HEADER DNA BINDING PROTEIN/DNA 12-APR-22 7UOG TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND ASYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING TITLE 3 THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A COMPND 4 P*CP*CP*CP*GP*CP*CP*TP*T)-3'; COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(GP*TP*AP*AP*GP*GP*CP*GP*GP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*T COMPND 10 P*TP*GP*TP*CP*AP*CP*AP*G)-3'; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.WARD,C.D.SNOW REVDAT 3 01-NOV-23 7UOG 1 JRNL REVDAT 2 25-OCT-23 7UOG 1 REMARK REVDAT 1 19-APR-23 7UOG 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7700 - 6.3300 0.97 1362 151 0.1734 0.1729 REMARK 3 2 6.3300 - 5.0300 1.00 1337 151 0.1701 0.2190 REMARK 3 3 5.0300 - 4.3900 1.00 1325 147 0.1593 0.1761 REMARK 3 4 4.3900 - 3.9900 1.00 1324 144 0.1650 0.2031 REMARK 3 5 3.9900 - 3.7100 1.00 1315 142 0.1797 0.2169 REMARK 3 6 3.7100 - 3.4900 1.00 1287 146 0.2071 0.2205 REMARK 3 7 3.4900 - 3.3100 0.99 1296 141 0.1837 0.2417 REMARK 3 8 3.3100 - 3.1700 1.00 1290 134 0.2071 0.2255 REMARK 3 9 3.1700 - 3.0500 1.00 1300 153 0.2751 0.2775 REMARK 3 10 3.0500 - 2.9400 1.00 1286 143 0.3179 0.3261 REMARK 3 11 2.9400 - 2.8500 1.00 1289 147 0.2929 0.3273 REMARK 3 12 2.8500 - 2.7700 1.00 1281 138 0.2903 0.3829 REMARK 3 13 2.7700 - 2.7000 1.00 1292 148 0.2923 0.3433 REMARK 3 14 2.7000 - 2.6300 1.00 1282 136 0.3160 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3283 REMARK 3 ANGLE : 1.361 4706 REMARK 3 CHIRALITY : 0.076 510 REMARK 3 PLANARITY : 0.010 388 REMARK 3 DIHEDRAL : 27.679 866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5464 -19.0093 -10.4187 REMARK 3 T TENSOR REMARK 3 T11: 0.7125 T22: 0.6622 REMARK 3 T33: 0.7302 T12: -0.0303 REMARK 3 T13: 0.1873 T23: -0.2134 REMARK 3 L TENSOR REMARK 3 L11: 2.8337 L22: 2.6018 REMARK 3 L33: 1.0460 L12: -0.7880 REMARK 3 L13: -0.4273 L23: 0.1868 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: -0.0570 S13: 0.4868 REMARK 3 S21: -0.4502 S22: 0.2750 S23: -0.7302 REMARK 3 S31: -0.2915 S32: 0.1827 S33: -0.3240 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4110 -52.4801 -42.2634 REMARK 3 T TENSOR REMARK 3 T11: 1.5926 T22: 1.3084 REMARK 3 T33: 1.3574 T12: 0.1489 REMARK 3 T13: 0.7995 T23: -0.7277 REMARK 3 L TENSOR REMARK 3 L11: 0.7689 L22: 4.0664 REMARK 3 L33: 2.7990 L12: -1.1684 REMARK 3 L13: -0.6101 L23: 3.0357 REMARK 3 S TENSOR REMARK 3 S11: 0.5461 S12: -0.1478 S13: -0.6210 REMARK 3 S21: 0.3486 S22: -0.1012 S23: -0.0517 REMARK 3 S31: 0.2965 S32: -0.1283 S33: 0.7412 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3461 -58.0791 -44.0421 REMARK 3 T TENSOR REMARK 3 T11: 1.6978 T22: 1.3326 REMARK 3 T33: 1.3165 T12: 0.2709 REMARK 3 T13: 0.3689 T23: -0.6251 REMARK 3 L TENSOR REMARK 3 L11: 0.8491 L22: 1.9673 REMARK 3 L33: 0.5992 L12: -0.2434 REMARK 3 L13: -0.3958 L23: 1.0555 REMARK 3 S TENSOR REMARK 3 S11: 0.2545 S12: 0.3466 S13: 0.1418 REMARK 3 S21: -0.5242 S22: 0.0401 S23: 0.0078 REMARK 3 S31: 0.5166 S32: 0.4358 S33: -0.1580 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4882 -19.4430 -14.4776 REMARK 3 T TENSOR REMARK 3 T11: 0.9004 T22: 0.6546 REMARK 3 T33: 0.7665 T12: -0.0929 REMARK 3 T13: 0.3736 T23: -0.1675 REMARK 3 L TENSOR REMARK 3 L11: 1.4712 L22: 1.7426 REMARK 3 L33: 1.9749 L12: -0.8552 REMARK 3 L13: 0.2982 L23: 0.4203 REMARK 3 S TENSOR REMARK 3 S11: 0.2018 S12: 0.3596 