HEADER HYDROLASE/HYDROLASE INHIBITOR 14-APR-22 7UOX TITLE NDM1-INHIBITOR CO-STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METALLO-BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE,NDM-1, COMPND 5 METALLOBETALACTAMASE NDM-1,NDM1 METALLO-BETA-LACTAMASE,NEW DELHI COMPND 6 METALLO CARBAPENEMASE-1,NEW DELHI METALLO BETA LACTAMASE 1,NEW DELHI COMPND 7 METALLO-BETA-LACTAMASE NDM-1,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM- COMPND 8 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1, BLA NDM-1, BLANDM1, NDM-1, D647_P47098, DDJ63_29735, SOURCE 5 EC13450_007, NCTC13443_00040, P2146_00143, PCRE380_21, SOURCE 6 PN11X00042NDM_090, PNDM-SX04_5, PNDM10469_138, SAMEA3499901_05193, SOURCE 7 TR3_031, TR4_031; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SCAPIN,T.O.FISCHMANN REVDAT 2 25-OCT-23 7UOX 1 REMARK REVDAT 1 08-MAR-23 7UOX 0 JRNL AUTH M.MANDAL,L.XIAO,W.PAN,G.SCAPIN,G.LI,H.TANG,S.W.YANG,J.PAN, JRNL AUTH 2 Y.ROOT,R.K.DE JESUS,C.YANG,W.PROSISE,P.DAYANANTH,A.MIRZA, JRNL AUTH 3 A.G.THERIEN,K.YOUNG,A.FLATTERY,C.GARLISI,R.ZHANG,D.CHU, JRNL AUTH 4 P.SHETH,I.CHU,J.WU,C.MARKGRAF,H.Y.KIM,R.PAINTER,T.W.MAYHOOD, JRNL AUTH 5 E.DINUNZIO,D.F.WYSS,A.V.BUEVICH,T.FISCHMANN,A.PASTERNAK, JRNL AUTH 6 S.DONG,J.D.HICKS,A.VILLAFANIA,L.LIANG,N.MURGOLO,T.BLACK, JRNL AUTH 7 W.K.HAGMANN,J.TATA,E.R.PARMEE,A.E.WEBER,J.SU,H.TANG JRNL TITL RAPID EVOLUTION OF A FRAGMENT-LIKE MOLECULE TO JRNL TITL 2 PAN-METALLO-BETA-LACTAMASE INHIBITORS: INITIAL LEADS TOWARD JRNL TITL 3 CLINICAL CANDIDATES. JRNL REF J.MED.CHEM. V. 65 16234 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36475645 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00766 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 217086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 10920 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 13561 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1578 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12854 REMARK 3 BIN R VALUE (WORKING SET) : 0.1572 REMARK 3 BIN FREE R VALUE : 0.1700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.21 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 707 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50570 REMARK 3 B22 (A**2) : -0.06820 REMARK 3 B33 (A**2) : -0.43750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.097 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.022 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.023 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.021 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.021 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3853 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5285 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1288 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 107 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 605 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3853 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 520 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5257 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.12 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.0373 10.8095 15.0590 REMARK 3 T TENSOR REMARK 3 T11: -0.0053 T22: -0.0137 REMARK 3 T33: -0.0143 T12: -0.0008 REMARK 3 T13: -0.0024 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3569 L22: 0.3912 REMARK 3 L33: 0.2290 L12: 0.0462 REMARK 3 L13: -0.0096 L23: -0.1031 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0152 S13: 0.0331 REMARK 3 S21: 0.0272 S22: -0.0052 S23: -0.0155 REMARK 3 S31: -0.0282 S32: 0.0100 S33: -0.0011 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -9.8751 -23.5336 17.2499 REMARK 3 T TENSOR REMARK 3 T11: -0.0199 T22: -0.0272 REMARK 3 T33: -0.0296 T12: -0.0046 REMARK 3 T13: -0.0062 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4819 L22: 0.3424 REMARK 3 L33: 0.2999 L12: -0.0202 REMARK 3 L13: 0.0032 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0004 S13: -0.0573 REMARK 3 S21: 0.0039 S22: 0.0010 S23: 0.0101 REMARK 3 S31: 0.0394 S32: -0.0185 S33: 0.0003 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1. REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 217293 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 134.805 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : 0.32200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 3ZR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE 0.1 M SODIUM REMARK 280 ACETATE PH 4.6 20.0 W/V POLYETHYLENE GLYCOL 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 GLU A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 LYS B 25 REMARK 465 LEU B 26 REMARK 465 GLU B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 ARG B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 ARG B 45 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 515 O HOH B 670 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 150 CA - C - N ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO B 150 O - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 144.12 75.31 REMARK 500 HIS A 120 167.08 178.45 REMARK 500 PHE B 70 -42.06 -132.37 REMARK 500 ASP B 90 143.48 75.