HEADER REPLICATION 09-APR-22 7UN7 TITLE DNA POLYMERASE LAMBDA IN COMPLEX WITH A 1NT MICROHOMOLOGY SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*T)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*TP*AP*CP*TP*G)-3'); COMPND 15 CHAIN: U; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'); COMPND 19 CHAIN: P; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 23 CHAIN: D; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 MOL_ID: 5; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606 KEYWDS REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN REVDAT 2 25-OCT-23 7UN7 1 REMARK REVDAT 1 29-MAR-23 7UN7 0 JRNL AUTH G.CHANDRAMOULY,J.JAMSEN,N.BORISONNIK,M.TYAGI,M.L.CALBERT, JRNL AUTH 2 T.TREDINNICK,A.Y.OZDEMIR,T.KENT,E.V.DEMIDOVA,S.ARORA, JRNL AUTH 3 S.H.WILSON,R.T.POMERANTZ JRNL TITL POL LAMBDA PROMOTES MICROHOMOLOGY-MEDIATED END-JOINING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 107 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 36536104 JRNL DOI 10.1038/S41594-022-00895-4 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.5 REMARK 3 NUMBER OF REFLECTIONS : 25392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7600 - 4.2400 1.00 3620 188 0.1935 0.1980 REMARK 3 2 4.2400 - 3.3700 1.00 3466 172 0.1809 0.2157 REMARK 3 3 3.3700 - 2.9400 0.99 3400 178 0.2248 0.2560 REMARK 3 4 2.9400 - 2.6700 0.93 3166 164 0.2639 0.2961 REMARK 3 5 2.6700 - 2.4800 0.82 2754 139 0.2702 0.2964 REMARK 3 6 2.4800 - 2.3400 0.74 2513 111 0.2656 0.3041 REMARK 3 7 2.3400 - 2.2200 0.62 2090 116 0.2704 0.3056 REMARK 3 8 2.2200 - 2.1200 0.52 1770 93 0.2966 0.3893 REMARK 3 9 2.1200 - 2.0400 0.41 1388 64 0.3635 0.4756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 252:575 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.507 -10.656 15.050 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.2231 REMARK 3 T33: 0.2132 T12: 0.0368 REMARK 3 T13: -0.0588 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 2.3163 L22: 1.5060 REMARK 3 L33: 1.0837 L12: 0.1235 REMARK 3 L13: -0.6143 L23: 0.1467 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.4425 S13: 0.0600 REMARK 3 S21: 0.2675 S22: 0.0654 S23: -0.1397 REMARK 3 S31: -0.0044 S32: 0.1314 S33: 0.0201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN T AND RESID 1:7 ) OR ( CHAIN U AND RESID REMARK 3 7:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.835 -15.427 17.438 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.2226 REMARK 3 T33: 0.2560 T12: 0.0068 REMARK 3 T13: 0.0261 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.6418 L22: 0.0117 REMARK 3 L33: 0.0903 L12: -0.0031 REMARK 3 L13: 0.0096 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.5413 S13: -0.0948 REMARK 3 S21: 0.1275 S22: -0.0046 S23: 0.4555 REMARK 3 S31: 0.1179 S32: -0.1625 S33: 0.0214 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN P AND RESID 1:6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.057 -14.649 8.709 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.2223 REMARK 3 T33: 0.2093 T12: -0.0041 REMARK 3 T13: -0.0284 T23: -0.0744 REMARK 3 L TENSOR REMARK 3 L11: 0.0740 L22: 0.0336 REMARK 3 L33: 0.0496 L12: -0.0067 REMARK 3 L13: 0.0526 L23: -0.0355 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: -0.2484 S13: 0.0745 REMARK 3 S21: -0.0997 S22: 0.0594 S23: -0.1046 REMARK 3 S31: -0.1417 S32: -0.0364 S33: 0.0095 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.318 -28.474 29.644 REMARK 3 T TENSOR REMARK 3 T11: 0.6262 T22: 0.6100 REMARK 3 T33: 0.2690 T12: 0.0230 REMARK 3 T13: 0.1179 T23: 0.1241 REMARK 3 L TENSOR REMARK 3 L11: 0.2044 L22: 0.0858 REMARK 3 L33: 0.2011 L12: 0.1268 REMARK 3 L13: -0.0262 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: 0.4419 S12: -0.4448 S13: -0.0690 REMARK 3 S21: 0.1237 S22: 0.1241 S23: 0.1955 REMARK 3 S31: 0.1498 S32: 0.0815 S33: 0.0351 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 52.113 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 9.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.06750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.09650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.38700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.09650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.06750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.38700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, U, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 465 ASN A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 253 CG OD1 ND2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 HIS A 255 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LEU A 286 CG CD1 CD2 REMARK 470 LYS A 287 CB CG CD CE NZ REMARK 470 SER A 288 OG REMARK 470 PHE A 289 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 TYR A 296 OH REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 