HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 06-APR-22 7UM9 TITLE HUMAN ALDH1A1 WITH BOUND COMPOUND CM38 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINAL DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RALDH1,ALDH-E1,ALHDII,ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER COMPND 5 A1,ALDEHYDE DEHYDROGENASE,CYTOSOLIC; COMPND 6 EC: 1.2.1.-,1.2.1.36; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A1, ALDC, ALDH1, PUMB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS INHIBITOR, OXIDOREDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.D.HURLEY REVDAT 3 08-NOV-23 7UM9 1 JRNL REVDAT 2 25-OCT-23 7UM9 1 REMARK REVDAT 1 26-APR-23 7UM9 0 JRNL AUTH V.MURALIKRISHNAN,F.FANG,T.C.GIVEN,R.PODICHETI, JRNL AUTH 2 M.CHTCHERBININE,T.X.METCALFE,S.SRIRAMKUMAR,H.M.O'HAGAN, JRNL AUTH 3 T.D.HURLEY,K.P.NEPHEW JRNL TITL A NOVEL ALDH1A1 INHIBITOR BLOCKS PLATINUM-INDUCED SENESCENCE JRNL TITL 2 AND STEMNESS IN OVARIAN CANCER. JRNL REF CANCERS (BASEL) V. 14 2022 JRNL REFN ESSN 2072-6694 JRNL PMID 35884498 JRNL DOI 10.3390/CANCERS14143437 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 44700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7900 - 4.3500 1.00 3443 161 0.1475 0.1552 REMARK 3 2 4.3400 - 3.4500 1.00 3262 153 0.1509 0.1962 REMARK 3 3 3.4500 - 3.0100 1.00 3219 151 0.1812 0.2103 REMARK 3 4 3.0100 - 2.7400 1.00 3199 149 0.1866 0.2293 REMARK 3 5 2.7400 - 2.5400 1.00 3183 150 0.1883 0.2365 REMARK 3 6 2.5400 - 2.3900 1.00 3177 148 0.1890 0.2518 REMARK 3 7 2.3900 - 2.2700 1.00 3161 148 0.1878 0.2337 REMARK 3 8 2.2700 - 2.1700 1.00 3161 148 0.1922 0.2657 REMARK 3 9 2.1700 - 2.0900 1.00 3161 149 0.2021 0.2638 REMARK 3 10 2.0900 - 2.0200 0.98 3080 143 0.2064 0.2354 REMARK 3 11 2.0200 - 1.9500 0.92 2897 136 0.2201 0.2471 REMARK 3 12 1.9500 - 1.9000 0.88 2760 130 0.2212 0.2602 REMARK 3 13 1.9000 - 1.8500 0.82 2565 120 0.2377 0.2978 REMARK 3 14 1.8500 - 1.8000 0.78 2432 114 0.2523 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.194 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.724 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4041 REMARK 3 ANGLE : 0.895 5499 REMARK 3 CHIRALITY : 0.052 604 REMARK 3 PLANARITY : 0.005 708 REMARK 3 DIHEDRAL : 10.283 574 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.5520 -33.8068 23.6970 REMARK 3 T TENSOR REMARK 3 T11: 0.3190 T22: 0.2504 REMARK 3 T33: 0.4047 T12: 0.0613 REMARK 3 T13: 0.1837 T23: 0.1660 REMARK 3 L TENSOR REMARK 3 L11: 1.5018 L22: 0.6565 REMARK 3 L33: 0.9797 L12: 0.1758 REMARK 3 L13: 0.7082 L23: 0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: -0.0163 S13: -0.3021 REMARK 3 S21: 0.1037 S22: -0.0927 S23: 0.1827 REMARK 3 S31: 0.3639 S32: 0.0885 S33: 0.0311 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2942 -23.6908 26.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.2363 REMARK 3 T33: 0.2890 T12: 0.0665 REMARK 3 T13: 0.1015 T23: 0.1209 REMARK 3 L TENSOR REMARK 3 L11: 0.8792 L22: 0.3978 REMARK 3 L33: 0.6521 L12: 0.2303 REMARK 3 L13: -0.1826 L23: -0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: -0.2456 S13: -0.3225 REMARK 3 S21: 0.1013 S22: -0.0298 S23: 0.0689 REMARK 3 S31: 0.1111 S32: 0.0838 S33: 0.1050 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4458 -17.0028 17.