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 724 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 725 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP A 130 OD2 94.8 REMARK 620 3 HOH A 466 O 90.1 170.2 REMARK 620 4 HOH A 602 O 99.0 84.6 86.3 REMARK 620 5 HOH A 640 O 87.3 94.1 94.6 173.6 REMARK 620 6 HOH A 655 O 167.6 97.3 78.5 85.2 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 102.4 REMARK 620 3 HIS A 189 NE2 105.5 111.6 REMARK 620 4 HOH A 409 O 115.8 108.4 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 ASP A 124 OD2 17.2 REMARK 620 3 CYS A 208 SG 112.3 95.3 REMARK 620 4 HIS A 250 NE2 85.7 88.8 109.0 REMARK 620 5 O0L A 306 N3 131.7 148.8 114.5 89.7 REMARK 620 6 HOH A 409 O 77.5 80.3 93.6 155.8 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 53.5 REMARK 620 3 ASP A 223 OD2 89.5 98.1 REMARK 620 4 GLU B 227 OE1 138.6 85.3 92.6 REMARK 620 5 GLU B 227 OE2 119.2 86.8 146.1 54.1 REMARK 620 6 HOH B 640 O 99.7 144.2 105.5 119.4 88.2 REMARK 620 7 HOH B 640 O 80.3 118.6 121.9 130.9 83.2 25.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 53.9 REMARK 620 3 HOH A 644 O 116.4 87.5 REMARK 620 4 GLU B 152 OE1 141.4 118.4 99.5 REMARK 620 5 GLU B 152 OE2 87.8 85.9 143.5 53.8 REMARK 620 6 ASP B 223 OD2 97.0 150.8 107.3 84.6 95.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 101.9 REMARK 620 3 HOH B 444 O 164.5 89.9 REMARK 620 4 HOH B 459 O 86.2 168.9 83.5 REMARK 620 5 HOH B 480 O 82.2 96.0 86.8 92.5 REMARK 620 6 HOH B 566 O 97.5 87.0 93.0 84.5 177.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 103.7 REMARK 620 3 HIS B 189 NE2 105.2 111.3 REMARK 620 4 HOH B 408 O 115.1 108.9 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 ASP B 124 OD2 19.2 REMARK 620 3 CYS B 208 SG 111.2 92.4 REMARK 620 4 CYS B 208 SG 117.1 98.0 6.9 REMARK 620 5 HIS B 250 NE2 85.4 88.0 109.5 105.7 REMARK 620 6 O0L B 306 N3 132.4 151.6 114.9 109.7 89.9 REMARK 620 7 HOH B 408 O 77.7 81.8 92.9 97.5 155.7 88.8 REMARK 620 N 1 2 3 4 5 6 DBREF 7UOX A 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 DBREF 7UOX B 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 SEQADV 7UOX GLY A 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX SER A 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX LYS A 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX LEU A 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX GLU A 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX PHE A 28 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX GLY B 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX SER B 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX LYS B 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX LEU B 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX GLU B 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UOX PHE B 28 UNP E9NWK5 EXPRESSION TAG SEQRES 1 A 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 A 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 A 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 A 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 A 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 A 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 A 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 A 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 A 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 A 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 A 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 A 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 A 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 A 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 A 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 A 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 A 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 