S13: 0.5856 REMARK 3 S21: -1.3288 S22: 0.4522 S23: -1.0629 REMARK 3 S31: -0.7604 S32: 0.0755 S33: -0.5192 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9740 -47.8313 -14.5452 REMARK 3 T TENSOR REMARK 3 T11: 0.6514 T22: 0.5718 REMARK 3 T33: 0.9513 T12: -0.0813 REMARK 3 T13: 0.2056 T23: -0.2813 REMARK 3 L TENSOR REMARK 3 L11: 2.7712 L22: 1.5804 REMARK 3 L33: 2.9910 L12: -0.3218 REMARK 3 L13: -0.6087 L23: 0.1959 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.2349 S13: -0.9524 REMARK 3 S21: -0.6502 S22: 0.1383 S23: -0.0582 REMARK 3 S31: 0.2220 S32: 0.1257 S33: -0.0998 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4475 -48.7063 -6.3424 REMARK 3 T TENSOR REMARK 3 T11: 0.5981 T22: 0.5613 REMARK 3 T33: 0.9735 T12: -0.0266 REMARK 3 T13: 0.3268 T23: -0.1800 REMARK 3 L TENSOR REMARK 3 L11: 0.5044 L22: 1.2272 REMARK 3 L33: 2.9480 L12: -0.2855 REMARK 3 L13: 1.1187 L23: -0.0525 REMARK 3 S TENSOR REMARK 3 S11: -0.1932 S12: 0.2173 S13: -0.9373 REMARK 3 S21: -0.3060 S22: 0.3325 S23: -0.3932 REMARK 3 S31: 0.6511 S32: 0.4154 S33: -0.1027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5154 -38.8306 -5.1145 REMARK 3 T TENSOR REMARK 3 T11: 0.4238 T22: 0.6291 REMARK 3 T33: 0.7417 T12: -0.1050 REMARK 3 T13: 0.1376 T23: -0.1646 REMARK 3 L TENSOR REMARK 3 L11: 1.3399 L22: 2.5953 REMARK 3 L33: 1.6317 L12: -0.1356 REMARK 3 L13: -0.1649 L23: -0.5413 REMARK 3 S TENSOR REMARK 3 S11: -0.1663 S12: -0.1881 S13: -0.6202 REMARK 3 S21: -0.1366 S22: 0.0526 S23: 0.1412 REMARK 3 S31: 0.2713 S32: -0.4268 S33: 0.1305 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1963 -31.5716 -7.7112 REMARK 3 T TENSOR REMARK 3 T11: 0.4077 T22: 0.7216 REMARK 3 T33: 0.6931 T12: -0.0150 REMARK 3 T13: 0.0471 T23: -0.1491 REMARK 3 L TENSOR REMARK 3 L11: 3.8161 L22: 3.3972 REMARK 3 L33: 4.5257 L12: -0.1878 REMARK 3 L13: -1.2353 L23: 0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: 0.1934 S13: -0.1884 REMARK 3 S21: -0.3162 S22: 0.0029 S23: 0.4940 REMARK 3 S31: -0.0600 S32: -0.4620 S33: 0.1166 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 38.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.99100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 30% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.45050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.78800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.96300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.45050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.78800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.96300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.45050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.78800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.96300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.45050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.78800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.96300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 GLY C 141 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 14 CG OD1 ND2 REMARK 470 LYS C 117 CE NZ REMARK 470 ILE C 140 CG1 CG2 CD1 REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC A 19 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 20 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 29 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 12 OP1 REMARK 620 2 HOH A 208 O 89.5 REMARK 620 3 HOH A 209 O 117.0 135.3 REMARK 620 4 HOH B 204 O 91.3 66.3 77.1 REMARK 620 5 HOH C 413 O 157.7 70.2 75.0 72.4 REMARK 620 6 HOH C 415 O 112.0 81.1 115.9 139.9 74.