SER A 301 OG REMARK 470 ILE A 302 CD1 REMARK 470 ILE A 305 CD1 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CG1 CG2 CD1 REMARK 470 ILE A 316 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LEU A 325 CD1 CD2 REMARK 470 ILE A 328 CD1 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 SER A 445 OG REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 CG OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 THR A 534 OG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 ASN A 539 CG OD1 ND2 REMARK 470 THR A 540 OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 NH1 NH2 REMARK 470 GLU A 569 OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 DT T 7 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT T 7 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 7 C7 C6 REMARK 470 DT U 7 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DT U 7 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT U 7 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 390 O HOH A 701 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 385 O3 GOL A 602 4545 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -146.19 -111.60 REMARK 500 ARG A 438 -14.80 -144.86 REMARK 500 ASN A 539 -157.78 -104.09 REMARK 500 HIS A 541 38.65 -76.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 99.7 REMARK 620 3 ALA A 344 O 89.8 89.8 REMARK 620 4 DA P 5 OP1 164.2 96.0 91.5 REMARK 620 5 DA P 5 OP1 163.0 96.5 95.1 3.7 REMARK 620 6 HOH P 105 O 74.6 172.8 85.7 89.7 89.5 REMARK 620 7 HOH P 114 O 91.4 100.5 169.2 84.5 80.8 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 O REMARK 620 2 ASP A 427 OD1 65.2 REMARK 620 3 ASP A 429 OD2 83.0 103.7 REMARK 620 4 TTP A 601 O1A 147.4 83.2 97.5 REMARK 620 5 TTP A 601 O1B 142.6 148.6 96.0 70.0 REMARK 620 6 TTP A 601 O1G 104.5 87.7 168.4 81.0 72.7 REMARK 620 7 HOH A 711 O 63.9 124.4 91.1 148.2 78.7 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD2 43.5 REMARK 620 3 ASP A 429 OD1 83.5 124.2 REMARK 620 4 ASP A 490 OD2 133.7 110.5 93.1 REMARK 620 5 TTP A 601 O1A 65.5 86.8 84.1 160.3 REMARK 620 6 HOH A 714 O 86.6 52.7 161.7 104.8 77.8 REMARK 620 7 HOH A 748 O 69.0 60.1 89.7 64.8 134.5 101.0 REMARK 620 N 1 2 3 4 5 6 DBREF 7UN7 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7UN7 T 1 7 PDB 7UN7 7UN7 1 7 DBREF 7UN7 U 7 11 PDB 7UN7 7UN7 7 11 DBREF 7UN7 P 1 6 PDB 7UN7 7UN7 1 6 DBREF 7UN7 D 1 4 PDB 7UN7 7UN7 1 4 SEQADV 7UN7 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7UN7 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7UN7 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7UN7 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7UN7 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7UN7 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7UN7 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7UN7 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7UN7 ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 7 DC DG DG DC DA DG DT SEQRES 1 U 5 DT DA DC DT DG SEQRES 1 P 6 DC DA DG DT DA DC SEQRES 1 D 4 DG DC DC DG HET TTP A 601 29 HET GOL A 602 6 HET NA A 603 1 HET NA A 604 1 HET CA A 605 1 HET CA A 606 1 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 TTP C10 H17 N2 O14 P3 FORMUL 7 GOL C3 H8 O3 FORMUL 8 NA 2(NA 1+) FORMUL 10 CA 2(CA 2+) FORMUL 12 EDO 4(C2 H6 O2) FORMUL 16 HOH *150(H2 O) HELIX 1 AA1 ASN A 253 GLY A 271 1 19 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 GLU A 385 1 7 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 430 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N ASP A 459 O VAL A 476 SHEET 1 AA3 3 SER A 526 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 VAL A 550 -1 O ARG A 549 N THR A 534 LINK O SER A 339 NA NA A 603 1555 1555 2.30 LINK O ILE A 341 NA NA A 603 1555 1555 2.39 LINK O ALA A 344 NA NA A 603 1555 1555 2.23 LINK O ASP A 427 CA CA A 605 1555 1555 2.82 LINK OD1 ASP A 427 CA CA A 605 1555 1555 2.23 LINK OD1 ASP A 427 CA CA A 606 1555 1555 2.79 LINK OD2 ASP A 427 CA CA A 606 1555 1555 3.09 LINK OD2 ASP A 429 CA CA A 605 1555 1555 2.21 LINK OD1 ASP A 429 CA CA A 606 1555 1555 2.21 LINK OD2 ASP A 490 CA CA A 606 1555 1555 2.50 LINK O1A TTP A 601 CA CA A 605 1555 1555 2.24 LINK O1B TTP A 601 CA CA A 605 1555 1555 2.23 LINK O1G TTP A 601 CA CA A 605 1555 1555 2.25 LINK O1A TTP A 601 CA CA A 606 1555 1555 2.70 LINK NA NA A 603 OP1A DA P 5 1555 1555 2.28 LINK NA NA A 603 OP1B DA P 5 1555 1555 2.45 LINK NA NA A 603 O HOH P 105 1555 1555 2.85 LINK NA NA A 603 O HOH P 114 1555 1555 2.50 LINK CA CA A 605 O HOH A 711 1555 1555 2.29 LINK CA CA A 606 O HOH A 714 1555 1555 2.45 LINK CA CA A 606 O HOH A 748 1555 1555 2.81 CISPEP 1 GLY A 508 SER A 509 0 2.23 CRYST1 56.135 62.774 140.193 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017814 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007133 0.00000