HEADER RIBOSOME 11-APR-22 7UNQ TITLE COMPACT IF2-GDP BOUND TO THE PSEUDOMONAS AERUGINOSA 70S RIBOSOME TITLE 2 INITIATION COMPLEX, FROM FOCUSED CLASSIFICATION AND REFINEMENT (I-A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-2; COMPND 3 CHAIN: x; COMPND 4 FRAGMENT: N2 SUB-DOMAIN OF IF2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: INFB, PA4744; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS INITIATION FACTOR 2, 70S RIBOSOME, CRYO-EM, TRANSLATION INITIATION, KEYWDS 2 INITIATOR TRNA, CONFORMATIONAL CHANGES, RIBOSOME EXPDTA ELECTRON MICROSCOPY AUTHOR R.S.BASU,M.B.SHERMAN,M.G.GAGNON REVDAT 2 14-FEB-24 7UNQ 1 REMARK REVDAT 1 22-JUN-22 7UNQ 0 JRNL AUTH R.S.BASU,M.B.SHERMAN,M.G.GAGNON JRNL TITL COMPACT IF2 ALLOWS INITIATOR TRNA ACCOMMODATION INTO THE P JRNL TITL 2 SITE AND GATES THE RIBOSOME TO ELONGATION JRNL REF NAT COMMUN V. 13 3388 2022 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-022-31129-2 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, UCSF REMARK 3 CHIMERA, PHENIX, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3JCJ REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 21480 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7UNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264474. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPACT IF2-GDP BOUND TO THE REMARK 245 PSEUDOMONAS AERUGINOSA 70S REMARK 245 RIBOSOME INITIATION COMPLEX, REMARK 245 FROM FOCUSED CLASSIFICATION AND REMARK 245 REFINEMENT (I-A) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.60 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 8056 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2100.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3100.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: x REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET x 1 REMARK 465 THR x 2 REMARK 465 GLN x 3 REMARK 465 VAL x 4 REMARK 465 THR x 5 REMARK 465 VAL x 6 REMARK 465 LYS x 7 REMARK 465 GLU x 8 REMARK 465 LEU x 9 REMARK 465 ALA x 10 REMARK 465 GLN x 11 REMARK 465 VAL x 12 REMARK 465 VAL x 13 REMARK 465 ASP x 14 REMARK 465 THR x 15 REMARK 465 PRO x 16 REMARK 465 VAL x 17 REMARK 465 GLU x 18 REMARK 465 ARG x 19 REMARK 465 LEU x 20 REMARK 465 LEU x 21 REMARK 465 LEU x 22 REMARK 465 GLN x 23 REMARK 465 MET x 24 REMARK 465 ARG x 25 REMARK 465 ASP x 26 REMARK 465 ALA x 27 REMARK 465 GLY x 28 REMARK 465 LEU x 29 REMARK 465 PRO x 30 REMARK 465 HIS x 31 REMARK 465 THR x 32 REMARK 465 SER x 33 REMARK 465 ALA x 34 REMARK 465 GLU x 35 REMARK 465 GLN x 36 REMARK 465 VAL x 37 REMARK 465 VAL x 38 REMARK 465 