HEADER DNA BINDING PROTEIN/DNA 18-APR-22 7UPZ TITLE STRUCTURAL BASIS FOR CELL TYPE SPECIFIC DNA BINDING OF C/EBPBETA: THE TITLE 2 CASE OF CELL CYCLE INHIBITOR P15INK4B PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCAAT/ENHANCER-BINDING PROTEIN BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 257-336; COMPND 5 SYNONYM: C/EBP BETA,LIVER ACTIVATOR PROTEIN,LAP,LIVER-ENRICHED COMPND 6 INHIBITORY PROTEIN,LIP,NUCLEAR FACTOR NF-IL6,TRANSCRIPTION FACTOR 5, COMPND 7 TCF-5; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*AP*TP*TP*CP*TP*TP*AP*AP*GP*AP*AP*AP*GP*AP*CP*G)- COMPND 11 3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*TP*CP*GP*TP*CP*TP*TP*TP*CP*TP*TP*AP*AP*GP*AP*A)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEBPB, TCF5, PP9092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJT328; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS C/EBPBETA-DNA INTERACTIONS, DNA SEQUENCE MOTIF, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.T.LOUNTOS,S.CHERRY,J.E.TROPEA,A.WLODAWER,M.MILLER REVDAT 2 18-OCT-23 7UPZ 1 REMARK REVDAT 1 23-NOV-22 7UPZ 0 JRNL AUTH G.T.LOUNTOS,S.CHERRY,J.E.TROPEA,A.WLODAWER,M.MILLER JRNL TITL STRUCTURAL BASIS FOR CELL TYPE SPECIFIC DNA BINDING OF C/EBP JRNL TITL 2 BETA : THE CASE OF CELL CYCLE INHIBITOR P15INK4B PROMOTER. JRNL REF J.STRUCT.BIOL. V. 214 07918 2022 JRNL REFN ESSN 1095-8657 JRNL PMID 36343842 JRNL DOI 10.1016/J.JSB.2022.107918 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 14452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.470 REMARK 3 FREE R VALUE TEST SET COUNT : 790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1800 - 4.5175 0.99 2519 174 0.1743 0.2235 REMARK 3 2 4.5175 - 3.5863 0.99 2458 109 0.1784 0.2392 REMARK 3 3 3.5863 - 3.1331 0.98 2413 124 0.2196 0.2634 REMARK 3 4 3.1331 - 2.8467 1.00 2418 151 0.2621 0.3236 REMARK 3 5 2.8467 - 2.6427 0.99 2398 143 0.2778 0.3088 REMARK 3 6 2.6427 - 2.4870 0.61 1456 89 0.3150 0.3450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2749 4.2122 -3.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.3043 T22: 0.1772 REMARK 3 T33: 0.2071 T12: -0.0083 REMARK 3 T13: 0.1004 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.7830 L22: 6.3874 REMARK 3 L33: 4.9178 L12: -3.0188 REMARK 3 L13: -2.4024 L23: 5.8076 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.3906 S13: 0.2291 REMARK 3 S21: -0.1751 S22: 0.5215 S23: -0.7766 REMARK 3 S31: -0.2061 S32: 0.4655 S33: -0.4012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 268 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9430 47.2315 -1.2365 REMARK 3 T TENSOR REMARK 3 T11: 1.2800 T22: 0.8882 REMARK 3 T33: 1.1247 T12: -0.3332 REMARK 3 T13: -0.0152 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 7.1036 L22: 6.1035 REMARK 3 L33: 3.8910 L12: -2.5074 REMARK 3 L13: 5.2112 L23: -1.2440 REMARK 3 S TENSOR REMARK 3 S11: -0.7960 S12: -0.7818 S13: 2.1821 REMARK 3 S21: 1.7607 S22: -0.9802 S23: -0.2076 REMARK 3 S31: -2.4965 S32: 0.0458 S33: 1.7385 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 273 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6445 1.5762 -13.1410 REMARK 3 T TENSOR REMARK 3 T11: 0.2833 T22: -0.1542 REMARK 3 T33: 0.1901 T12: 0.0634 REMARK 3 T13: 0.1868 T23: -0.0964 REMARK 3 L TENSOR REMARK 3 L11: 0.4222 L22: 6.1147 REMARK 3 