data_7UMC # _entry.id 7UMC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UMC pdb_00007umc 10.2210/pdb7umc/pdb WWPDB D_1000264396 ? ? BMRB 31008 ? 10.13018/BMR31008 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-07-06 2 'Structure model' 1 1 2022-08-24 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_database_status 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7UMC _pdbx_database_status.recvd_initial_deposition_date 2022-04-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'DENV1 SLA RNA (DenvSLATL)' _pdbx_database_related.db_id 31008 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email varani@chem.washington.edu _pdbx_contact_author.name_first Gabriele _pdbx_contact_author.name_last Varani _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6642-7144 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sun, Y.T.' 1 ? 'Varani, G.' 2 ? 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 1210 _citation.page_last 1223 _citation.title 'Structure of the dengue virus RNA promoter.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.079197.122 _citation.pdbx_database_id_PubMed 35750488 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Y.T.' 1 0000-0001-6196-1727 primary 'Varani, G.' 2 0000-0001-6642-7144 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (70-MER)' _entity.formula_weight 22614.471 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAGUGGUUAGUCUACGUGGACCGACAAGACUUCGGUCGAAUCGGAAGGAAACUUAACGUAGUUCUAACC _entity_poly.pdbx_seq_one_letter_code_can GGAGUGGUUAGUCUACGUGGACCGACAAGACUUCGGUCGAAUCGGAAGGAAACUUAACGUAGUUCUAACC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 U n 1 6 G n 1 7 G n 1 8 U n 1 9 U n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 U n 1 15 A n 1 16 C n 1 17 G n 1 18 U n 1 19 G n 1 20 G n 1 21 A n 1 22 C n 1 23 C n 1 24 G n 1 25 A n 1 26 C n 1 27 A n 1 28 A n 1 29 G n 1 30 A n 1 31 C n 1 32 U n 1 33 U n 1 34 C n 1 35 G n 1 36 G n 1 37 U n 1 38 C n 1 39 G n 1 40 A n 1 41 A n 1 42 U n 1 43 C n 1 44 G n 1 45 G n 1 46 A n 1 47 A n 1 48 G n 1 49 G n 1 50 A n 1 51 A n 1 52 A n 1 53 C n 1 54 U n 1 55 U n 1 56 A n 1 57 A n 1 58 C n 1 59 G n 1 60 U n 1 61 A n 1 62 G n 1 63 U n 1 64 U n 1 65 C n 1 66 U n 1 67 A n 1 68 A n 1 69 C n 1 70 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 70 _pdbx_entity_src_syn.organism_scientific 'Dengue virus 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11053 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 U 9 9 9 U U A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 A 15 15 15 A A A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 U 37 37 37 U U A . n A 1 38 C 38 38 38 C C A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 A 41 41 41 A A A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 G 49 49 49 G G A . n A 1 50 A 50 50 50 A A A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 C 53 53 53 C C A . n A 1 54 U 54 54 54 U U A . n A 1 55 U 55 55 55 U U A . n A 1 56 A 56 56 56 A A A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 U 60 60 60 U U A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n A 1 67 A 67 67 67 A A A . n A 1 68 A 68 68 68 A A A . n A 1 69 C 69 69 69 C C A . n A 1 70 C 70 70 70 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UMC _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7UMC _struct.title 'DENV1 SLA RNA (DenvSLATL)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UMC _struct_keywords.text ;flavivirus, 5' UTR, SLA, viral replication, NS5 promoter, RNA ; _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7UMC _struct_ref.pdbx_db_accession 7UMC _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7UMC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 70 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7UMC _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 70 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 70 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'NMR Distance Restraints' ? 