THR x 39 REMARK 465 ASP x 40 REMARK 465 SER x 41 REMARK 465 GLU x 42 REMARK 465 LYS x 43 REMARK 465 GLN x 44 REMARK 465 ALA x 45 REMARK 465 LEU x 46 REMARK 465 LEU x 47 REMARK 465 THR x 48 REMARK 465 HIS x 49 REMARK 465 LEU x 50 REMARK 465 LYS x 51 REMARK 465 GLY x 52 REMARK 465 SER x 53 REMARK 465 HIS x 54 REMARK 465 GLY x 55 REMARK 465 ASP x 56 REMARK 465 ARG x 57 REMARK 465 ALA x 58 REMARK 465 SER x 59 REMARK 465 GLU x 60 REMARK 465 PRO x 61 REMARK 465 ARG x 62 REMARK 465 LYS x 63 REMARK 465 ILE x 64 REMARK 465 THR x 65 REMARK 465 LEU x 66 REMARK 465 GLN x 67 REMARK 465 ARG x 68 REMARK 465 LYS x 69 REMARK 465 THR x 70 REMARK 465 THR x 71 REMARK 465 THR x 72 REMARK 465 THR x 73 REMARK 465 LEU x 74 REMARK 465 LYS x 75 REMARK 465 VAL x 76 REMARK 465 GLY x 77 REMARK 465 GLY x 78 REMARK 465 SER x 79 REMARK 465 LYS x 80 REMARK 465 THR x 81 REMARK 465 VAL x 82 REMARK 465 SER x 83 REMARK 465 VAL x 84 REMARK 465 GLU x 85 REMARK 465 VAL x 86 REMARK 465 ARG x 87 REMARK 465 LYS x 88 REMARK 465 LYS x 89 REMARK 465 LYS x 90 REMARK 465 THR x 91 REMARK 465 TYR x 92 REMARK 465 VAL x 93 REMARK 465 LYS x 94 REMARK 465 ARG x 95 REMARK 465 SER x 96 REMARK 465 PRO x 97 REMARK 465 ASP x 98 REMARK 465 GLU x 99 REMARK 465 ILE x 100 REMARK 465 GLU x 101 REMARK 465 ALA x 102 REMARK 465 GLU x 103 REMARK 465 ARG x 104 REMARK 465 GLN x 105 REMARK 465 ARG x 106 REMARK 465 GLU x 107 REMARK 465 LEU x 108 REMARK 465 GLU x 109 REMARK 465 GLU x 110 REMARK 465 GLN x 111 REMARK 465 ARG x 112 REMARK 465 ALA x 113 REMARK 465 ALA x 114 REMARK 465 GLU x 115 REMARK 465 GLU x 116 REMARK 465 ALA x 117 REMARK 465 GLU x 118 REMARK 465 ARG x 119 REMARK 465 LEU x 120 REMARK 465 LYS x 121 REMARK 465 ALA x 122 REMARK 465 GLU x 123 REMARK 465 GLU x 124 REMARK 465 ALA x 125 REMARK 465 ALA x 126 REMARK 465 ALA x 127 REMARK 465 ARG x 128 REMARK 465 GLN x 129 REMARK 465 ARG x 130 REMARK 465 ALA x 131 REMARK 465 GLU x 132 REMARK 465 GLU x 133 REMARK 465 GLU x 134 REMARK 465 ALA x 135 REMARK 465 ARG x 136 REMARK 465 LYS x 137 REMARK 465 ALA x 138 REMARK 465 GLU x 139 REMARK 465 GLU x 140 REMARK 465 ALA x 141 REMARK 465 ALA x 142 REMARK 465 ARG x 143 REMARK 465 ALA x 144 REMARK 465 LYS x 145 REMARK 465 ALA x 146 REMARK 465 ALA x 147 REMARK 465 GLN x 148 REMARK 465 GLU x 149 REMARK 465 ALA x 150 REMARK 465 ALA x 151 REMARK 465 ALA x 152 REMARK 465 THR x 153 REMARK 465 ALA x 154 REMARK 465 GLY x 155 REMARK 465 ALA x 156 REMARK 465 GLU x 157 REMARK 465 PRO x 158 REMARK 465 ALA x 159 REMARK 465 VAL x 160 REMARK 465 VAL x 161 REMARK 465 ALA x 162 REMARK 465 ASP x 163 REMARK 465 VAL x 164 