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1674 REMARK 3 T33: 0.1936 T12: 0.0374 REMARK 3 T13: 0.0692 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.7919 L22: 0.5234 REMARK 3 L33: 0.4393 L12: 0.0891 REMARK 3 L13: -0.2890 L23: -0.1024 REMARK 3 S TENSOR REMARK 3 S11: -0.1275 S12: -0.1089 S13: -0.1522 REMARK 3 S21: 0.0626 S22: 0.0101 S23: 0.1061 REMARK 3 S31: 0.0546 S32: 0.0120 S33: 0.0836 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1923 -11.2262 17.4924 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.2519 REMARK 3 T33: 0.3849 T12: -0.0006 REMARK 3 T13: 0.1016 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.7609 L22: 0.7417 REMARK 3 L33: 1.0788 L12: 0.0109 REMARK 3 L13: 0.2452 L23: -0.2870 REMARK 3 S TENSOR REMARK 3 S11: -0.1400 S12: -0.0899 S13: -0.0818 REMARK 3 S21: 0.0874 S22: 0.0697 S23: 0.3599 REMARK 3 S31: 0.0996 S32: -0.2099 S33: 0.0444 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1732 -22.1203 31.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.2883 REMARK 3 T33: 0.4533 T12: 0.0385 REMARK 3 T13: 0.2284 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 0.8557 L22: 0.5966 REMARK 3 L33: 0.4369 L12: -0.1718 REMARK 3 L13: 0.0068 L23: 0.1606 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1933 S13: -0.4048 REMARK 3 S21: 0.1467 S22: 0.0904 S23: -0.0076 REMARK 3 S31: 0.0970 S32: -0.0725 S33: 0.0487 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3241 -2.1265 20.0432 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.2334 REMARK 3 T33: 0.2823 T12: 0.0473 REMARK 3 T13: 0.0784 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.4432 L22: 0.7986 REMARK 3 L33: 0.9380 L12: 0.3194 REMARK 3 L13: -0.3231 L23: -0.4314 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.1215 S13: 0.0807 REMARK 3 S21: 0.2411 S22: 0.1171 S23: 0.3488 REMARK 3 S31: -0.0962 S32: -0.0827 S33: -0.0466 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0518 -2.3886 9.7073 REMARK 3 T TENSOR REMARK 3 T11: 0.2004 T22: 0.2079 REMARK 3 T33: 0.1891 T12: 0.0088 REMARK 3 T13: 0.0210 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2203 L22: 0.0504 REMARK 3 L33: 0.0218 L12: -0.0004 REMARK 3 L13: 0.0123 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: -0.0458 S13: -0.0276 REMARK 3 S21: 0.0387 S22: 0.0283 S23: 0.0009 REMARK 3 S31: 0.0386 S32: -0.0004 S33: 0.0824 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44719 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7JWU REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 100 MM BIS-TRIS, PH 6.2, REMARK 280 200 MM NACL, 5 MM YBCL3, 500 UM CM38, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.10800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 109.10800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 349 O HOH A 701 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 325 OG SER A 413 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 228 -76.59 -108.04 REMARK 500 SER A 261 -86.34 -91.79 REMARK 500 ASP A 283 106.58 -59.03 REMARK 500 GLN A 301 57.75 -94.92 REMARK 500 LYS A 470 -139.30 56.58 REMARK 500 LEU A 478 179.92 73.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 604 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 283 OD1 REMARK 620 2 ASP A 283 OD2 48.