2 1 SAXS ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 6 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 6 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 6 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 69 N3 ? ? A G 7 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 69 O2 ? ? A G 7 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 69 N4 ? ? A G 7 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 68 N1 ? ? A U 8 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 68 N6 ? ? A U 8 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 9 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 9 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 10 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 10 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 11 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 11 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 11 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 13 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 13 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 13 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 61 N1 ? ? A U 14 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 61 N6 ? ? A U 14 A A 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 60 N3 ? ? A A 15 A U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 60 O4 ? ? A A 15 A U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 59 N1 ? ? A C 16 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 59 O6 ? ? A C 16 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 59 N2 ? ? A C 16 A G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 58 N3 ? ? A G 17 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 58 O2 ? ? A G 17 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 58 N4 ? ? A G 17 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 57 N1 ? ? A U 18 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 57 N6 ? ? A U 18 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 22 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 22 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 22 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 23 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 24 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 24 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 24 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 25 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 25 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 26 N4 ? ? ? 1_555 A A 41 N1 ? ? A C 26 A A 41 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A A 27 N6 ? ? ? 1_555 A A 40 N1 ? ? A A 27 A A 40 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog44 hydrog ? ? A A 28 N1 ? ? ? 1_555 A G 39 N1 ? ? A A 28 A G 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A A 28 N6 ? ? ? 