HEADER HYDROLASE/HYDROLASE INHIBITOR 14-APR-22 7UP3 TITLE NDM1-INHIBITOR CO-STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METALLO-BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE,NDM-1, COMPND 5 METALLOBETALACTAMASE NDM-1,NDM1 METALLO-BETA-LACTAMASE,NEW DELHI COMPND 6 METALLO CARBAPENEMASE-1,NEW DELHI METALLO BETA LACTAMASE 1,NEW DELHI COMPND 7 METALLO-BETA-LACTAMASE NDM-1,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM- COMPND 8 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1, BLA NDM-1, BLANDM1, NDM-1, D647_P47098, DDJ63_29735, SOURCE 5 EC13450_007, NCTC13443_00040, P2146_00143, PCRE380_21, SOURCE 6 PN11X00042NDM_090, PNDM-SX04_5, PNDM10469_138, SAMEA3499901_05193, SOURCE 7 TR3_031, TR4_031; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLO-BETA-LACTAMASE INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.SCAPIN,T.O.FISCHMANN REVDAT 2 25-OCT-23 7UP3 1 REMARK REVDAT 1 08-MAR-23 7UP3 0 JRNL AUTH M.MANDAL,L.XIAO,W.PAN,G.SCAPIN,G.LI,H.TANG,S.W.YANG,J.PAN, JRNL AUTH 2 Y.ROOT,R.K.DE JESUS,C.YANG,W.PROSISE,P.DAYANANTH,A.MIRZA, JRNL AUTH 3 A.G.THERIEN,K.YOUNG,A.FLATTERY,C.GARLISI,R.ZHANG,D.CHU, JRNL AUTH 4 P.SHETH,I.CHU,J.WU,C.MARKGRAF,H.Y.KIM,R.PAINTER,T.W.MAYHOOD, JRNL AUTH 5 E.DINUNZIO,D.F.WYSS,A.V.BUEVICH,T.FISCHMANN,A.PASTERNAK, JRNL AUTH 6 S.DONG,J.D.HICKS,A.VILLAFANIA,L.LIANG,N.MURGOLO,T.BLACK, JRNL AUTH 7 W.K.HAGMANN,J.TATA,E.R.PARMEE,A.E.WEBER,J.SU,H.TANG JRNL TITL RAPID EVOLUTION OF A FRAGMENT-LIKE MOLECULE TO JRNL TITL 2 PAN-METALLO-BETA-LACTAMASE INHIBITORS: INITIAL LEADS TOWARD JRNL TITL 3 CLINICAL CANDIDATES. JRNL REF J.MED.CHEM. V. 65 16234 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36475645 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00766 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 76421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3839 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5082 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1934 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4827 REMARK 3 BIN R VALUE (WORKING SET) : 0.1932 REMARK 3 BIN FREE R VALUE : 0.1977 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 255 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.87330 REMARK 3 B22 (A**2) : 3.84720 REMARK 3 B33 (A**2) : 1.02610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.171 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.065 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.061 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.063 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.060 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3536 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4825 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1138 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 91 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 540 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3536 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 465 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4312 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.13 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.1832 3.3328 -5.7768 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.0699 REMARK 3 T33: -0.0869 T12: -0.0097 REMARK 3 T13: -0.0221 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.6639 L22: 3.3249 REMARK 3 L33: 0.4084 L12: 0.0749 REMARK 3 L13: -0.0268 L23: -0.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0219 S12: -0.0120 S13: -0.0915 REMARK 3 S21: 0.4622 S22: -0.0708 S23: -0.1095 REMARK 3 S31: 0.0048 S32: 0.0244 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -18.8215 35.6515 -18.0533 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: -0.0118 REMARK 3 T33: -0.0468 T12: 0.0021 REMARK 3 T13: -0.0029 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.3459 L22: 1.5731 REMARK 3 L33: 0.6734 L12: -0.0886 REMARK 3 L13: 0.1029 L23: -0.0057 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0158 S13: 0.0439 REMARK 3 S21: 0.0388 S22: -0.0191 S23: -0.0282 REMARK 3 S31: -0.0405 S32: 0.0052 S33: 0.0275 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1. REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.113 REMARK 200 RESOLUTION RANGE LOW (A) : 134.175 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : 0.56200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: 3ZR9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE 1.0 MM TCEP 3.0 