REMARK 465 ALA x 165 REMARK 465 VAL x 166 REMARK 465 ALA x 167 REMARK 465 GLU x 168 REMARK 465 PRO x 169 REMARK 465 VAL x 170 REMARK 465 ALA x 171 REMARK 465 LYS x 172 REMARK 465 PRO x 173 REMARK 465 ALA x 174 REMARK 465 ALA x 175 REMARK 465 VAL x 176 REMARK 465 GLU x 177 REMARK 465 GLU x 178 REMARK 465 ARG x 179 REMARK 465 LYS x 180 REMARK 465 LYS x 181 REMARK 465 GLU x 182 REMARK 465 GLU x 183 REMARK 465 PRO x 184 REMARK 465 ARG x 185 REMARK 465 ARG x 186 REMARK 465 VAL x 187 REMARK 465 PRO x 188 REMARK 465 LYS x 189 REMARK 465 ARG x 190 REMARK 465 ASP x 191 REMARK 465 GLU x 192 REMARK 465 ASP x 193 REMARK 465 ASP x 194 REMARK 465 ASP x 195 REMARK 465 ARG x 196 REMARK 465 ARG x 197 REMARK 465 ASP x 198 REMARK 465 ARG x 199 REMARK 465 LYS x 200 REMARK 465 HIS x 201 REMARK 465 THR x 202 REMARK 465 GLN x 203 REMARK 465 HIS x 204 REMARK 465 ARG x 205 REMARK 465 PRO x 206 REMARK 465 SER x 207 REMARK 465 VAL x 208 REMARK 465 LYS x 209 REMARK 465 GLU x 210 REMARK 465 LYS x 211 REMARK 465 GLU x 212 REMARK 465 LYS x 213 REMARK 465 VAL x 214 REMARK 465 PRO x 215 REMARK 465 ALA x 216 REMARK 465 PRO x 217 REMARK 465 ARG x 218 REMARK 465 VAL x 219 REMARK 465 ALA x 220 REMARK 465 PRO x 221 REMARK 465 ARG x 222 REMARK 465 SER x 223 REMARK 465 THR x 224 REMARK 465 ASP x 225 REMARK 465 GLU x 226 REMARK 465 GLU x 227 REMARK 465 SER x 228 REMARK 465 ASP x 229 REMARK 465 GLY x 230 REMARK 465 TYR x 231 REMARK 465 ARG x 232 REMARK 465 ARG x 233 REMARK 465 GLY x 234 REMARK 465 GLY x 235 REMARK 465 ARG x 236 REMARK 465 GLY x 237 REMARK 465 GLY x 238 REMARK 465 LYS x 239 REMARK 465 SER x 240 REMARK 465 LYS x 241 REMARK 465 LEU x 242 REMARK 465 LYS x 243 REMARK 465 LYS x 244 REMARK 465 ARG x 245 REMARK 465 ASN x 246 REMARK 465 GLN x 247 REMARK 465 HIS x 248 REMARK 465 GLY x 249 REMARK 465 PHE x 250 REMARK 465 GLN x 251 REMARK 465 ASN x 252 REMARK 465 PRO x 253 REMARK 465 THR x 254 REMARK 465 GLY x 255 REMARK 465 PRO x 256 REMARK 465 ILE x 257 REMARK 465 VAL x 258 REMARK 465 ARG x 259 REMARK 465 GLU x 260 REMARK 465 VAL x 261 REMARK 465 ASN x 262 REMARK 465 ILE x 263 REMARK 465 GLY x 264 REMARK 465 GLU x 265 REMARK 465 THR x 266 REMARK 465 ILE x 267 REMARK 465 THR x 268 REMARK 465 VAL x 269 REMARK 465 ALA x 270 REMARK 465 GLU x 271 REMARK 465 LEU x 272 REMARK 465 ALA x 273 REMARK 465 ALA x 274 REMARK 465 GLN x 275 REMARK 465 MET x 276 REMARK 465 SER x 277 REMARK 465 VAL x 278 REMARK 465 LYS x 279 REMARK 465 GLY x 280 REMARK 465 ALA x 281 REMARK 465 GLU x 282 REMARK 465 VAL x 283 REMARK 465 VAL x 284 REMARK 465 LYS x 285 REMARK 465 PHE x 286 REMARK 465 