1_555 A G 39 O6 ? ? A A 28 A G 39 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 29 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 30 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 30 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 31 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 31 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 31 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 32 O2 ? ? ? 1_555 A G 35 N1 ? ? A U 32 A G 35 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog55 hydrog ? ? A A 46 N1 ? ? ? 1_555 A A 56 N6 ? ? A A 46 A A 56 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 47 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 47 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 53 N3 ? ? A G 48 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 48 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 53 N4 ? ? A G 48 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 49 N2 ? ? ? 1_555 A A 52 N7 ? ? A G 49 A A 52 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog62 hydrog ? ? A G 49 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 49 A A 52 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 10 _pdbx_validate_close_contact.auth_atom_id_1 H21 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 48 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 C _pdbx_validate_close_contact.auth_seq_id_2 53 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A A 56 ? ? "O4'" A A 56 ? ? "C4'" A A 56 ? ? 105.29 109.70 -4.41 0.70 N 2 3 "C1'" A A 56 ? ? "O4'" A A 56 ? ? "C4'" A A 56 ? ? 105.10 109.70 -4.60 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 5 C A 26 ? ? 0.067 'SIDE CHAIN' 2 5 A A 41 ? ? 0.063 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 7UMC _pdbx_nmr_ensemble.conformers_calculated_total_number 400 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7UMC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM RNA (70-MER), 10 mM potassium phosphate, 95% H2O/5% D2O' '95% H2O/5% D2O' H_sample_h2o solution ? 3 '1 mM RNA (70-MER), 10 mM potassium phosphate, 100% D2O' '100% D2O' H_sample_d2o solution ? 2 '1 mM [U-2H] RNA (70-MER), 10 mM potassium phosphate, 100% D2O' '100% D2O' D_sample solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (70-MER)' 1 ? mM 'natural abundance' 1 'potassium phosphate' 10 ? mM 'natural abundance' 3 'RNA (70-MER)' 1 ? mM 'natural abundance' 3 'potassium phosphate' 10 ? mM 'natural abundance' 2 'RNA (70-MER)' 1 ? mM '[U-2H]' 2 'potassium phosphate' 10 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 2 isotropic 2 1 1 '2D 1H-1H TOCSY' 2 isotropic 3 1 2 '2D 1H-1H NOESY' 2 isotropic 4 1 2 '2D 1H-1H TOCSY' 2 isotropic 5 1 3 '2D 1H-1H NOESY' 2 isotropic # _pdbx_nmr_refine.entry_id 7UMC _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 4 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 5 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7UMC 'double helix' 7UMC 'a-form double helix' 7UMC tetraloop 7UMC 'mismatched base pair' 7UMC 'internal loop' 7UMC 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 6 1_555 A C 70 1_555 -0.169 0.116 -0.043 1.736 -5.567 -1.015 1 A_G6:C70_A A 6 ? A 70 ? 19 1 1 A G 7 1_555 A C 69 1_555 -0.286 -0.091 0.009 -2.053 -14.293 4.974 2 A_G7:C69_A A 7 ? A 69 ? 19 1 1 A U 8 1_555 A A 68 1_555 0.140 -0.184 0.036 -1.104 -12.397 2.965 3 A_U8:A68_A A 8 ? A 68 ? 20 1 1 A U 9 1_555 A A 67 1_555 0.111 -0.193 -0.052 -1.242 -6.170 1.678 4 A_U9:A67_A A 9 ? A 67 ? 20 1 1 A A 10 1_555 A U 66 1_555 0.175 -0.116 -0.057 -1.368 -3.651 1.596 5 A_A10:U66_A A 10 ? A 66 ? 