L33: 0.5228 L12: 0.8100 REMARK 3 L13: 0.1830 L23: 0.6232 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.2344 S13: 0.1082 REMARK 3 S21: -0.0712 S22: -0.1329 S23: 0.4378 REMARK 3 S31: -0.0453 S32: 0.2011 S33: -0.0570 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6545 29.8689 -7.3059 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.4017 REMARK 3 T33: 0.4553 T12: 0.1039 REMARK 3 T13: 0.0812 T23: 0.2278 REMARK 3 L TENSOR REMARK 3 L11: 5.7351 L22: 0.2448 REMARK 3 L33: 2.2140 L12: -1.1812 REMARK 3 L13: 0.8174 L23: -0.2246 REMARK 3 S TENSOR REMARK 3 S11: -0.2850 S12: 0.0722 S13: 0.8932 REMARK 3 S21: -0.0182 S22: -0.0970 S23: -0.5914 REMARK 3 S31: -0.0056 S32: 0.5245 S33: 0.0967 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4405 28.1047 2.6712 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.4417 REMARK 3 T33: 0.2939 T12: -0.0948 REMARK 3 T13: 0.2184 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 6.5695 L22: 5.2275 REMARK 3 L33: 5.0407 L12: -4.1407 REMARK 3 L13: -0.6775 L23: 3.3626 REMARK 3 S TENSOR REMARK 3 S11: -0.3497 S12: -0.7595 S13: -0.0024 REMARK 3 S21: 0.0498 S22: -0.0776 S23: 0.1298 REMARK 3 S31: 0.7760 S32: -0.1463 S33: 0.0510 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4815 29.7587 -2.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.3911 T22: 0.8854 REMARK 3 T33: 0.5720 T12: -0.1030 REMARK 3 T13: -0.0916 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 4.7468 L22: 5.7208 REMARK 3 L33: 5.4969 L12: 5.0703 REMARK 3 L13: -0.9674 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.5708 S12: 0.9859 S13: 0.8630 REMARK 3 S21: -1.4210 S22: 0.2627 S23: 1.5648 REMARK 3 S31: 0.1446 S32: -1.6091 S33: 0.2720 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4326 20.5312 1.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.6065 T22: 1.4608 REMARK 3 T33: 1.2306 T12: -0.1837 REMARK 3 T13: 0.4383 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 8.1697 L22: 1.9999 REMARK 3 L33: 9.2161 L12: -1.0326 REMARK 3 L13: 8.4516 L23: -2.4877 REMARK 3 S TENSOR REMARK 3 S11: -0.5970 S12: 3.3021 S13: -2.0841 REMARK 3 S21: -1.8075 S22: -0.2782 S23: -1.8998 REMARK 3 S31: 0.6719 S32: 0.2705 S33: 0.9052 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0330 26.7267 6.7368 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.9576 REMARK 3 T33: 0.6770 T12: -0.2482 REMARK 3 T13: -0.0031 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 3.0517 L22: 0.9882 REMARK 3 L33: 0.8923 L12: -0.5590 REMARK 3 L13: 0.2317 L23: 0.3431 REMARK 3 S TENSOR REMARK 3 S11: -0.1728 S12: -0.2627 S13: 0.6747 REMARK 3 S21: 0.0237 S22: -0.0922 S23: 0.5379 REMARK 3 S31: 0.0201 S32: -0.4307 S33: -0.5508 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4616 29.1099 -1.7336 REMARK 3 T TENSOR REMARK 3 T11: 0.4889 T22: 0.2830 REMARK 3 T33: 0.1343 T12: 0.0642 REMARK 3 T13: 0.0801 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 8.2831 L22: 3.2023 REMARK 3 L33: 4.8538 L12: 2.1178 REMARK 3 L13: -3.4817 L23: -1.7798 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: -0.2741 S13: 0.2075 REMARK 3 S21: 0.2734 S22: -0.1589 S23: -0.1238 REMARK 3 S31: 0.2077 S32: 0.2863 S33: 0.0923 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.487 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GTW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM POTASSIUM CHLORIDE, 10 MM REMARK 280 MAGNESIUM CHLORIDE, 50 MM MES, PH 6.0, 10% V/V PEG400, 5% V/V REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.76400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.76400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.84950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.37900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.84950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.37900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.76400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.84950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.37900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.76400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.84950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.37900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 257 REMARK 465 GLN A 258 REMARK 465 VAL A 259 REMARK 465 LYS A 260 REMARK 465 SER A 261 REMARK 465 LYS A 262 REMARK 465 ALA A 263 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 THR A 266 REMARK 465 VAL A 267 REMARK 465 ASP A 268 REMARK 465 GLN A 333 REMARK 465 LEU A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 SER B 257 REMARK 465 GLN B 258 REMARK 465 VAL B 259 REMARK 465 LYS B 260 REMARK 465 SER B 261 REMARK 465 LYS B 262 REMARK 465 ALA B 263 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 THR B 266 REMARK 465 VAL B 267 REMARK 465 GLU B 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 268 CG OD1 OD2 REMARK 470 LYS B 293 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 118 O HOH D 117 2.18 REMARK 500 OP2 DT D 10 O HOH D 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 270 35.15 -86.44 REMARK 500 SER A 271 -162.17 -74.86 REMARK 500 SER B 271 -150.30 -76.82 REMARK 500 GLN B 333 31.51 -96.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 7UPZ A 257 336 UNP P17676 CEBPB_HUMAN 257 336 DBREF 7UPZ B 257 336 UNP P17676 CEBPB_HUMAN 257 336 DBREF 7UPZ C 1 16 PDB 7UPZ 7UPZ 1 16 DBREF 7UPZ D 1 16 PDB 7UPZ 7UPZ 1 16 SEQRES 1 A 80 SER GLN VAL LYS SER LYS ALA LYS LYS THR VAL ASP LYS SEQRES 2 A 80 HIS SER ASP GLU TYR LYS ILE ARG ARG GLU ARG ASN ASN SEQRES 3 A 80 ILE ALA VAL ARG LYS SER ARG ASP LYS ALA LYS MET ARG SEQRES 4 A 80 ASN LEU GLU THR GLN HIS LYS VAL LEU GLU LEU THR ALA SEQRES 5 A 80 GLU ASN GLU ARG LEU GLN LYS LYS VAL GLU GLN LEU SER SEQRES 6 A 80 ARG GLU LEU SER THR LEU ARG ASN LEU PHE LYS GLN LEU SEQRES 7 A 80 PRO GLU SEQRES 1 B 80 SER GLN VAL LYS SER LYS ALA LYS LYS THR VAL ASP LYS SEQRES 2 B 80 HIS SER ASP GLU TYR LYS ILE ARG ARG GLU ARG ASN ASN SEQRES 3 B 80 ILE ALA VAL ARG LYS SER ARG ASP LYS ALA LYS MET ARG SEQRES 4 B 80 ASN LEU GLU THR GLN HIS LYS VAL LEU GLU LEU THR ALA SEQRES 5 B 80 GLU ASN GLU ARG LEU GLN LYS LYS VAL GLU GLN LEU SER SEQRES 6 B 80 ARG GLU LEU SER THR LEU ARG ASN LEU PHE LYS GLN LEU SEQRES 7 B 80 PRO GLU SEQRES 1 C 16 DA DT DT DC DT DT DA DA DG DA DA DA DG SEQRES 2 C 16 DA DC DG SEQRES 1 D 16 DT DC DG DT DC DT DT DT DC DT DT DA DA SEQRES 2 D 16 DG DA DA FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 ASP A 272 ASN A 329 1 58 HELIX 2 AA2 LEU A 330 LYS A 332 5 3 HELIX 3 AA3 ASP B 272 GLN B 333 1 62 CRYST1 101.699 112.758 75.528 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013240 0.00000