REMARK 280 MM CADMIUM SULFATE 0.1 M HEPES PH 7.0 25.0 W/V POLYETHYLENE REMARK 280 GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.78200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.66250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.66250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.78200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.95650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 LYS A 25 REMARK 465 LEU A 26 REMARK 465 GLU A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 ARG A 270 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 LYS B 25 REMARK 465 LEU B 26 REMARK 465 GLU B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 ILE B 31 REMARK 465 ARG B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 68 -32.57 -30.65 REMARK 500 ASP A 90 145.79 75.10 REMARK 500 HIS A 120 167.07 178.60 REMARK 500 ASP B 90 144.84 72.89 REMARK 500 ALA B 174 73.91 -108.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP A 130 OD2 101.7 REMARK 620 3 HOH A 403 O 164.8 91.1 REMARK 620 4 HOH A 468 O 85.7 90.4 86.0 REMARK 620 5 HOH A 496 O 96.7 89.0 91.7 177.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 96.6 REMARK 620 3 HIS A 189 NE2 102.6 110.6 REMARK 620 4 NZ0 A 305 S 152.1 83.1 103.6 REMARK 620 5 NZ0 A 305 N4 124.5 104.2 116.4 31.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 105.5 REMARK 620 3 HIS A 250 NE2 82.7 105.8 REMARK 620 4 NZ0 A 305 N4 84.2 107.0 146.8 REMARK 620 5 NZ0 A 305 N3 142.8 111.3 82.2 90.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 55.1 REMARK 620 3 ASP A 223 OD2 89.5 98.2 REMARK 620 4 HOH A 513 O 87.6 136.9 102.4 REMARK 620 5 GLU B 227 OE1 140.8 87.5 84.3 131.6 REMARK 620 6 GLU B 227 OE2 127.0 89.6 138.3 99.1 55.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 227 OE1 REMARK 620 2 GLU A 227 OE2 55.6 REMARK 620 3 GLU B 152 OE1 142.1 118.5 REMARK 620 4 GLU B 152 OE2 87.2 85.2 55.3 REMARK 620 5 ASP B 223 OD2 85.5 140.9 93.9 97.6 REMARK 620 6 HOH B 539 O 132.8 103.8 84.7 137.0 100.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 100.9 REMARK 620 3 HOH B 473 O 81.5 173.1 REMARK 620 4 HOH B 484 O 97.8 92.9 80.3 REMARK 620 5 HOH B 550 O 161.1 95.5 83.3 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 97.0 REMARK 620 3 HIS B 189 NE2 101.2 110.7 REMARK 620 4 NZ0 B 305 S 151.4 83.0 105.5 REMARK 620 5 NZ0 B 305 N4 124.8 104.1 117.0 30.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 103.6 REMARK 620 3 HIS B 250 NE2 83.8 105.9 REMARK 620 4 NZ0 B 305 N3 146.1 110.2 84.1 REMARK 620 5 NZ0 B 305 N4 84.8 107.7 146.2 87.8 REMARK 620 N 1 2 3 4 DBREF 7UP3 A 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 DBREF 7UP3 B 29 270 UNP E9NWK5 E9NWK5_KLEPN 29 270 SEQADV 7UP3 GLY A 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 SER A 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 LYS A 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 LEU A 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 GLU A 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 PHE A 28 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 GLY B 23 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 SER B 24 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 LYS B 25 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 LEU B 26 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 GLU B 27 UNP E9NWK5 EXPRESSION TAG SEQADV 7UP3 PHE B 28 UNP E9NWK5 EXPRESSION TAG SEQRES 1 A 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 A 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 A 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 A 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 A 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 A 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 A 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 A 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 A 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 A 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 A 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 A 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 A 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 A 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 A 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 A 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 A 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 A 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 A 