MET x 287 REMARK 465 PHE x 288 REMARK 465 LYS x 289 REMARK 465 MET x 290 REMARK 465 GLY x 291 REMARK 465 SER x 292 REMARK 465 PRO x 293 REMARK 465 VAL x 294 REMARK 465 THR x 295 REMARK 465 ILE x 296 REMARK 465 ASN x 297 REMARK 465 GLN x 298 REMARK 465 VAL x 299 REMARK 465 LEU x 300 REMARK 465 ASP x 301 REMARK 465 GLN x 302 REMARK 465 GLU x 303 REMARK 465 THR x 304 REMARK 465 ALA x 305 REMARK 465 GLN x 306 REMARK 465 LEU x 307 REMARK 465 VAL x 308 REMARK 465 ALA x 309 REMARK 465 GLU x 310 REMARK 465 GLU x 311 REMARK 465 LEU x 312 REMARK 465 GLY x 313 REMARK 465 HIS x 314 REMARK 465 LYS x 315 REMARK 465 VAL x 316 REMARK 465 LYS x 317 REMARK 465 LEU x 318 REMARK 465 VAL x 319 REMARK 465 SER x 320 REMARK 465 GLU x 321 REMARK 465 ASN x 322 REMARK 465 ALA x 323 REMARK 465 LEU x 324 REMARK 465 GLU x 325 REMARK 465 GLU x 326 REMARK 465 GLN x 327 REMARK 465 LEU x 328 REMARK 465 ALA x 329 REMARK 465 GLU x 330 REMARK 465 SER x 331 REMARK 465 LEU x 332 REMARK 465 LYS x 333 REMARK 465 PHE x 334 REMARK 465 GLU x 335 REMARK 465 GLY x 336 REMARK 465 ALA x 368 REMARK 465 ALA x 369 REMARK 465 GLY x 370 REMARK 465 GLU x 371 REMARK 465 ALA x 372 REMARK 465 GLY x 373 REMARK 465 GLY x 374 REMARK 465 ILE x 375 REMARK 465 MET x 632 REMARK 465 GLY x 633 REMARK 465 GLN x 634 REMARK 465 GLU x 635 REMARK 465 GLU x 636 REMARK 465 VAL x 836 REMARK 465 ALA x 837 REMARK 465 ARG x 838 REMARK 465 SER x 839 REMARK 465 LEU x 840 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR x 376 N REMARK 470 GLU x 387 CG CD OE1 OE2 REMARK 470 GLU x 432 CG CD OE1 OE2 REMARK 470 GLU x 455 CG CD OE1 OE2 REMARK 470 ASP x 469 CG OD1 OD2 REMARK 470 GLU x 473 CG CD OE1 OE2 REMARK 470 GLU x 474 CG CD OE1 OE2 REMARK 470 ASP x 478 CG OD1 OD2 REMARK 470 GLU x 494 CG CD OE1 OE2 REMARK 470 GLU x 497 CG CD OE1 OE2 REMARK 470 ASP x 526 CG OD1 OD2 REMARK 470 ASP x 539 CG OD1 OD2 REMARK 470 ASP x 546 CG OD1 OD2 REMARK 470 GLU x 570 CG CD OE1 OE2 REMARK 470 GLU x 598 CG CD OE1 OE2 REMARK 470 LYS x 599 CG CD CE NZ REMARK 470 GLU x 603 CG CD OE1 OE2 REMARK 470 LYS x 611 CG CD CE NZ REMARK 470 PHE x 612 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE x 628 CG1 CG2 CD1 REMARK 470 PHE x 629 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS x 637 CG CD CE NZ REMARK 470 LYS x 638 CG CD CE NZ REMARK 470 GLU x 712 CG CD OE1 OE2 REMARK 470 ASP x 715 CG OD1 OD2 REMARK 470 GLU x 743 CG CD OE1 OE2 REMARK 470 PHE x 755 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU x 770 CG CD OE1 OE2 REMARK 470 ILE x 779 CG1 CG2 CD1 REMARK 470 SER x 795 OG REMARK 470 PHE x 799 