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 602 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 779 O REMARK 620 2 HOH A 818 O 85.8 REMARK 620 3 HOH A 896 O 74.7 153.4 REMARK 620 4 HOH A 905 O 166.4 107.1 91.7 REMARK 620 5 HOH A 914 O 84.5 114.9 81.5 93.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 603 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NAD A 605 O2A REMARK 620 2 NAD A 605 O1N 79.9 REMARK 620 3 HOH A 701 O 151.3 73.2 REMARK 620 4 HOH A 873 O 82.8 85.1 85.1 REMARK 620 5 HOH A 878 O 126.4 93.5 66.0 150.1 REMARK 620 6 HOH A 890 O 93.3 159.0 108.4 74.3 106.3 REMARK 620 7 HOH A 899 O 87.3 118.9 114.3 152.0 49.8 80.3 REMARK 620 N 1 2 3 4 5 6 DBREF 7UM9 A 1 501 UNP P00352 AL1A1_HUMAN 1 501 SEQRES 1 A 501 MET SER SER SER GLY THR PRO ASP LEU PRO VAL LEU LEU SEQRES 2 A 501 THR ASP LEU LYS ILE GLN TYR THR LYS ILE PHE ILE ASN SEQRES 3 A 501 ASN GLU TRP HIS ASP SER VAL SER GLY LYS LYS PHE PRO SEQRES 4 A 501 VAL PHE ASN PRO ALA THR GLU GLU GLU LEU CYS GLN VAL SEQRES 5 A 501 GLU GLU GLY ASP LYS GLU ASP VAL ASP LYS ALA VAL LYS SEQRES 6 A 501 ALA ALA ARG GLN ALA PHE GLN ILE GLY SER PRO TRP ARG SEQRES 7 A 501 THR MET ASP ALA SER GLU ARG GLY ARG LEU LEU TYR LYS SEQRES 8 A 501 LEU ALA ASP LEU ILE GLU ARG ASP ARG LEU LEU LEU ALA SEQRES 9 A 501 THR MET GLU SER MET ASN GLY GLY LYS LEU TYR SER ASN SEQRES 10 A 501 ALA TYR LEU ASN ASP LEU ALA GLY CYS ILE LYS THR LEU SEQRES 11 A 501 ARG TYR CYS ALA GLY TRP ALA ASP LYS ILE GLN GLY ARG SEQRES 12 A 501 THR ILE PRO ILE ASP GLY ASN PHE PHE THR TYR THR ARG SEQRES 13 A 501 HIS GLU PRO ILE GLY VAL CYS GLY GLN ILE ILE PRO TRP SEQRES 14 A 501 ASN PHE PRO LEU VAL MET LEU ILE TRP LYS ILE GLY PRO SEQRES 15 A 501 ALA LEU SER CYS GLY ASN THR VAL VAL VAL LYS PRO ALA SEQRES 16 A 501 GLU GLN THR PRO LEU THR ALA LEU HIS VAL ALA SER LEU SEQRES 17 A 501 ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE SEQRES 18 A 501 VAL PRO GLY TYR GLY PRO THR ALA GLY ALA ALA ILE SER SEQRES 19 A 501 SER HIS MET ASP ILE ASP LYS VAL ALA PHE THR GLY SER SEQRES 20 A 501 THR GLU VAL GLY LYS LEU ILE LYS GLU ALA ALA GLY LYS SEQRES 21 A 501 SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS SEQRES 22 A 501 SER PRO CYS ILE VAL LEU ALA ASP ALA ASP LEU ASP ASN SEQRES 23 A 501 ALA VAL GLU PHE ALA HIS HIS GLY VAL PHE TYR HIS GLN SEQRES 24 A 501 GLY GLN CYS CYS ILE ALA ALA SER ARG ILE PHE VAL GLU SEQRES 25 A 501 GLU SER ILE TYR ASP GLU PHE VAL ARG ARG SER VAL GLU SEQRES 26 A 501 ARG ALA LYS LYS TYR ILE LEU GLY ASN PRO LEU THR PRO SEQRES 27 A 501 GLY VAL THR GLN GLY PRO GLN ILE ASP LYS GLU GLN TYR SEQRES 28 A 501 ASP LYS ILE LEU ASP LEU ILE GLU SER GLY LYS LYS GLU SEQRES 29 A 501 GLY ALA LYS LEU GLU CYS GLY GLY GLY PRO TRP GLY ASN SEQRES 30 A 501 LYS GLY TYR PHE VAL GLN PRO THR VAL PHE SER ASN VAL SEQRES 31 A 501 THR ASP GLU MET ARG ILE ALA LYS GLU GLU ILE PHE GLY SEQRES 32 A 501 PRO VAL GLN GLN ILE MET LYS PHE LYS SER LEU ASP ASP SEQRES 33 A 501 VAL ILE LYS ARG ALA ASN ASN THR PHE TYR GLY LEU SER SEQRES 34 A 501 ALA GLY VAL PHE THR LYS ASP ILE ASP LYS ALA ILE THR SEQRES 35 A 501 ILE SER SER ALA LEU GLN ALA GLY THR VAL TRP VAL ASN SEQRES 36 A 501 CYS TYR GLY VAL VAL SER