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 A 248 ARG SEQRES 1 B 248 GLY SER LYS LEU GLU PHE GLY GLU ILE ARG PRO THR ILE SEQRES 2 B 248 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 3 B 248 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 4 B 248 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 5 B 248 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 6 B 248 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 7 B 248 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 8 B 248 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 9 B 248 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 10 B 248 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 11 B 248 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 12 B 248 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 13 B 248 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 14 B 248 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 15 B 248 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 16 B 248 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 17 B 248 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 18 B 248 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 19 B 248 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 20 B 248 ARG HET CD A 301 1 HET CD A 302 1 HET ZN A 303 1 HET CD A 304 1 HET NZ0 A 305 23 HET CD B 301 1 HET CD B 302 1 HET ZN B 303 1 HET CD B 304 1 HET NZ0 B 305 23 HET EPE B 306 15 HETNAM CD CADMIUM ION HETNAM ZN ZINC ION HETNAM NZ0 (3P)-4-[4-(HYDROXYMETHYL)PHENYL]-3-(2H-TETRAZOL-5-YL) HETNAM 2 NZ0 PYRIDINE-2-SULFONAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 CD 6(CD 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 NZ0 2(C13 H12 N6 O3 S) FORMUL 13 EPE C8 H18 N2 O4 S FORMUL 14 HOH *311(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 GLY A 153 1 11 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 GLY B 153 1 11 HELIX 12 AB3 GLU B 170 ALA B 174 5 5 HELIX 13 AB4 HIS B 228 PHE B 240 1 13 HELIX 14 AB5 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O ARG A 85 N ASP A 82 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 PHE A 205 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 VAL A 247 1 O VAL A 247 N ALA A 204 SHEET 1 AA3 8 ASP B 43 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O GLY B 71 N MET B 67 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O ARG B 85 N ASP B 82 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206 LINK OD2 ASP A 95 CD CD A 302 1555 1555 2.30 LINK NE2 HIS A 120 ZN ZN A 303 1555 1555 2.10 LINK ND1 HIS A 122 ZN ZN A 303 1555 1555 2.09 LINK OD2 ASP A 124 CD CD A 304 1555 1555 2.17 LINK OD2 ASP A 130 CD CD A 302 1555 1555 2.23 LINK OE1 GLU A 152 CD CD A 301 1555 1555 2.47 LINK OE2 GLU A 152 CD CD A 301 1555 1555 2.26 LINK NE2 HIS A 189 ZN ZN A 303 1555 1555 2.04 LINK SG CYS A 208 CD CD A 304 1555 1555 2.48 LINK OD2 ASP A 223 CD CD A 301 1555 1555 2.31 LINK OE1 GLU A 227 CD CD B 301 1555 1555 2.41 LINK OE2 GLU A 227 CD CD B 301 1555 1555 2.29 LINK NE2 HIS A 250 CD CD A 304 1555 1555 2.27 LINK CD CD A 301 O HOH A 513 1555 1555 2.29 LINK CD CD A 301 OE1 GLU B 227 1555 1555 2.44 LINK CD CD A 301 OE2 GLU B 227 1555 1555 2.30 LINK CD CD A 302 O HOH A 403 1555 2454 2.30 LINK CD CD A 302 O HOH A 468 1555 2454 2.30 LINK CD CD A 302 O HOH A 496 1555 1555 2.35 LINK ZN ZN A 303 S NZ0 A 305 1555 1555 2.95 LINK ZN ZN A 303 N4 NZ0 A 305 1555 1555 2.05 LINK CD CD A 304 N4 NZ0 A 305 1555 1555 2.47 LINK CD CD A 304 N3 NZ0 A 305 1555 1555 2.23 LINK OD2 ASP B 95 CD CD B 302 1555 1555 2.32 LINK NE2 HIS B 120 ZN ZN B 303 1555 1555 2.07 LINK ND1 HIS B 122 ZN ZN B 303 1555 1555 2.08 LINK OD2 ASP B 124 CD CD B 304 1555 1555 2.18 LINK OD2 ASP B 130 CD CD B 302 1555 1555 2.35 LINK OE1 GLU B 152 CD CD B 301 1555 1555 2.46 LINK OE2 GLU B 152 CD CD B 301 1555 1555 2.27 LINK NE2 HIS B 189 ZN ZN B 303 1555 1555 2.06 LINK SG CYS B 208 CD CD B 304 1555 1555 2.48 LINK OD2 ASP B 223 CD CD B 301 1555 1555 2.20 LINK NE2 HIS B 250 CD CD B 304 1555 1555 2.28 LINK CD CD B 301 O HOH B 539 1555 1555 2.35 LINK CD CD B 302 O HOH B 473 1555 1555 2.29 LINK CD CD B 302 O HOH B 484 1555 1555 2.35 LINK CD CD B 302 O HOH B 550 1555 1555 2.43 LINK ZN ZN B 303 S NZ0 B 305 1555 1555 2.99 LINK ZN ZN B 303 N4 NZ0 B 305 1555 1555 2.07 LINK CD CD B 304 N3 NZ0 B 305 1555 1555 2.25 LINK CD CD B 304 N4 NZ0 B 305 1555 1555 2.44 CRYST1 69.564 73.913 77.325 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012932 0.00000