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS x 800 CG CD CE NZ REMARK 470 ASP x 801 CG OD1 OD2 REMARK 470 GLU x 805 CG CD OE1 OE2 REMARK 470 MET x 810 CG SD CE REMARK 470 ASN x 820 CG OD1 ND2 REMARK 470 ASP x 821 CG OD1 OD2 REMARK 470 LYS x 823 CG CD CE NZ REMARK 470 GLU x 829 CG CD OE1 OE2 REMARK 470 GLU x 832 CG CD OE1 OE2 REMARK 470 LYS x 833 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA x 342 154.03 179.49 REMARK 500 HIS x 399 -10.00 72.13 REMARK 500 ASP x 424 82.03 61.53 REMARK 500 VAL x 426 92.05 64.13 REMARK 500 PRO x 428 2.75 -46.69 REMARK 500 ALA x 467 48.74 -86.87 REMARK 500 LEU x 468 19.06 -142.89 REMARK 500 GLU x 473 49.36 -89.35 REMARK 500 PRO x 512 42.79 -83.31 REMARK 500 ARG x 529 -2.72 69.66 REMARK 500 THR x 534 50.60 -119.18 REMARK 500 LYS x 638 -5.63 72.97 REMARK 500 VAL x 667 139.32 66.42 REMARK 500 ASP x 740 -99.21 -81.00 REMARK 500 LEU x 741 -151.09 59.77 REMARK 500 ARG x 742 -81.86 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26629 RELATED DB: EMDB REMARK 900 COMPACT IF2-GDP BOUND TO THE PSEUDOMONAS AERUGINOSA 70S RIBOSOME REMARK 900 INITIATION COMPLEX, FROM FOCUSED CLASSIFICATION AND REFINEMENT (I-A) DBREF 7UNQ x 1 840 UNP Q9HV55 IF2_PSEAE 1 840 SEQRES 1 x 840 MET THR GLN VAL THR VAL LYS GLU LEU ALA GLN VAL VAL SEQRES 2 x 840 ASP THR PRO VAL GLU ARG LEU LEU LEU GLN MET ARG ASP SEQRES 3 x 840 ALA GLY LEU PRO HIS THR SER ALA GLU GLN VAL VAL THR SEQRES 4 x 840 ASP SER GLU LYS GLN ALA LEU LEU THR HIS LEU LYS GLY SEQRES 5 x 840 SER HIS GLY ASP ARG ALA SER GLU PRO ARG LYS ILE THR SEQRES 6 x 840 LEU GLN ARG LYS THR THR THR THR LEU LYS VAL GLY GLY SEQRES 7 x 840 SER LYS THR VAL SER VAL GLU VAL ARG LYS LYS LYS THR SEQRES 8 x 840 TYR VAL LYS ARG SER PRO ASP GLU ILE GLU ALA GLU ARG SEQRES 9 x 840 GLN ARG GLU LEU GLU GLU GLN ARG ALA ALA GLU GLU ALA SEQRES 10 x 840 GLU ARG LEU LYS ALA GLU GLU ALA ALA ALA ARG GLN ARG SEQRES 11 x 840 ALA GLU GLU GLU ALA ARG LYS ALA GLU GLU ALA ALA ARG SEQRES 12 x 840 ALA LYS ALA ALA GLN GLU ALA ALA ALA THR ALA GLY ALA SEQRES 13 x 840 GLU PRO ALA VAL VAL ALA ASP VAL ALA VAL ALA GLU PRO SEQRES 14 x 840 VAL ALA LYS PRO ALA ALA VAL GLU GLU ARG LYS LYS GLU SEQRES 15 x 840 GLU PRO ARG ARG VAL PRO LYS ARG ASP GLU ASP ASP ASP SEQRES 16 x 840 ARG ARG ASP ARG LYS HIS THR GLN HIS ARG PRO SER VAL SEQRES 17 x 840 LYS GLU LYS GLU LYS VAL PRO ALA PRO ARG VAL ALA PRO SEQRES 18 x 840 ARG SER THR ASP GLU GLU SER ASP GLY TYR ARG ARG GLY SEQRES 19 x 840 GLY ARG GLY GLY LYS SER LYS LEU LYS LYS ARG ASN GLN SEQRES 20 x 840 HIS GLY PHE GLN ASN PRO THR GLY PRO ILE VAL ARG GLU SEQRES 21 x 840 VAL ASN ILE GLY