO LEU ILE LYS GLU GLY ASP ASP LEU ALA GLU LEU ILE SEQRES 3 A 251 SER SER ARG VAL ARG PHE GLU ASP GLY ASP VAL LEU VAL SEQRES 4 A 251 VAL CYS SER THR VAL ILE SER LYS ALA GLU GLY ARG ILE SEQRES 5 A 251 ARG ARG LEU GLU GLU PHE ASN PRO SER GLU ARG ALA LYS SEQRES 6 A 251 GLU ILE ALA ALA ARG ILE GLY LYS PRO ALA GLU PHE VAL SEQRES 7 A 251 GLN ALA VAL LEU GLU GLU SER GLU GLU VAL LEU LEU ASP SEQRES 8 A 251 PHE PRO PHE LEU LEU VAL LYS ALA LYS PHE GLY ASN VAL SEQRES 9 A 251 CYS VAL ASN ALA GLY ILE ASP ALA SER ASN VAL GLU GLU SEQRES 10 A 251 GLY SER LEU LEU LEU PRO PRO LEU ASP PRO ASP GLY SER SEQRES 11 A 251 ALA GLU LYS LEU ARG ARG ARG ILE LEU GLU LEU THR GLY SEQRES 12 A 251 LYS ARG VAL GLY VAL ILE ILE THR ASP THR ASN GLY ARG SEQRES 13 A 251 CYS PHE ARG ARG GLY VAL VAL GLY PHE ALA ILE GLY ILE SEQRES 14 A 251 SER GLY VAL LYS ALA MET LYS ASP TRP ILE GLY ARG LYS SEQRES 15 A 251 ASP LEU TYR GLY ARG GLU LEU GLU VAL THR VAL GLU CYS SEQRES 16 A 251 VAL ALA ASP GLU ILE ALA ALA PHE ALA ASN LEU LEU MET SEQRES 17 A 251 GLY GLU GLY GLY ASP GLY ILE PRO ALA VAL VAL VAL ARG SEQRES 18 A 251 GLY LEU ASN VAL ALA GLY GLU GLY SER MET GLU GLU ILE SEQRES 19 A 251 TYR ARG SER GLU GLU GLU ASP VAL ILE ARG ARG CYS LEU SEQRES 20 A 251 LYS ARG CYS LEU HET CO3 A 301 4 HET MN A 302 1 HET MN A 303 1 HET NA A 304 1 HET GTP A 305 32 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HETNAM CO3 CARBONATE ION HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 CO3 C O3 2- FORMUL 3 MN 2(MN 2+) FORMUL 5 NA NA 1+ FORMUL 6 GTP C10 H16 N5 O14 P3 FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 HOH *202(H2 O) HELIX 1 AA1 ASP A 19 SER A 26 1 8 HELIX 2 AA2 SER A 40 GLU A 47 1 8 HELIX 3 AA3 GLU A 54 PHE A 56 5 3 HELIX 4 AA4 SER A 59 GLY A 70 1 12 HELIX 5 AA5 PRO A 72 GLU A 82 1 11 HELIX 6 AA6 ALA A 106 ILE A 108 5 3 HELIX 7 AA7 ASP A 124 GLY A 141 1 18 HELIX 8 AA8 CYS A 193 GLY A 207 1 15 HELIX 9 AA9 SER A 228 ILE A 232 5 5 HELIX 10 AB1 ASP A 239 LEU A 249 1 11 SHEET 1 AA1 5 GLU A 4 PRO A 7 0 SHEET 2 AA1 5 ALA A 215 ARG A 219 -1 O ARG A 219 N GLU A 4 SHEET 3 AA1 5 VAL A 35 CYS A 39 -1 N VAL A 37 O VAL A 216 SHEET 4 AA1 5 GLY A 145 ASN A 152 1 O GLY A 145 N LEU A 36 SHEET 5 AA1 5 VAL A 161 SER A 168 -1 O ILE A 165 N ILE A 148 SHEET 1 AA2 2 ILE A 50 ARG A 52 0 SHEET 2 AA2 2 SER A 117 LEU A 119 -1 O LEU A 118 N ARG A 51 SHEET 1 AA3 3 SER A 83 LEU A 88 0 SHEET 2 AA3 3 LEU A 94 ALA A 97 -1 O LYS A 96 N GLU A 84 SHEET 3 AA3 3 VAL A 102 VAL A 104 -1 O CYS A 103 N VAL A 95 SHEET 1 AA4 2 LYS A 174 ASP A 175 0 SHEET 2 AA4 2 VAL A 191 GLU A 192 -1 O GLU A 192 N LYS A 174 SSBOND 1 CYS A 155 CYS A 155 1555 5557 2.35 SSBOND 2 CYS A 244 CYS A 244 1555 5557 2.88 SSBOND 3 CYS A 244 CYS A 248 1555 5557 2.03 LINK OD2 ASP A 109 MN MN A 303 1555 1555 2.13 LINK OD1 ASP A 150 MN MN A 303 1555 1555 2.06 LINK OD2 ASP A 150 NA NA A 304 1555 1555 2.34 LINK OG1 THR A 151 MN MN A 302 1555 1555 2.29 LINK OE1 GLU A 208 MN MN A 302 1555 1555 2.18 LINK MN MN A 302 O3G GTP A 305 1555 1555 2.13 LINK MN MN A 302 O1A GTP A 305 1555 1555 2.25 LINK MN MN A 302 O2B GTP A 305 1555 1555 2.15 LINK MN MN A 302 O HOH A 407 1555 1555 2.19 LINK MN MN A 303 O2G GTP A 305 1555 1555 2.03 LINK MN MN A 303 O HOH A 418 1555 1555 2.42 LINK MN MN A 303 O HOH A 442 1555 1555 2.15 LINK MN MN A 303 O HOH A 547 1555 1555 2.32 CISPEP 1 PHE A 90 PRO A 91 0 -3.38 SITE 1 AC1 6 ARG A 185 LEU A 187 GLU A 188 VAL A 189 SITE 2 AC1 6 THR A 190 HOH A 422 SITE 1 AC2 4 THR A 151 GLU A 208 GTP A 305 HOH A 407 SITE 1 AC3 6 ASP A 109 ASP A 150 GTP A 305 HOH A 418 SITE 2 AC3 6 HOH A 442 HOH A 547 SITE 1 AC4 4 ASN A 101 CYS A 103 ASP A 150 ASN A 152 SITE 1 AC5 32 LEU A 11 PRO A 12 LEU A 13 ILE A 14 SITE 2 AC5 32 CYS A 39 SER A 40 THR A 41 VAL A 42 SITE 3 AC5 32 LYS A 45 ASP A 109 SER A 111 ASN A 112 SITE 4 AC5 32 ASP A 150 THR A 151 LEU A 182 MET A 206 SITE 5 AC5 32 GLY A 207 GLU A 208 GLY A 209 ASP A 211 SITE 6 AC5 32 GLY A 212 ILE A 213 PRO A 214 MN A 302 SITE 7 AC5 32 MN A 303 HOH A 401 HOH A 407 HOH A 442 SITE 8 AC5 32 HOH A 468 HOH A 474 HOH A 478 HOH A 547 SITE 1 AC6 4 ARG A 61 GLU A 85 VAL A 86 HOH A 413 SITE 1 AC7 4 LYS A 96 GLU A 236 ARG A 242 HOH A 419 SITE 1 AC8 6 GLU A 115 GLY A 116 ARG A 185 GLU A 186 SITE 2 AC8 6 HOH A 406 HOH A 446 CRYST1 68.544 68.544 93.243 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010725 0.00000