20 1 1 A G 11 1_555 A C 65 1_555 -0.098 -0.058 0.008 -0.681 -7.252 4.811 6 A_G11:C65_A A 11 ? A 65 ? 19 1 1 A C 13 1_555 A G 62 1_555 0.618 0.061 -0.686 0.746 -0.780 -8.815 7 A_C13:G62_A A 13 ? A 62 ? 19 1 1 A U 14 1_555 A A 61 1_555 0.197 -0.149 -0.144 -0.484 -9.548 -9.433 8 A_U14:A61_A A 14 ? A 61 ? 20 1 1 A A 15 1_555 A U 60 1_555 0.035 -0.170 -0.064 -2.156 -10.107 -7.974 9 A_A15:U60_A A 15 ? A 60 ? 20 1 1 A C 16 1_555 A G 59 1_555 0.548 -0.129 0.003 2.108 -14.115 -0.838 10 A_C16:G59_A A 16 ? A 59 ? 19 1 1 A G 17 1_555 A C 58 1_555 -0.600 -0.217 0.213 0.464 -15.316 0.670 11 A_G17:C58_A A 17 ? A 58 ? 19 1 1 A U 18 1_555 A A 57 1_555 -0.323 -0.023 0.295 -0.349 -12.319 -3.241 12 A_U18:A57_A A 18 ? A 57 ? 20 1 1 A G 35 1_555 A U 32 1_555 0.289 2.920 1.349 44.125 16.755 118.334 13 A_G35:U32_A A 35 ? A 32 ? ? 6 1 A G 36 1_555 A C 31 1_555 -1.023 -0.325 -0.056 -0.348 -2.914 -0.536 14 A_G36:C31_A A 36 ? A 31 ? 19 1 1 A U 37 1_555 A A 30 1_555 -0.081 -0.154 -0.096 1.706 -8.032 -7.622 15 A_U37:A30_A A 37 ? A 30 ? 20 1 1 A C 38 1_555 A G 29 1_555 -0.123 0.201 -0.145 0.029 -6.619 -4.644 16 A_C38:G29_A A 38 ? A 29 ? 19 1 1 A G 39 1_555 A A 28 1_555 -0.523 1.250 -0.814 -7.365 -6.864 -8.359 17 A_G39:A28_A A 39 ? A 28 ? 8 1 1 A A 40 1_555 A A 27 1_555 1.385 1.124 -0.662 -7.250 4.154 -9.866 18 A_A40:A27_A A 40 ? A 27 ? ? 1 1 A A 41 1_555 A C 26 1_555 1.709 0.294 -0.492 9.364 16.378 -13.255 19 A_A41:C26_A A 41 ? A 26 ? ? ? 1 A U 42 1_555 A A 25 1_555 0.114 -0.252 -0.008 1.251 -9.935 -6.359 20 A_U42:A25_A A 42 ? A 25 ? 20 1 1 A C 43 1_555 A G 24 1_555 -0.003 -0.121 -0.003 4.329 -13.355 2.916 21 A_C43:G24_A A 43 ? A 24 ? 19 1 1 A G 44 1_555 A C 23 1_555 -0.606 -0.225 -0.087 -2.009 -13.396 4.086 22 A_G44:C23_A A 44 ? A 23 ? 19 1 1 A G 45 1_555 A C 22 1_555 -0.453 0.155 -0.216 -10.172 -5.767 -4.619 23 A_G45:C22_A A 45 ? A 22 ? 19 1 1 A A 46 1_555 A A 56 1_555 3.976 0.175 2.180 -7.803 -7.045 -22.954 24 A_A46:A56_A A 46 ? A 56 ? ? ? 1 A A 47 1_555 A U 54 1_555 -0.191 0.036 0.319 10.590 -25.332 3.088 25 A_A47:U54_A A 47 ? A 54 ? 20 1 1 A G 48 1_555 A C 53 1_555 -0.720 -0.295 -0.015 1.896 -8.260 4.219 26 A_G48:C53_A A 48 ? A 53 ? 19 1 1 A G 49 1_555 A A 52 1_555 6.853 -4.328 1.009 28.130 13.860 -3.554 27 A_G49:A52_A A 49 ? A 52 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 6 1_555 A C 70 1_555 A G 7 1_555 A C 69 1_555 0.200 -1.778 3.298 -1.083 7.914 31.374 -4.510 -0.540 2.771 14.346 1.963 32.351 1 AA_G6G7:C69C70_AA A 6 ? A 70 ? A 7 ? A 69 ? 1 A G 7 1_555 A C 69 1_555 A U 8 1_555 A A 68 1_555 -0.076 -1.447 3.283 -0.611 4.900 33.870 -3.211 0.035 3.051 8.355 1.041 34.217 2 AA_G7U8:A68C69_AA A 7 ? A 69 ? A 8 ? A 68 ? 1 A U 8 1_555 A A 68 1_555 A U 9 1_555 A A 67 1_555 -0.012 -1.485 3.293 0.877 8.001 31.461 -3.995 0.168 2.838 14.461 -1.585 32.449 3 AA_U8U9:A67A68_AA A 8 ? A 68 ? A 9 ? A 67 ? 1 A U 9 1_555 A A 67 1_555 A A 10 1_555 A U 66 1_555 0.006 -1.471 3.329 0.668 8.796 30.657 -4.212 0.106 2.809 16.219 -1.232 31.871 4 AA_U9A10:U66A67_AA A 9 ? A 67 ? A 10 ? A 66 ? 1 A A 10 1_555 A U 66 1_555 A G 11 1_555 A C 65 1_555 0.101 -1.615 3.292 -0.396 10.122 28.182 -5.067 -0.272 2.569 19.989 0.781 29.913 5 AA_A10G11:C65U66_AA A 10 ? A 66 ? A 11 ? A 65 ? 1 A C 13 1_555 A G 62 1_555 A U 14 1_555 A A 61 1_555 -0.047 -1.667 3.536 -0.834 1.368 30.728 -3.428 -0.086 3.461 2.579 1.572 30.769 6 AA_C13U14:A61G62_AA A 13 ? A 62 ? A 14 ? A 61 ? 