GLU THR ILE THR VAL ALA GLU LEU ALA SEQRES 22 x 840 ALA GLN MET SER VAL LYS GLY ALA GLU VAL VAL LYS PHE SEQRES 23 x 840 MET PHE LYS MET GLY SER PRO VAL THR ILE ASN GLN VAL SEQRES 24 x 840 LEU ASP GLN GLU THR ALA GLN LEU VAL ALA GLU GLU LEU SEQRES 25 x 840 GLY HIS LYS VAL LYS LEU VAL SER GLU ASN ALA LEU GLU SEQRES 26 x 840 GLU GLN LEU ALA GLU SER LEU LYS PHE GLU GLY GLU ALA SEQRES 27 x 840 VAL THR ARG ALA PRO VAL VAL THR VAL MET GLY HIS VAL SEQRES 28 x 840 ASP HIS GLY LYS THR SER LEU LEU ASP TYR ILE ARG ARG SEQRES 29 x 840 ALA LYS VAL ALA ALA GLY GLU ALA GLY GLY ILE THR GLN SEQRES 30 x 840 HIS ILE GLY ALA TYR HIS VAL GLU THR GLU ARG GLY MET SEQRES 31 x 840 VAL THR PHE LEU ASP THR PRO GLY HIS ALA ALA PHE THR SEQRES 32 x 840 ALA MET ARG ALA ARG GLY ALA GLN ALA THR ASP ILE VAL SEQRES 33 x 840 ILE LEU VAL VAL ALA ALA ASP ASP GLY VAL MET PRO GLN SEQRES 34 x 840 THR GLN GLU ALA VAL GLN HIS ALA LYS ALA ALA GLY VAL SEQRES 35 x 840 PRO ILE VAL VAL ALA VAL ASN LYS ILE ASP LYS PRO GLU SEQRES 36 x 840 ALA ASN PRO ASP ASN ILE LYS ASN GLY LEU ALA ALA LEU SEQRES 37 x 840 ASP VAL ILE PRO GLU GLU TRP GLY GLY ASP ALA PRO PHE SEQRES 38 x 840 VAL PRO VAL SER ALA LYS LEU GLY THR GLY VAL ASP GLU SEQRES 39 x 840 LEU LEU GLU ALA VAL LEU LEU GLN ALA GLU VAL LEU GLU SEQRES 40 x 840 LEU LYS ALA THR PRO SER ALA PRO GLY ARG GLY VAL VAL SEQRES 41 x 840 VAL GLU SER ARG LEU ASP LYS GLY ARG GLY PRO VAL ALA SEQRES 42 x 840 THR VAL LEU VAL GLN ASP GLY THR LEU ARG GLN GLY ASP SEQRES 43 x 840 MET VAL LEU VAL GLY ILE ASN TYR GLY ARG VAL ARG ALA SEQRES 44 x 840 MET LEU ASP GLU ASN GLY LYS PRO ILE LYS GLU ALA GLY SEQRES 45 x 840 PRO SER ILE PRO VAL GLU ILE LEU GLY LEU ASP GLY THR SEQRES 46 x 840 PRO ASP ALA GLY ASP GLU MET THR VAL VAL ALA ASP GLU SEQRES 47 x 840 LYS LYS ALA ARG GLU VAL ALA LEU PHE ARG GLN GLY LYS SEQRES 48 x 840 PHE ARG GLU VAL LYS LEU ALA ARG ALA HIS ALA GLY LYS SEQRES 49 x 840 LEU GLU ASN ILE PHE GLU ASN MET GLY GLN GLU GLU LYS SEQRES 50 x 840 LYS THR LEU ASN ILE VAL LEU LYS ALA ASP VAL ARG GLY SEQRES 51 x 840 SER LEU GLU ALA LEU GLN GLY SER LEU SER GLY LEU GLY SEQRES 52 x 840 ASN ASP GLU VAL GLN VAL ARG VAL VAL GLY GLY GLY VAL SEQRES 53 x 840 GLY GLY ILE THR GLU SER ASP ALA ASN LEU ALA LEU ALA SEQRES 54 x 840 SER ASN ALA VAL LEU PHE GLY PHE ASN VAL ARG ALA ASP SEQRES 55 x 840 ALA GLY ALA ARG LYS ILE VAL GLU ALA GLU GLY LEU ASP SEQRES 56 x 840 MET ARG TYR TYR ASN VAL ILE TYR ASP ILE ILE GLU ASP SEQRES 57 x 840 VAL LYS LYS ALA LEU THR GLY MET LEU GLY SER ASP LEU SEQRES 58 x 840 ARG GLU ASN ILE LEU GLY ILE ALA GLU VAL ARG ASP VAL SEQRES 59 x 840 PHE