HEADER TOXIN 12-APR-22 7UO8 TITLE CO-CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM TLDE1A IN COMPLEX WITH TITLE 2 D-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TLDE1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SCIV PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE CONSTRUCT HAS A HIS-TAG AT THE CARBOXY-TERMINUS, COMPND 7 BUT THE TAG INTERACTS WITH THE ACTIVE SITE OF A SYMMETRY-RELATED COPY COMPND 8 OF THE PROTEIN; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HIS-HIS-HIS-HIS-HIS; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: HIS-TAG FROM A SYMMETRY-RELATED COPY OF THE TLDE1A COMPND 14 CONSTRUCT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: SCIV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GOLD; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: GOLD KEYWDS TYPE VI SECRETION SYSTEM, SALMONELLA TYPHIMURIUM, L, D- KEYWDS 2 CARBOXYPEPTIDASE, D-TRANSPEPTIDASE, PEPTIDOGLYCAN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR N.LORENTE COBO,G.PREHNA REVDAT 3 18-OCT-23 7UO8 1 REMARK REVDAT 2 16-NOV-22 7UO8 1 JRNL REVDAT 1 02-NOV-22 7UO8 0 JRNL AUTH N.LORENTE COBO,S.SIBINELLI-SOUSA,J.BIBOY,W.VOLLMER, JRNL AUTH 2 E.BAYER-SANTOS,G.PREHNA JRNL TITL MOLECULAR CHARACTERIZATION OF THE TYPE VI SECRETION SYSTEM JRNL TITL 2 EFFECTOR TLDE1A REVEALS A STRUCTURALLY ALTERED JRNL TITL 3 LD-TRANSPEPTIDASE FOLD. JRNL REF J.BIOL.CHEM. V. 298 02556 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36183829 JRNL DOI 10.1016/J.JBC.2022.102556 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 26027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0500 - 3.3300 1.00 2939 166 0.1717 0.1718 REMARK 3 2 3.3300 - 2.6400 1.00 2826 131 0.1784 0.2129 REMARK 3 3 2.6400 - 2.3100 1.00 2734 132 0.1832 0.1683 REMARK 3 4 2.3100 - 2.1000 0.98 2702 140 0.2270 0.3005 REMARK 3 5 2.1000 - 1.9500 0.98 2653 146 0.2010 0.1968 REMARK 3 6 1.9500 - 1.8300 0.98 2670 122 0.2730 0.3461 REMARK 3 7 1.8300 - 1.7400 1.00 2684 154 0.2013 0.2014 REMARK 3 8 1.7400 - 1.6600 1.00 2696 132 0.2134 0.2221 REMARK 3 9 1.6600 - 1.6000 1.00 2538 135 0.2388 0.2534 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:15) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5822 25.6540 45.0979 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.2452 REMARK 3 T33: 0.1117 T12: 0.0236 REMARK 3 T13: 0.0209 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 1.7732 L22: 6.2620 REMARK 3 L33: 4.8002 L12: 2.0308 REMARK 3 L13: 0.8002 L23: 1.3341 REMARK 3 S TENSOR REMARK 3 S11: 0.1864 S12: -0.6453 S13: 0.4153 REMARK 3 S21: 0.1462 S22: -0.2450 S23: 0.0856 REMARK 3 S31: -0.0216 S32: -0.0994 S33: 0.0727 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 16:24) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9899 29.7229 42.7229 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1933 REMARK 3 T33: 0.1978 T12: 0.0231 REMARK 3 T13: -0.0085 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 2.5853 L22: 6.5907 REMARK 3 L33: 6.4473 L12: 3.4368 REMARK 3 L13: 2.9728 L23: 4.7343 REMARK 3 S TENSOR REMARK 3 S11: -0.1501 S12: -0.4033 S13: 0.4804 REMARK 3 S21: -0.1278 S22: 0.0234 S23: 0.2713 REMARK 3 S31: -0.6210 S32: -0.1900 S33: 0.2464 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 25:105) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8208 19.6525 29.2283 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1420 REMARK 3 T33: 0.0588 T12: -0.0086 REMARK 3 T13: 0.0166 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.8917 L22: 1.7423 REMARK 3 L33: 1.4978 L12: 0.9183 REMARK 3 L13: 0.7702 L23: 0.1036 REMARK 3 S TENSOR REMARK 3 S11: -0.1518 S12: 0.3271 S13: 0.0004 REMARK 3 S21: -0.3523 S22: 0.1092 S23: -0.0268 REMARK 3 S31: -0.0040 S32: 0.1590 S33: 0.0377 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 106:109) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9004 8.2940 45.3094 