1 A U 14 1_555 A A 61 1_555 A A 15 1_555 A U 60 1_555 0.008 -1.553 3.346 -0.417 5.042 32.043 -3.655 -0.088 3.072 9.063 0.750 32.429 7 AA_U14A15:U60A61_AA A 14 ? A 61 ? A 15 ? A 60 ? 1 A A 15 1_555 A U 60 1_555 A C 16 1_555 A G 59 1_555 0.205 -1.549 3.183 -0.284 4.236 33.765 -3.286 -0.393 2.971 7.257 0.487 34.023 8 AA_A15C16:G59U60_AA A 15 ? A 60 ? A 16 ? A 59 ? 1 A C 16 1_555 A G 59 1_555 A G 17 1_555 A C 58 1_555 0.082 -1.769 3.163 -2.069 9.759 26.478 -5.602 -0.587 2.361 20.408 4.328 28.264 9 AA_C16G17:C58G59_AA A 16 ? A 59 ? A 17 ? A 58 ? 1 A G 17 1_555 A C 58 1_555 A U 18 1_555 A A 57 1_555 -0.165 -1.627 3.345 -2.248 5.255 32.386 -3.761 -0.087 3.055 9.331 3.991 32.873 10 AA_G17U18:A57C58_AA A 17 ? A 58 ? A 18 ? A 57 ? 1 A G 35 1_555 A U 32 1_555 A G 36 1_555 A C 31 1_555 2.785 -0.037 3.746 21.639 -2.235 97.290 0.020 -1.404 4.150 -1.475 -14.283 99.089 11 AA_G35G36:C31U32_AA A 35 ? A 32 ? A 36 ? A 31 ? 1 A G 36 1_555 A C 31 1_555 A U 37 1_555 A A 30 1_555 -0.292 -1.461 3.261 -0.823 10.208 35.496 -3.604 0.357 2.756 16.328 1.316 36.898 12 AA_G36U37:A30C31_AA A 36 ? A 31 ? A 37 ? A 30 ? 1 A U 37 1_555 A A 30 1_555 A C 38 1_555 A G 29 1_555 0.175 -1.649 3.298 0.857 7.828 33.594 -3.941 -0.168 2.857 13.317 -1.458 34.479 13 AA_U37C38:G29A30_AA A 37 ? A 30 ? A 38 ? A 29 ? 1 A C 38 1_555 A G 29 1_555 A G 39 1_555 A A 28 1_555 -0.069 -1.842 3.452 3.746 12.828 29.483 -5.455 0.750 2.434 23.730 -6.929 32.309 14 AA_C38G39:A28G29_AA A 38 ? A 29 ? A 39 ? A 28 ? 1 A G 39 1_555 A A 28 1_555 A A 40 1_555 A A 27 1_555 -0.041 -1.466 3.456 -0.476 8.857 34.767 -3.657 -0.002 3.005 14.532 0.781 35.846 15 AA_G39A40:A27A28_AA A 39 ? A 28 ? A 40 ? A 27 ? 1 A A 40 1_555 A A 27 1_555 A A 41 1_555 A C 26 1_555 -0.081 -1.392 3.164 1.262 14.356 26.828 -5.149 0.373 2.152 28.480 -2.503 30.390 16 AA_A40A41:C26A27_AA A 40 ? A 27 ? A 41 ? A 26 ? 1 A A 41 1_555 A C 26 1_555 A U 42 1_555 A A 25 1_555 -0.239 -1.368 4.145 -6.733 -15.415 30.025 1.020 -1.052 4.285 -27.233 11.896 34.321 17 AA_A41U42:A25C26_AA A 41 ? A 26 ? A 42 ? A 25 ? 1 A U 42 1_555 A A 25 1_555 A C 43 1_555 A G 24 1_555 0.587 -1.544 3.227 1.199 -0.041 31.860 -2.804 -0.853 3.248 -0.074 -2.183 31.882 18 AA_U42C43:G24A25_AA A 42 ? A 25 ? A 43 ? A 24 ? 1 A C 43 1_555 A G 24 1_555 A G 44 1_555 A C 23 1_555 0.232 -1.710 3.261 0.064 7.794 29.299 -4.737 -0.432 2.726 15.076 -0.124 30.296 19 AA_C43G44:C23G24_AA A 43 ? A 24 ? A 44 ? A 23 ? 1 A G 44 1_555 A C 23 1_555 A G 45 1_555 A C 22 1_555 -0.074 -1.823 3.471 0.856 3.097 35.566 -3.437 0.248 3.303 5.057 -1.398 35.706 20 AA_G44G45:C22C23_AA A 44 ? A 23 ? A 45 ? A 22 ? 1 A G 45 1_555 A C 22 1_555 A A 46 1_555 A A 56 1_555 -2.573 -2.492 3.169 -9.930 18.841 38.808 -4.922 2.585 2.339 26.105 13.758 44.070 21 AA_G45A46:A56C22_AA A 45 ? A 22 ? A 46 ? A 56 ? 1 A A 46 1_555 A A 56 1_555 A A 47 1_555 A U 54 1_555 1.001 -2.442 4.627 -16.353 34.807 21.380 -6.537 -2.874 0.014 56.110 26.362 43.803 22 AA_A46A47:U54A56_AA A 46 ? A 56 ? A 47 ? A 54 ? 1 A A 47 1_555 A U 54 1_555 A G 48 1_555 A C 53 1_555 -0.412 -1.778 3.060 -6.598 17.121 30.133 -5.025 -0.120 1.863 29.723 11.454 35.169 23 AA_A47G48:C53U54_AA A 47 ? A 54 ? A 48 ? A 53 ? 1 A G 48 1_555 A C 53 1_555 A G 49 1_555 A A 52 1_555 -0.518 -0.685 2.247 0.415 18.032 58.621 -1.243 0.523 1.977 17.958 -0.413 61.097 24 AA_G48G49:A52C53_AA A 48 ? A 53 ? A 49 ? A 52 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 600 ? 2 'AVANCE III' ? Bruker 800 ? # _atom_sites.entry_id 7UMC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_