HEADER TOXIN 12-APR-22 7UO3 TITLE CO-CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM TLDE1A IN COMPLEX WITH TITLE 2 D-ALANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TLDE1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MUREIN L,D-TRANSPEPTIDASE, SCIV PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CONSTRUCT HAS A HIS-TAG AT THE CARBOXY-TERMINUS, COMPND 7 BUT THE TAG INTERACTS WITH THE ACTIVE SITE OF A SYMMETRY-RELATED COPY COMPND 8 OF THE PROTEIN; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HIS-HIS-HIS-HIS; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: HIS-TAG FROM A SYMMETRY-RELATED COPY OF THE TLDE1A COMPND 14 CONSTRUCT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: SCIV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GOLD; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: GOLD KEYWDS TYPE VI SECRETION SYSTEM, SALMONELLA TYPHIMURIUM, L, D- KEYWDS 2 CARBOXYPEPTIDASE, D-TRANSPEPTIDASE, PEPTIDOGLYCAN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR N.LORENTE COBO,G.PREHNA REVDAT 3 18-OCT-23 7UO3 1 REMARK REVDAT 2 16-NOV-22 7UO3 1 JRNL REVDAT 1 02-NOV-22 7UO3 0 JRNL AUTH N.LORENTE COBO,S.SIBINELLI-SOUSA,J.BIBOY,W.VOLLMER, JRNL AUTH 2 E.BAYER-SANTOS,G.PREHNA JRNL TITL MOLECULAR CHARACTERIZATION OF THE TYPE VI SECRETION SYSTEM JRNL TITL 2 EFFECTOR TLDE1A REVEALS A STRUCTURALLY ALTERED JRNL TITL 3 LD-TRANSPEPTIDASE FOLD. JRNL REF J.BIOL.CHEM. V. 298 02556 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36183829 JRNL DOI 10.1016/J.JBC.2022.102556 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7000 - 3.4400 1.00 2713 150 0.1539 0.1773 REMARK 3 2 3.4400 - 2.7300 1.00 2557 133 0.1673 0.2291 REMARK 3 3 2.7300 - 2.3900 1.00 2540 107 0.1805 0.2073 REMARK 3 4 2.3900 - 2.1700 1.00 2509 133 0.1661 0.2012 REMARK 3 5 2.1700 - 2.0100 1.00 2473 140 0.1790 0.2309 REMARK 3 6 2.0100 - 1.8900 1.00 2482 123 0.2473 0.2834 REMARK 3 7 1.8900 - 1.8000 1.00 2480 124 0.2988 0.3367 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5088 26.3567 45.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.2047 REMARK 3 T33: 0.1822 T12: 0.0168 REMARK 3 T13: -0.0031 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 9.1516 L22: 8.4864 REMARK 3 L33: 8.0662 L12: 2.4593 REMARK 3 L13: -1.4117 L23: -0.3220 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.3676 S13: 0.3550 REMARK 3 S21: 0.2797 S22: -0.1669 S23: -0.2258 REMARK 3 S31: -0.5213 S32: 0.1707 S33: 0.0863 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6917 26.3008 40.2743 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2400 REMARK 3 T33: 0.2152 T12: 0.0026 REMARK 3 T13: 0.0116 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.8259 L22: 3.3384 REMARK 3 L33: 3.0318 L12: 3.9017 REMARK 3 L13: 3.5872 L23: 2.5290 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: -0.1722 S13: 0.2926 REMARK 3 S21: -0.1815 S22: -0.2718 S23: 0.2171 REMARK 3 S31: -0.2671 S32: -0.3878 S33: 0.2533 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2557 10.3225 36.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.2097 REMARK 3 T33: 0.2712 T12: -0.0327 REMARK 3 T13: -0.0305 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.6610 L22: 3.4500 REMARK 3 L33: 3.2470 L12: -0.8181 REMARK 3 L13: 0.0698 L23: 0.5874 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.0238 S13: -0.4029 REMARK 3 S21: -0.1450 S22: 0.0773 S23: 0.1338 REMARK 3 S31: -0.0223 S32: -0.0819 S33: -0.0439 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0566 24.1398 37.1997 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.3608 REMARK 3 T33: 0.2937 T12: -0.0378 REMARK 3 T13: 0.0117 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.4297 L22: 5.1301 REMARK 3 L33: 4.8344 L12: 0.3674 REMARK 3 L13: 0.3565 L23: -4.9177 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.1481 S13: 0.1165 REMARK 3 S21: -0.0085 S22: -0.3568 S23: -0.6119 REMARK 3 S31: -0.1580 S32: 0.7780 S33: 0.4146 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4151 21.2608 17.2881 REMARK 3 T TENSOR REMARK 3 T11: 0.5314 T22: 0.8324 REMARK 3 T33: 0.3566 T12: 0.0083 REMARK 3 T13: 0.0698 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 