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.3810 REMARK 3 T33: 0.4338 T12: 0.0123 REMARK 3 T13: -0.0229 T23: 0.1631 REMARK 3 L TENSOR REMARK 3 L11: 5.6159 L22: 7.3956 REMARK 3 L33: 2.9416 L12: -0.9934 REMARK 3 L13: 3.1063 L23: 2.4311 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.8883 S13: -0.9507 REMARK 3 S21: 0.5045 S22: -0.0872 S23: -0.6980 REMARK 3 S31: 0.7574 S32: 0.6987 S33: 0.0293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 110:138) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6261 19.7465 32.8913 REMARK 3 T TENSOR REMARK 3 T11: 0.0764 T22: 0.1290 REMARK 3 T33: 0.0525 T12: -0.0096 REMARK 3 T13: 0.0059 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.5790 L22: 3.1014 REMARK 3 L33: 2.8022 L12: -0.0662 REMARK 3 L13: 1.2261 L23: -0.3961 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0879 S13: -0.0760 REMARK 3 S21: -0.1203 S22: -0.0385 S23: 0.0277 REMARK 3 S31: 0.0392 S32: 0.0055 S33: 0.0465 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 139:147) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5010 36.9573 37.3308 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1556 REMARK 3 T33: 0.4624 T12: -0.0163 REMARK 3 T13: -0.0745 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 6.1289 L22: 4.5446 REMARK 3 L33: 6.6263 L12: 4.8345 REMARK 3 L13: 2.0954 L23: 2.3928 REMARK 3 S TENSOR REMARK 3 S11: -0.3807 S12: 0.0939 S13: 1.5881 REMARK 3 S21: -0.5486 S22: -0.0840 S23: -0.1099 REMARK 3 S31: -0.7178 S32: 0.0785 S33: 0.3542 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 148:160) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7518 29.0144 44.7982 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.2605 REMARK 3 T33: 0.1739 T12: -0.0160 REMARK 3 T13: -0.0075 T23: -0.0715 REMARK 3 L TENSOR REMARK 3 L11: 5.7796 L22: 7.2177 REMARK 3 L33: 3.6867 L12: 2.0640 REMARK 3 L13: 0.7603 L23: -1.5142 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.6736 S13: 0.6140 REMARK 3 S21: 0.4544 S22: -0.3256 S23: -0.9991 REMARK 3 S31: -0.5088 S32: 0.1354 S33: 0.1469 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 161:175) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4175 21.5033 37.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.1877 REMARK 3 T33: 0.1758 T12: -0.0059 REMARK 3 T13: -0.0130 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.7529 L22: 6.2331 REMARK 3 L33: 4.9771 L12: 0.3660 REMARK 3 L13: -0.8287 L23: -1.3118 REMARK 3 S TENSOR REMARK 3 S11: 0.1504 S12: -0.2787 S13: 0.2935 REMARK 3 S21: -0.0042 S22: -0.0484 S23: 0.6468 REMARK 3 S31: -0.1761 S32: -0.1560 S33: -0.1127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1806 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26027 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7UMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12MG/ML TLDE1A, 15% PEG 3350, 0.2M REMARK 280 AMMONIUM SULPHATE, SOAKED WITH 161MM D-METHIONINE FOR 2 MINS 30 REMARK 280 SECS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.39800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.73050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.73050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.69900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.73050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.73050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.09700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.73050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.73050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.69900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.73050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.73050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.09700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.39800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 996 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 