HEADER DNA BINDING PROTEIN/DNA 20-APR-22 7UR0 TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SCAFFOLD-INSERT DUPLEXES (21MER AND 10MER) TITLE 3 CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL T-A RICH TITLE 4 SEQUENCE, RESPECTIVELY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(A*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(A*GP*AP*CP*GP*GP*TP*AP*AP*TP*T)-3'); COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: DNA (5'-D(A*GP*TP*AP*AP*TP*TP*AP*CP*CP*G)-3'); COMPND 25 CHAIN: F; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 MOL_ID: 5; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 23 ORGANISM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,C.D.SNOW REVDAT 3 01-NOV-23 7UR0 1 JRNL REVDAT 2 25-OCT-23 7UR0 1 REMARK REVDAT 1 26-APR-23 7UR0 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 9825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6100 - 6.3100 0.99 1347 149 0.2053 0.2135 REMARK 3 2 6.3000 - 5.0100 0.98 1268 141 0.2331 0.2886 REMARK 3 3 5.0100 - 4.3800 0.98 1269 133 0.2225 0.2436 REMARK 3 4 4.3800 - 3.9800 0.97 1242 141 0.2202 0.3452 REMARK 3 5 3.9800 - 3.6900 0.98 1239 132 0.2585 0.3244 REMARK 3 6 3.6900 - 3.4700 1.00 1266 142 0.2559 0.3506 REMARK 3 7 3.4700 - 3.3000 0.96 1221 135 0.2591 0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.432 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.984 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3264 REMARK 3 ANGLE : 0.775 4678 REMARK 3 CHIRALITY : 0.049 508 REMARK 3 PLANARITY : 0.006 381 REMARK 3 DIHEDRAL : 28.013 860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7573 -14.0803 -4.9582 REMARK 3 T TENSOR REMARK 3 T11: 0.9698 T22: 0.6618 REMARK 3 T33: 1.0440 T12: 0.2558 REMARK 3 T13: 0.2670 T23: -0.5236 REMARK 3 L TENSOR REMARK 3 L11: 3.2209 L22: 2.3912 REMARK 3 L33: 3.2901 L12: -1.4087 REMARK 3 L13: -2.9448 L23: 1.4734 REMARK 3 S TENSOR REMARK 3 S11: 0.2075 S12: -0.1053 S13: 0.5627 REMARK 3 S21: 0.0949 S22: 0.1004 S23: -0.9225 REMARK 3 S31: -0.2847 S32: 0.1203 S33: -0.4508 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5060 -33.9770 -28.0644 REMARK 3 T TENSOR REMARK 3 T11: 1.4045 T22: 1.3614 REMARK 3 T33: 1.1866 T12: 0.5044 REMARK 3 T13: 0.6163 T23: -0.7256 REMARK 3 L TENSOR REMARK 3 L11: 0.4691 L22: 0.5568 REMARK 3 L33: 1.1834 L12: 0.2206 REMARK 3 L13: 0.5429 L23: 0.5186 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: 0.5424 S13: -0.2370 REMARK 3 S21: -0.7566 S22: -0.1931 S23: -0.4826 REMARK 3 S31: 0.3223 S32: 0.3949 S33: -0.1659 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4723 -40.5418 -30.9455 REMARK 3 T TENSOR REMARK 3 T11: 1.3537 T22: 1.1450 REMARK 3 T33: 1.2587 T12: 0.1330 REMARK 3 T13: 0.3294 T23: -0.8201 REMARK 3 L TENSOR REMARK 3 L11: 2.9101 L22: 6.1997 REMARK 3 L33: 2.0628 L12: -1.3782 REMARK 3 L13: -0.8589 L23: 1.2889 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: 0.1054 S13: 0.1526 REMARK 3 S21: -0.0056 S22: 0.0322 S23: -0.1348 REMARK 3 S31: -0.2846 S32: 0.0406 S33: -0.1638 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2707 -17.1016 -11.