4.8417 L22: 6.7332 REMARK 3 L33: 5.6439 L12: 5.5047 REMARK 3 L13: 5.1471 L23: 5.5717 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: 0.3942 S13: -0.3164 REMARK 3 S21: -0.6708 S22: -0.3173 S23: -0.8004 REMARK 3 S31: 0.1038 S32: 0.8587 S33: 0.0795 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2474 25.0044 22.3824 REMARK 3 T TENSOR REMARK 3 T11: 0.2485 T22: 0.4495 REMARK 3 T33: 0.3069 T12: -0.0510 REMARK 3 T13: 0.0440 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.0338 L22: 2.0537 REMARK 3 L33: 4.4554 L12: 0.6322 REMARK 3 L13: 3.6185 L23: -0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.1933 S12: 0.9291 S13: 0.1100 REMARK 3 S21: -0.3159 S22: 0.0369 S23: -0.0243 REMARK 3 S31: -0.1196 S32: 0.6566 S33: 0.1086 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9494 23.4616 18.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.3666 REMARK 3 T33: 0.2478 T12: -0.0591 REMARK 3 T13: 0.0105 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 4.5626 L22: 4.0314 REMARK 3 L33: 5.4804 L12: 2.0469 REMARK 3 L13: 2.6407 L23: 3.2432 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: 0.6889 S13: 0.1389 REMARK 3 S21: -0.6169 S22: 0.1544 S23: 0.1149 REMARK 3 S31: -0.2692 S32: 0.2999 S33: 0.0883 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6236 13.8799 38.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.2332 T22: 0.2198 REMARK 3 T33: 0.2589 T12: 0.0562 REMARK 3 T13: -0.0039 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 4.9495 L22: 2.4660 REMARK 3 L33: 4.4279 L12: 0.3301 REMARK 3 L13: 1.9249 L23: -1.8259 REMARK 3 S TENSOR REMARK 3 S11: 0.2243 S12: -0.1196 S13: -0.6902 REMARK 3 S21: -0.0329 S22: -0.0926 S23: -0.0770 REMARK 3 S31: 0.4318 S32: 0.3630 S33: -0.2137 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0279 20.0283 31.2053 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2596 REMARK 3 T33: 0.2296 T12: -0.0118 REMARK 3 T13: 0.0012 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.1462 L22: 1.0588 REMARK 3 L33: 3.6130 L12: -0.2580 REMARK 3 L13: 1.4801 L23: 0.4178 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.2237 S13: -0.1666 REMARK 3 S21: -0.2048 S22: 0.0033 S23: -0.0215 REMARK 3 S31: 0.1232 S32: -0.0244 S33: -0.0617 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2744 35.8380 37.1378 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.2210 REMARK 3 T33: 0.3159 T12: -0.0259 REMARK 3 T13: -0.0264 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 7.5450 L22: 7.0364 REMARK 3 L33: 6.5216 L12: 3.0479 REMARK 3 L13: 3.1188 L23: 3.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: 0.2550 S13: 0.8027 REMARK 3 S21: -0.3135 S22: 0.0220 S23: 0.0651 REMARK 3 S31: -0.4877 S32: 0.2986 S33: 0.1613 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2851 31.5448 42.9219 REMARK 3 T TENSOR REMARK 3 T11: 0.3323 T22: 0.3473 REMARK 3 T33: 0.3267 T12: -0.0685 REMARK 3 T13: -0.0187 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 8.6071 L22: 3.1011 REMARK 3 L33: 5.4057 L12: 3.5235 REMARK 3 L13: -0.3391 L23: -3.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.2365 S12: -0.1498 S13: 0.5869 REMARK 3 S21: 0.9338 S22: -0.3219 S23: -0.4386 REMARK 3 S31: -0.8796 S32: 0.7077 S33: 0.1229 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8475 19.8941 38.9888 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.2794 REMARK 3 T33: 0.2188 T12: -0.0158 REMARK 3 T13: -0.0134 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 5.1990 L22: 4.4714 REMARK 3 L33: 3.8160 L12: -1.3236 REMARK 3 L13: 1.6666 L23: -1.7550 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: -0.4038 S13: 0.0231 REMARK 3 S21: 0.0732 S22: 0.0485 S23: 0.2663 REMARK 3 S31: 0.0529 S32: -0.0714 S33: -0.3008 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2083 13.2150 24.2462 REMARK 3 T TENSOR REMARK 3 T11: 0.9571 T22: 0.6909 REMARK 3 T33: 0.4424 T12: 0.0273 REMARK 3 T13: 0.1399 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 4.7792 L22: 6.1996 REMARK 3 L33: 4.0863 L12: -2.3945 REMARK 3 L13: 4.4134 L23: -1.9523 REMARK 3 S TENSOR REMARK 3 S11: 0.5301 S12: 2.0551 S13: -0.5818 REMARK 3 S21: -1.4904 S22: -0.7693 S23: -0.0046 REMARK 3 S31: 2.2368 S32: 2.0608 S33: -0.0840 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1806 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.18500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7UMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12MG/ML TLDE1A, 15% PEG 3350, 0.2M REMARK 280 AMMONIUM SULPHATE, SOAKED WITH 300MM D-ALANINE FOR 2 MINS, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.84950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.07000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.42475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.07000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.27425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.07000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.07000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.42475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.07000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.07000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.27425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.84950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1137 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 300 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1111 O HOH A 1131 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -55.43 -124.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UMA RELATED DB: PDB REMARK 900 7UMA IS TLDE1A WITHOUT LIGAND DBREF 7UO3 A 1 173 UNP H9L4J5 H9L4J5_SALTM 1 173 DBREF 7UO3 B 300 306 PDB 7UO3 7UO3 300 306 SEQADV 7UO3 GLY A 174 UNP H9L4J5 EXPRESSION TAG SEQRES 1 A 174 MET MET ALA VAL ARG LEU THR PHE ASP GLY GLN LYS LEU SEQRES 2 A 174 THR TRP PRO GLY ILE GLY ILE PHE LYS ALA THR THR GLY SEQRES 3 A 174 LEU PRO ASP LEU GLN TRP PRO ASP LYS GLN CYS VAL PRO SEQRES 4 A 174 ASP ALA ALA ILE PRO GLU GLY ASN TYR LYS LEU PHE ILE SEQRES 5 A 174 GLN PHE GLN GLY GLU ALA PRO ILE ARG ASN ALA ALA ASP SEQRES 6 A 174 CYS ASP LEU GLY PRO SER TRP GLY TRP SER THR ILE PRO SEQRES 7 A 174 ARG GLY GLN ALA ALA GLY THR CYS GLU ILE TYR TRP ALA SEQRES 8 A 174 ASN TRP GLY TYR ASN ARG ILE ARG LEU GLU SER ALA ASP SEQRES 9 A 174 GLU LYS THR ARG LYS ALA CYS GLY GLY LYS ARG GLY GLY SEQRES 10 A 174 PHE TYR ILE HIS ASP SER THR LYS GLY TYR SER HIS GLY SEQRES 11 A 174 CME ILE GLU VAL GLU PRO VAL PHE PHE ARG ILE LEU LYS SEQRES 12 A 174 GLN GLU THR GLU LYS GLU ASN GLY GLU LYS THR PHE THR SEQRES 13 A 174 VAL ASN VAL LYS TYR VAL SER GLY GLN GLN THR ASN GLY SEQRES 14 A 174 GLY THR LYS GLN GLY SEQRES 1 B 7 GLU HIS HIS HIS HIS HIS HIS MODRES 7UO3 CME A 131 CYS MODIFIED RESIDUE HET CME A 131 18 HET DAL A 901 12 HET DAL A 902 12 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET SO4 B 801 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM DAL D-ALANINE HETNAM SO4 SULFATE ION FORMUL 1 CME C5 H11 N O3 S2 FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *174(H2 O) HELIX 1 AA1 LEU A 27 GLN A 31 5 5 HELIX 2 AA2 TRP A 32 GLN A 36 5 5 HELIX 3 AA3 PRO A 78 ALA A 83 5 6 HELIX 4 AA4 GLY A 84 TRP A 90 1 7 HELIX 5 AA5 ASP A 104 LYS A 109 1 6 HELIX 6 AA6 ALA A 110 LYS A 114 5 5 HELIX 7 AA7 PRO A 136 GLU A 147 1 12 SHEET 1 AA111 PHE A 54 GLU A 57 0 SHEET 2 AA111 TRP A 74 THR A 76 1 O TRP A 74 N GLN A 55 SHEET 3 AA111 ASN A 96 SER A 102 -1 O ARG A 97 N SER A 75 SHEET 4 AA111 TYR A 119 HIS A 121 -1 O ILE A 120 N ILE A 98 SHEET 5 AA111 SER A 128 VAL A 134 1 O VAL A 134 N HIS A 121 SHEET 6 AA111 GLY A 19 GLY A 26 -1 N THR A 24 O GLU A 133 SHEET 7 AA111 LYS A 12 TRP A 15 -1 N LEU A 13 O PHE A 21 SHEET 8 AA111 VAL A 4 PHE A 8 -1 N THR A 7 O THR A 14 SHEET 9 AA111 PHE A 155 VAL A 159 1 O THR A 156 N LEU A 6 SHEET 10 AA111 GLY A 46 PHE A 51 -1 N GLY A 46 O VAL A 159 SHEET 11 AA111 ASN A 96 SER A 102 -1 O GLU A 101 N LYS A 49 SHEET 1 AA2 2 ILE A 60 ASN A 62 0 SHEET 2 AA2 2 ASP A 67 LEU A 68 -1 O ASP A 67 N ASN A 62 SSBOND 1 CYS A 37 CYS A 111 1555 1555 2.03 SSBOND 2 CYS A 66 CYS A 86 1555 1555 2.07 LINK C GLY A 130 N CME A 131 1555 1555 1.35 LINK C CME A 131 N ILE A 132 1555 1555 1.34 CRYST1 60.140 60.140 105.699 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009461 0.00000