ARG SER PRO LYS PHE GLY ALA ILE ALA GLY CYS MET SEQRES 60 x 840 VAL THR GLU GLY MET VAL HIS ARG ASN ARG PRO ILE ARG SEQRES 61 x 840 VAL LEU ARG ASP ASP VAL VAL ILE PHE GLU GLY GLU LEU SEQRES 62 x 840 GLU SER LEU ARG ARG PHE LYS ASP ASP VAL ALA GLU VAL SEQRES 63 x 840 ARG ALA GLY MET GLU CYS GLY ILE GLY VAL LYS SER TYR SEQRES 64 x 840 ASN ASP VAL LYS VAL GLY ASP LYS ILE GLU VAL PHE GLU SEQRES 65 x 840 LYS VAL GLU VAL ALA ARG SER LEU HET GDP x 901 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 HELIX 1 AA1 GLY x 354 VAL x 367 1 14 HELIX 2 AA2 ALA x 400 MET x 405 1 6 HELIX 3 AA3 GLN x 429 ALA x 440 1 12 HELIX 4 AA4 PRO x 458 LEU x 465 1 8 HELIX 5 AA5 ALA x 466 ASP x 469 5 4 HELIX 6 AA6 GLY x 491 LEU x 506 1 16 HELIX 7 AA7 ASP x 597 GLY x 623 1 27 HELIX 8 AA8 VAL x 648 LEU x 659 1 12 HELIX 9 AA9 THR x 680 ASN x 691 1 12 HELIX 10 AB1 ASP x 702 GLY x 713 1 12 HELIX 11 AB2 VAL x 721 GLY x 735 1 15 SHEET 1 AA1 6 TYR x 382 GLU x 385 0 SHEET 2 AA1 6 MET x 390 PHE x 393 -1 O VAL x 391 N VAL x 384 SHEET 3 AA1 6 VAL x 344 GLY x 349 1 N VAL x 345 O THR x 392 SHEET 4 AA1 6 ILE x 415 VAL x 420 1 O ILE x 417 N MET x 348 SHEET 5 AA1 6 ILE x 444 VAL x 448 1 O ALA x 447 N LEU x 418 SHEET 6 AA1 6 PHE x 481 PRO x 483 1 O VAL x 482 N VAL x 446 SHEET 1 AA2 7 ASN x 553 ARG x 556 0 SHEET 2 AA2 7 MET x 547 VAL x 550 -1 N VAL x 550 O ASN x 553 SHEET 3 AA2 7 GLU x 591 VAL x 595 -1 O THR x 593 N LEU x 549 SHEET 4 AA2 7 ARG x 517 ASP x 526 -1 N GLY x 518 O MET x 592 SHEET 5 AA2 7 GLY x 530 ASP x 539 -1 O LEU x 536 N VAL x 519 SHEET 6 AA2 7 GLU x 578 LEU x 580 -1 O ILE x 579 N ALA x 533 SHEET 7 AA2 7 ALA x 559 LEU x 561 -1 N LEU x 561 O GLU x 578 SHEET 1 AA3 3 ARG x 670 VAL x 671 0 SHEET 2 AA3 3 ASN x 641 ALA x 646 1 N ILE x 642 O ARG x 670 SHEET 3 AA3 3 GLY x 675 VAL x 676 1 O GLY x 675 N ALA x 646 SHEET 1 AA4 4 ARG x 670 VAL x 671 0 SHEET 2 AA4 4 ASN x 641 ALA x 646 1 N ILE x 642 O ARG x 670 SHEET 3 AA4 4 VAL x 693 PHE x 697 1 O VAL x 693 N VAL x 643 SHEET 4 AA4 4 MET x 716 TYR x 719 1 O TYR x 719 N GLY x 696 SHEET 1 AA5 7 VAL x 786 GLY x 791 0 SHEET 2 AA5 7 ILE x 779 ARG x 783 -1 N ILE x 779 O GLY x 791 SHEET 3 AA5 7 LYS x 827 LYS x 833 -1 O LYS x 827 N LEU x 782 SHEET 4 AA5 7 GLU x 743 VAL x 754 -1 N ALA x 749 O ILE x 828 SHEET 5 AA5 7 ALA x 764 GLU x 770 -1 O GLY x 765 N ASP x 753 SHEET 6 AA5 7 GLU x 811 VAL x 816 -1 O ILE x 814 N ALA x 764 SHEET 7 AA5 7 LEU x 793 SER x 795 -1 N GLU x 794 O GLY x 815 SHEET 1 AA6 2 VAL x 773 HIS x 774 0 SHEET 2 AA6 2 GLU x 805 VAL x 806 -1 O VAL x 806 N VAL x 773 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000