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.8909 T22: 0.5856 REMARK 3 T33: 0.6603 T12: 0.0543 REMARK 3 T13: 0.5066 T23: -0.3419 REMARK 3 L TENSOR REMARK 3 L11: 3.9127 L22: 3.7464 REMARK 3 L33: 2.8574 L12: -0.5734 REMARK 3 L13: -0.2373 L23: 0.7997 REMARK 3 S TENSOR REMARK 3 S11: 0.1466 S12: 0.0766 S13: 0.7594 REMARK 3 S21: -0.2512 S22: 0.1151 S23: -0.5044 REMARK 3 S31: -0.6349 S32: -0.4861 S33: -0.2270 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7840 -47.7898 -14.3364 REMARK 3 T TENSOR REMARK 3 T11: 0.7870 T22: 0.5275 REMARK 3 T33: 0.9119 T12: 0.0477 REMARK 3 T13: 0.2153 T23: -0.6334 REMARK 3 L TENSOR REMARK 3 L11: 1.9525 L22: 1.8911 REMARK 3 L33: 4.4184 L12: -0.5209 REMARK 3 L13: -0.4614 L23: 1.2440 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.3286 S13: -0.7969 REMARK 3 S21: -0.6876 S22: 0.0026 S23: 0.1801 REMARK 3 S31: 0.6348 S32: -0.0194 S33: 0.6892 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1018 -48.4570 -6.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.4665 T22: 0.3916 REMARK 3 T33: 1.2989 T12: 0.0368 REMARK 3 T13: -0.1016 T23: -0.3320 REMARK 3 L TENSOR REMARK 3 L11: 1.5740 L22: 2.5205 REMARK 3 L33: 5.1054 L12: 0.5008 REMARK 3 L13: 0.9260 L23: -1.5948 REMARK 3 S TENSOR REMARK 3 S11: 0.1986 S12: -0.1236 S13: -0.4305 REMARK 3 S21: -0.4970 S22: 0.2639 S23: -0.3913 REMARK 3 S31: 0.7387 S32: 0.6283 S33: -0.3799 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2045 -38.7668 -5.0438 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.4298 REMARK 3 T33: 0.8567 T12: -0.0327 REMARK 3 T13: 0.2484 T23: -0.3227 REMARK 3 L TENSOR REMARK 3 L11: 2.6842 L22: 2.6911 REMARK 3 L33: 2.4210 L12: -0.3948 REMARK 3 L13: -0.1356 L23: -0.6684 REMARK 3 S TENSOR REMARK 3 S11: 0.1628 S12: 0.0588 S13: -0.7468 REMARK 3 S21: 0.0553 S22: -0.2222 S23: 0.2211 REMARK 3 S31: 0.0446 S32: -0.1186 S33: 0.0069 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2923 -31.8607 -7.0505 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.4952 REMARK 3 T33: 0.7360 T12: -0.0315 REMARK 3 T13: 0.2578 T23: -0.1414 REMARK 3 L TENSOR REMARK 3 L11: 6.5688 L22: 5.5889 REMARK 3 L33: 9.2208 L12: -0.5903 REMARK 3 L13: -2.3241 L23: 2.0678 REMARK 3 S TENSOR REMARK 3 S11: -0.3755 S12: 0.4553 S13: -0.3095 REMARK 3 S21: 0.1142 S22: 0.0284 S23: 0.7815 REMARK 3 S31: 0.5752 S32: -0.7070 S33: 0.4714 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3921 -58.5910 -45.9491 REMARK 3 T TENSOR REMARK 3 T11: 1.8528 T22: 1.6253 REMARK 3 T33: 1.0661 T12: 0.2827 REMARK 3 T13: 0.2762 T23: -0.9047 REMARK 3 L TENSOR REMARK 3 L11: 1.5891 L22: 2.2652 REMARK 3 L33: 2.6673 L12: -0.6583 REMARK 3 L13: -0.6596 L23: 1.4409 REMARK 3 S TENSOR REMARK 3 S11: 0.2245 S12: -0.2072 S13: 0.1994 REMARK 3 S21: 0.7630 S22: 0.0183 S23: -0.0101 REMARK 3 S31: -0.5183 S32: 0.1432 S33: -0.3773 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1114 -64.3783 -51.3958 REMARK 3 T TENSOR REMARK 3 T11: 1.9854 T22: 1.4381 REMARK 3 T33: 1.2762 T12: 0.4265 REMARK 3 T13: 0.3617 T23: -0.7954 REMARK 3 L TENSOR REMARK 3 L11: 0.2911 L22: 1.5463 REMARK 3 L33: 0.3713 L12: -0.0843 REMARK 3 L13: -0.0983 L23: 0.7403 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: -0.0009 S13: 0.1911 REMARK 3 S21: 0.2551 S22: 0.0365 S23: -0.2352 REMARK 3 S31: -0.0110 S32: -0.1497 S33: -0.0312 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10028 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.38510 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.21800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 120 MM MGCL2, 20% PEG 400, 100 MM TRIS REMARK 280 HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.20350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.74650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.73900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.20350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.74650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.73900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.20350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.74650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.73900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.20350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.74650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.73900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A -1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA A -1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A -1 C2 N3 C4 REMARK 470 DA B 21 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA B 21 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 21 C2 N3 C4 REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 DA E 20 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA E 20 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA E 20 C2 N3 C4 REMARK 470 DA F 11 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA F 11 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA F 11 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA F 15 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 19 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 108.04 -51.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 101 O REMARK 620 2 GLU C 77 OE2 117.0 REMARK 620 3 ASP C 81 OD1 105.3 107.9 REMARK 620 4 ASP C 81 OD2 90.9 152.1 59.1 REMARK 620 5 HOH C 401 O 60.5 62.3 99.4 139.8 REMARK 620 6 HOH C 402 O 54.6 109.3 55.6 84.3 56.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED TO A SHORTER DNA DUPLEX. REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS THE STARTING MODEL FOR THIS STRUCTURE AND CONTAINS THE REMARK 900 SAME PROTEIN COMPLEXED TO A DIFFERENT DUPLEX SEQUENCE. REMARK 900 RELATED ID: 7U7O RELATED DB: PDB REMARK 900 7U7O CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UOG RELATED DB: PDB REMARK 900 7UOG CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UFX RELATED DB: PDB REMARK 900 7UFX CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. DBREF 7UR0 A -1 20 PDB 7UR0 7UR0 -1 20 DBREF 7UR0 B 21 42 PDB 7UR0 7UR0 21 42 DBREF 7UR0 C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 7UR0 E 20 30 PDB 7UR0 7UR0 20 30 DBREF 7UR0 F 11 21 PDB 7UR0 7UR0 11 21 SEQADV 7UR0 MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7UR0 ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7UR0 GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7UR0 SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7UR0 HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7UR0 GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7UR0 SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7UR0 PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 22 DA DA DC DC DT DG DT DG DA DC DA DA DA SEQRES 2 A 22 DT DT DG DC DC DC DT DC DA SEQRES 1 B 22 DA DT DC DT DG DA DG DG DG DC DA DA DT SEQRES 2 B 22 DT DT DG DT DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 E 11 DA DG DA DC DG DG DT DA DA DT DT SEQRES 1 F 11 DA DG DT DA DA DT DT DA DC DC DG HET MG C 301 1 HET MG C 302 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *8(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 2 ILE C 59 HIS C 63 0 SHEET 2 AA2 2 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK O HOH A 101 MG MG C 301 1555 1555 2.05 LINK OE2 GLU C 77 MG MG C 301 1555 1555 1.97 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.19 LINK OD2 ASP C 81 MG MG C 301 1555 1555 2.27 LINK MG MG C 301 O HOH C 401 1555 1555 2.37 LINK MG MG C 301 O HOH C 402 1555 1555 2.76 CRYST1 74.407 127.493 135.478 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007381 0.00000