707 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 12 O HOH A 802 1.56 REMARK 500 HZ3 LYS A 22 O HOH A 804 1.60 REMARK 500 O HOH A 1047 O HOH A 1048 1.86 REMARK 500 NE2 HIS B 705 O HOH B 901 1.89 REMARK 500 O HOH A 806 O HOH B 905 1.89 REMARK 500 O HOH A 932 O HOH A 955 1.97 REMARK 500 O HOH A 945 O HOH A 981 1.98 REMARK 500 OE2 GLU A 135 O HOH A 801 2.01 REMARK 500 NZ LYS A 12 O HOH A 802 2.04 REMARK 500 N HIS B 702 O HOH B 902 2.06 REMARK 500 NE2 HIS B 706 O HOH B 903 2.08 REMARK 500 OE1 GLU A 145 O HOH A 803 2.10 REMARK 500 O HOH A 1051 O HOH A 1053 2.14 REMARK 500 NZ LYS A 22 O HOH A 804 2.15 REMARK 500 O HOH A 977 O HOH A 984 2.17 REMARK 500 O HOH A 861 O HOH A 994 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 960 O HOH A 960 8665 1.88 REMARK 500 O HOH A 833 O HOH A 903 6455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -69.32 -120.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 702 10.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1053 DISTANCE = 6.76 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UMA RELATED DB: PDB REMARK 900 RELATED ID: 7UO3 RELATED DB: PDB REMARK 900 7UMA SOAKED WITH D-ALANINE DBREF 7UO8 A 2 173 UNP H9L4J5 H9L4J5_SALTM 2 173 DBREF 7UO8 B 702 707 PDB 7UO8 7UO8 702 707 SEQADV 7UO8 GLY A 174 UNP H9L4J5 EXPRESSION TAG SEQADV 7UO8 GLU A 175 UNP H9L4J5 EXPRESSION TAG SEQRES 1 A 174 MET ALA VAL ARG LEU THR PHE ASP GLY GLN LYS LEU THR SEQRES 2 A 174 TRP PRO GLY ILE GLY ILE PHE LYS ALA THR THR GLY LEU SEQRES 3 A 174 PRO ASP LEU GLN TRP PRO ASP LYS GLN CYS VAL PRO ASP SEQRES 4 A 174 ALA ALA ILE PRO GLU GLY ASN TYR LYS LEU PHE ILE GLN SEQRES 5 A 174 PHE GLN GLY GLU ALA PRO ILE ARG ASN ALA ALA ASP CYS SEQRES 6 A 174 ASP LEU GLY PRO SER TRP GLY TRP SER THR ILE PRO ARG SEQRES 7 A 174 GLY GLN ALA ALA GLY THR CYS GLU ILE TYR TRP ALA ASN SEQRES 8 A 174 TRP GLY TYR ASN ARG ILE ARG LEU GLU SER ALA ASP GLU SEQRES 9 A 174 LYS THR ARG LYS ALA CYS GLY GLY LYS ARG GLY GLY PHE SEQRES 10 A 174 TYR ILE HIS ASP SER THR LYS GLY TYR SER HIS GLY CME SEQRES 11 A 174 ILE GLU VAL GLU PRO VAL PHE PHE ARG ILE LEU LYS GLN SEQRES 12 A 174 GLU THR GLU LYS GLU ASN GLY GLU LYS THR PHE THR VAL SEQRES 13 A 174 ASN VAL LYS TYR VAL SER GLY GLN GLN THR ASN GLY GLY SEQRES 14 A 174 THR LYS GLN GLY GLU SEQRES 1 B 6 HIS HIS HIS HIS HIS HIS MODRES 7UO8 CME A 131 CYS MODIFIED RESIDUE HET CME A 131 18 HET MED A 701 19 HET SO4 B 801 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM MED D-METHIONINE HETNAM SO4 SULFATE ION FORMUL 1 CME C5 H11 N O3 S2 FORMUL 3 MED C5 H11 N O2 S FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *262(H2 O) HELIX 1 AA1 TRP A 32 GLN A 36 5 5 HELIX 2 AA2 ARG A 79 THR A 85 5 7 HELIX 3 AA3 CYS A 86 ALA A 91 1 6 HELIX 4 AA4 ASP A 104 ALA A 110 1 7 HELIX 5 AA5 CYS A 111 LYS A 114 5 4 HELIX 6 AA6 PRO A 136 GLU A 147 1 12 SHEET 1 AA111 PHE A 54 GLU A 57 0 SHEET 2 AA111 TRP A 74 THR A 76 1 O TRP A 74 N GLN A 55 SHEET 3 AA111 ASN A 96 SER A 102 -1 O ARG A 97 N SER A 75 SHEET 4 AA111 TYR A 119 HIS A 121 -1 O ILE A 120 N ILE A 98 SHEET 5 AA111 ILE A 132 VAL A 134 1 O VAL A 134 N HIS A 121 SHEET 6 AA111 GLY A 19 THR A 25 -1 N THR A 24 O GLU A 133 SHEET 7 AA111 LYS A 12 TRP A 15 -1 N LEU A 13 O PHE A 21 SHEET 8 AA111 ALA A 3 PHE A 8 -1 N THR A 7 O THR A 14 SHEET 9 AA111 THR A 154 VAL A 159 1 O THR A 156 N LEU A 6 SHEET 10 AA111 GLY A 46 PHE A 51 -1 N GLY A 46 O VAL A 159 SHEET 11 AA111 ASN A 96 SER A 102 -1 O GLU A 101 N LYS A 49 SHEET 1 AA2 2 ILE A 60 ASN A 62 0 SHEET 2 AA2 2 ASP A 67 LEU A 68 -1 O ASP A 67 N ASN A 62 SSBOND 1 CYS A 37 CYS A 111 1555 1555 2.03 SSBOND 2 CYS A 66 CYS A 86 1555 1555 2.04 LINK C GLY A 130 N CME A 131 1555 1555 1.32 LINK C CME A 131 N ILE A 132 1555 1555 1.34 CRYST1 59.461 59.461 106.796 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016818 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009364 0.00000