ALA GLN CYS PRO PHE GLY GLY SEQRES 37 A 501 PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR SEQRES 38 A 501 GLY PHE HIS GLU TYR THR GLU VAL LYS THR VAL THR VAL SEQRES 39 A 501 LYS ILE SER GLN LYS ASN SER HET NQR A 601 22 HET YB A 602 1 HET YB A 603 1 HET YB A 604 1 HET NAD A 605 44 HET CL A 606 1 HETNAM NQR (4-METHYLFURO[3,2-C]QUINOLIN-2-YL)(PIPERIDIN-1-YL) HETNAM 2 NQR METHANONE HETNAM YB YTTERBIUM (III) ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 2 NQR C18 H18 N2 O2 FORMUL 3 YB 3(YB 3+) FORMUL 6 NAD C21 H27 N7 O14 P2 FORMUL 7 CL CL 1- FORMUL 8 HOH *214(H2 O) HELIX 1 AA1 ASP A 56 PHE A 71 1 16 HELIX 2 AA2 SER A 75 MET A 80 1 6 HELIX 3 AA3 ASP A 81 ASP A 99 1 19 HELIX 4 AA4 ASP A 99 GLY A 112 1 14 HELIX 5 AA5 LEU A 114 ASN A 121 1 8 HELIX 6 AA6 ASN A 121 ALA A 137 1 17 HELIX 7 AA7 ASP A 138 ILE A 140 5 3 HELIX 8 AA8 PHE A 171 CYS A 186 1 16 HELIX 9 AA9 PRO A 199 GLY A 213 1 15 HELIX 10 AB1 THR A 228 SER A 235 1 8 HELIX 11 AB2 SER A 247 SER A 261 1 15 HELIX 12 AB3 ASP A 283 TYR A 297 1 15 HELIX 13 AB4 HIS A 298 GLN A 301 5 4 HELIX 14 AB5 GLU A 313 LYS A 328 1 16 HELIX 15 AB6 ASP A 347 GLU A 364 1 18 HELIX 16 AB7 MET A 394 GLU A 399 1 6 HELIX 17 AB8 SER A 413 ASN A 423 1 11 HELIX 18 AB9 ASP A 436 LEU A 447 1 12 HELIX 19 AC1 PHE A 469 MET A 471 5 3 HELIX 20 AC2 LEU A 478 PHE A 483 1 6 SHEET 1 AA1 2 ILE A 23 ILE A 25 0 SHEET 2 AA1 2 GLU A 28 HIS A 30 -1 O HIS A 30 N ILE A 23 SHEET 1 AA2 2 LYS A 37 PHE A 41 0 SHEET 2 AA2 2 GLU A 48 GLU A 53 -1 O LEU A 49 N VAL A 40 SHEET 1 AA3 3 THR A 144 ILE A 145 0 SHEET 2 AA3 3 PHE A 151 PRO A 159 -1 O THR A 153 N ILE A 145 SHEET 3 AA3 3 THR A 487 LYS A 495 -1 O VAL A 494 N PHE A 152 SHEET 1 AA4 6 VAL A 219 ILE A 221 0 SHEET 2 AA4 6 THR A 189 LYS A 193 1 N VAL A 192 O ASN A 220 SHEET 3 AA4 6 VAL A 162 ILE A 166 1 N GLN A 165 O LYS A 193 SHEET 4 AA4 6 LYS A 241 THR A 245 1 O LYS A 241 N GLY A 164 SHEET 5 AA4 6 ARG A 265 GLU A 269 1 O ARG A 265 N VAL A 242 SHEET 6 AA4 6 GLY A 473 ASN A 474 -1 O ASN A 474 N LEU A 268 SHEET 1 AA5 7 LYS A 367 CYS A 370 0 SHEET 2 AA5 7 THR A 385 SER A 388 -1 O SER A 388 N LYS A 367 SHEET 3 AA5 7 VAL A 405 PHE A 411 1 O GLN A 406 N PHE A 387 SHEET 4 AA5 7 ARG A 308 GLU A 312 1 N ILE A 309 O MET A 409 SHEET 5 AA5 7 PRO A 275 VAL A 278 1 N CYS A 276 O PHE A 310 SHEET 6 AA5 7 SER A 429 PHE A 433 1 O PHE A 433 N ILE A 277 SHEET 7 AA5 7 THR A 451 VAL A 454 1 O TRP A 453 N ALA A 430 SHEET 1 AA6 2 PRO A 374 TRP A 375 0 SHEET 2 AA6 2 PHE A 381 VAL A 382 -1 O PHE A 381 N TRP A 375 LINK OD1 ASP A 283 YB YB A 604 1555 1555 2.52 LINK OD2 ASP A 283 YB YB A 604 1555 1555 2.77 LINK YB YB A 602 O HOH A 779 1555 1555 2.44 LINK YB YB A 602 O HOH A 818 1555 1555 2.70 LINK YB YB A 602 O HOH A 896 1555 1555 2.28 LINK YB YB A 602 O HOH A 905 1555 1555 2.61 LINK YB YB A 602 O HOH A 914 1555 1555 2.60 LINK YB YB A 603 O2A NAD A 605 1555 1555 2.47 LINK YB YB A 603 O1N NAD A 605 1555 1555 2.32 LINK YB YB A 603 O HOH A 701 1555 1555 2.23 LINK YB YB A 603 O HOH A 873 1555 1555 2.52 LINK YB YB A 603 O HOH A 878 1555 1555 2.94 LINK YB YB A 603 O HOH A 890 1555 1555 2.52 LINK YB YB A 603 O HOH A 899 1555 1555 2.49 CRYST1 109.108 109.108 83.077 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012037 0.00000