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 206 O REMARK 620 2 HOH A 207 O 86.4 REMARK 620 3 HOH B 201 O 66.7 82.6 REMARK 620 4 HOH B 202 O 138.2 81.5 72.0 REMARK 620 5 HOH B 209 O 68.8 144.8 65.0 100.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 201 O REMARK 620 2 HOH A 202 O 91.3 REMARK 620 3 HOH A 204 O 66.1 91.5 REMARK 620 4 GLU C 77 OE2 81.7 172.4 83.0 REMARK 620 5 ASP C 81 OD1 95.2 89.7 161.3 93.8 REMARK 620 6 HOH C 402 O 126.6 115.1 67.6 67.6 128.1 REMARK 620 7 HOH C 403 O 159.1 78.1 131.3 109.5 67.1 74.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 206 O REMARK 620 2 HOH B 210 O 63.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS THE STARTING MODEL AND CONTAINS THE SAME PROTEIN COMPLEXED REMARK 900 TO A SYMMETRIC DSDNA DUPLEX REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED WITH A 21MER DUPLEX. DBREF 7UOG A 0 30 PDB 7UOG 7UOG 0 30 DBREF 7UOG B 12 42 PDB 7UOG 7UOG 12 42 DBREF 7UOG C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 7UOG MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7UOG ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7UOG GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7UOG SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7UOG HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7UOG GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7UOG SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7UOG PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 31 DA DC DC DT DG DT DG DA DC DA DA DA DT SEQRES 2 A 31 DT DG DC DC DC DT DC DA DG DA DC DC DC SEQRES 3 A 31 DG DC DC DT DT SEQRES 1 B 31 DG DT DA DA DG DG DC DG DG DG DT DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG A 101 1 HET MG A 102 1 HET MG B 101 1 HET MG C 301 1 HET MG C 302 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 5(MG 2+) FORMUL 9 HOH *36(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 LEU C 135 ILE C 140 1 6 HELIX 6 AA6 SER C 152 THR C 154 5 3 HELIX 7 AA7 ASN C 159 GLN C 171 1 13 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 ILE C 131 -1 O TYR C 127 N ILE C 62 SHEET 3 AA2 3 PHE C 115 HIS C 120 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK OP1 DT A 12 MG MG A 101 1555 1555 2.51 LINK MG MG A 101 O HOH A 208 1555 1555 2.30 LINK MG MG A 101 O HOH A 209 1555 1555 2.25 LINK MG MG A 101 O HOH B 204 1555 1555 2.72 LINK MG MG A 101 O HOH C 413 1555 1555 2.57 LINK MG MG A 101 O HOH C 415 1555 1555 2.23 LINK MG MG A 102 O HOH A 206 1555 1555 2.69 LINK MG MG A 102 O HOH A 207 1555 1555 2.27 LINK MG MG A 102 O HOH B 201 1555 1555 2.44 LINK MG MG A 102 O HOH B 202 1555 1555 2.46 LINK MG MG A 102 O HOH B 209 1555 1555 2.56 LINK O HOH A 201 MG MG C 301 1555 1555 2.53 LINK O HOH A 202 MG MG C 301 1555 1555 2.27 LINK O HOH A 204 MG MG C 301 1555 1555 2.25 LINK MG MG B 101 O HOH B 206 1555 1555 2.16 LINK MG MG B 101 O HOH B 210 1555 4555 2.53 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.35 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.08 LINK MG MG C 301 O HOH C 402 1555 1555 1.99 LINK MG MG C 301 O HOH C 403 1555 1555 2.51 CRYST1 74.901 131.576 135.926 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013351 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007357 0.00000