A 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 A 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 A 248 ARG SEQRES 1 B 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 B 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 B 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 B 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 B 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 B 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 B 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 B 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 B 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 B 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 B 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 B 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 B 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 B 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 B 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 B 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 B 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 B 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 B 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 B 248 ARG HET ACT A 301 4 HET CA A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET CD A 305 1 HET O0L A 306 21 HET ACT B 301 4 HET ZN B 302 1 HET ZN B 303 1 HET CD B 304 1 HET CD B 305 1 HET O0L B 306 21 HETNAM ACT ACETATE ION HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM CD CADMIUM ION HETNAM O0L (2M)-4'-(HYDROXYMETHYL)-2-(1H-TETRAZOL-5-YL)[1,1'- HETNAM 2 O0L BIPHENYL]-3-OL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 CA CA 2+ FORMUL 5 ZN 4(ZN 2+) FORMUL 7 CD 3(CD 2+) FORMUL 8 O0L 2(C14 H12 N4 O2) FORMUL 15 HOH *670(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 ALA B 149 1 7 HELIX 12 AB3 PRO B 150 GLY B 153 5 4 HELIX 13 AB4 GLU B 170 ALA B 174 5 5 HELIX 14 AB5 HIS B 228 PHE B 240 1 13 HELIX 15 AB6 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 ASP A 43 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN B 44 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O GLY B 71 N MET B 67 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O VAL B 89 N LEU B 78 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 LINK OD2 ASP A 95 CA CA A 302 1555 1555 2.31 LINK NE2 HIS A 120 ZN ZN A 303 1555 1555 2.01 LINK ND1 HIS A 122 ZN ZN A 303 1555 1555 2.01 LINK OD2AASP A 124 ZN ZN A 304 1555 1555 2.13 LINK OD2BASP A 124 ZN ZN A 304 1555 1555 2.21 LINK OD2 ASP A 130 CA CA A 302 1555 1555 2.36 LINK OE1 GLU A 152 CD CD A 305 1555 1555 2.51 LINK OE2 GLU A 152 CD CD A 305 1555 1555 2.34 LINK NE2 HIS A 189 ZN ZN A 303 1555 1555 2.01 LINK SG CYS A 208 ZN ZN A 304 1555 1555 2.39 LINK OD2 ASP A 223 CD CD A 305 1555 1555 2.26 LINK OE1 GLU A 227 CD CD B 304 1555 1555 2.40 LINK OE2 GLU A 227 CD CD B 304 1555 1555 2.43 LINK NE2 HIS A 250 ZN ZN A 304 1555 1555 2.18 LINK CA CA A 302 O HOH A 466 1555 1555 2.43 LINK CA CA A 302 O HOH A 602 1555 1555 2.49 LINK CA CA A 302 O HOH A 640 1555 1555 2.42 LINK CA CA A 302 O HOH A 655 1555 1555 2.35 LINK ZN ZN A 303 O HOH A 409 1555 1555 1.94 LINK ZN ZN A 304 N3 O0L A 306 1555 1555 2.18 LINK ZN ZN A 304 O HOH A 409 1555 1555 2.57 LINK CD CD A 305 OE1 GLU B 227 1555 1555 2.44 LINK CD CD A 305 OE2 GLU B 227 1555 1555 2.38 LINK CD CD A 305 O AHOH B 640 1555 1555 2.30 LINK CD CD A 305 O BHOH B 640 1555 1555 2.63 LINK O HOH A 644 CD CD B 304 1555 1555 2.36 LINK OD2 ASP B 95 CD CD B 305 1555 1555 2.26 LINK NE2 HIS B 120 ZN ZN B 302 1555 1555 2.01 LINK ND1 HIS B 122 ZN ZN B 302 1555 1555 2.01 LINK OD2AASP B 124 ZN ZN B 303 1555 1555 2.13 LINK OD2BASP B 124 ZN ZN B 303 1555 1555 2.21 LINK OD2 ASP B 130 CD CD B 305 1555 1555 2.24 LINK OE1 GLU B 152 CD CD B 304 1555 1555 2.50 LINK OE2 GLU B 152 CD CD B 304 1555 1555 2.33 LINK NE2 HIS B 189 ZN ZN B 302 1555 1555 2.01 LINK SG ACYS B 208 ZN ZN B 303 1555 1555 2.44 LINK SG BCYS B 208 ZN ZN B 303 1555 1555 2.23 LINK OD2 ASP B 223 CD CD B 304 1555 1555 2.23 LINK NE2 HIS B 250 ZN ZN B 303 1555 1555 2.18 LINK ZN ZN B 302 O HOH B 408 1555 1555 1.94 LINK ZN ZN B 303 N3 O0L B 306 1555 1555 2.19 LINK ZN ZN B 303 O HOH B 408 1555 1555 2.56 LINK CD CD B 305 O HOH B 444 1555 1655 2.30 LINK CD CD B 305 O HOH B 459 1555 1555 2.33 LINK CD CD B 305 O HOH B 480 1555 1655 2.31 LINK CD CD B 305 O HOH B 566 1555 1555 2.35 CRYST1 39.030 78.810 134.810 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007418 0.00000