HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-APR-22 7URD TITLE HUMAN PORCN IN COMPLEX WITH LGK974 AND WNT3A PEPTIDE CAVEAT 7URD AJP A 504 HAS WRONG CHIRALITY AT ATOM C02 AJP A 504 HAS CAVEAT 2 7URD WRONG CHIRALITY AT ATOM C05 AJP A 504 HAS WRONG CHIRALITY CAVEAT 3 7URD AT ATOM C07 AJP A 504 HAS WRONG CHIRALITY AT ATOM C10 AJP A CAVEAT 4 7URD 504 HAS WRONG CHIRALITY AT ATOM C11 AJP A 504 HAS WRONG CAVEAT 5 7URD CHIRALITY AT ATOM C12 AJP A 504 HAS WRONG CHIRALITY AT ATOM CAVEAT 6 7URD C15 AJP A 504 HAS WRONG CHIRALITY AT ATOM C16 AJP A 504 HAS CAVEAT 7 7URD WRONG CHIRALITY AT ATOM C19 AJP A 504 HAS WRONG CHIRALITY CAVEAT 8 7URD AT ATOM C20 AJP A 504 HAS WRONG CHIRALITY AT ATOM C22 AJP A CAVEAT 9 7URD 504 HAS WRONG CHIRALITY AT ATOM C23 AJP A 504 HAS WRONG CAVEAT 10 7URD CHIRALITY AT ATOM C26 AJP A 504 HAS WRONG CHIRALITY AT ATOM CAVEAT 11 7URD C27 AJP A 504 HAS WRONG CHIRALITY AT ATOM C28 AJP A 504 HAS CAVEAT 12 7URD WRONG CHIRALITY AT ATOM C30 AJP A 504 HAS WRONG CHIRALITY CAVEAT 13 7URD AT ATOM C35 AJP A 504 HAS WRONG CHIRALITY AT ATOM C36 AJP A CAVEAT 14 7URD 504 HAS WRONG CHIRALITY AT ATOM C37 AJP A 504 HAS WRONG CAVEAT 15 7URD CHIRALITY AT ATOM C38 AJP A 504 HAS WRONG CHIRALITY AT ATOM CAVEAT 16 7URD C39 AJP A 504 HAS WRONG CHIRALITY AT ATOM C55 AJP A 504 HAS CAVEAT 17 7URD WRONG CHIRALITY AT ATOM C56 AJP A 504 HAS WRONG CHIRALITY CAVEAT 18 7URD AT ATOM C57 AJP A 504 HAS WRONG CHIRALITY AT ATOM C59 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF PROTEIN-SERINE O-PALMITOLEOYLTRANSFERASE COMPND 3 PORCUPINE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN MG61; COMPND 6 EC: 2.3.1.250; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ISOFORM 2 OF PROTEIN WNT-3A PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 199-220; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 2C11 LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: 2C11 HEAVY CHAIN; COMPND 19 CHAIN: H; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PORCN, MG61, PORC, PPN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 26 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INHIBITOR-BOUND, SUBSTRATE-BOUND, COMPLEX, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.LIU,X.QI,X.LI REVDAT 3 10-AUG-22 7URD 1 JRNL REVDAT 2 03-AUG-22 7URD 1 JRNL REVDAT 1 20-JUL-22 7URD 0 JRNL AUTH Y.LIU,X.QI,L.DONNELLY,N.ELGHOBASHI-MEINHARDT,T.LONG, JRNL AUTH 2 R.W.ZHOU,Y.SUN,B.WANG,X.LI JRNL TITL MECHANISMS AND INHIBITION OF PORCUPINE-MEDIATED WNT JRNL TITL 2 ACYLATION. JRNL REF NATURE V. 607 816 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35831507 JRNL DOI 10.1038/S41586-022-04952-2 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.920 REMARK 3 NUMBER OF PARTICLES : 397217 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7URD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264733. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LGK974 AND WNT3A PEPTIDE-BOUND REMARK 245 HUMAN PORCN; ISOFORM 2 OF REMARK 245 PROTEIN-SERINE O- REMARK 245 PALMITOLEOYLTRANSFERASE PORCUPIN REMARK 245 E (E.C.2.3.1.250); ISOFORM 2 OF REMARK 245 PROTEIN WNT-3A PEPTIDE; 2C11 REMARK 245 LIGHT CHAIN, 2C11 HEAVY CHAIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 850.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ASP A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ASP A 0 REMARK 465 LYS A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 ARG A 225 REMARK 465 LEU A 226 REMARK 465 LEU A 227 REMARK 465 ARG A 228 REMARK 465 ASN A 229 REMARK 465 LYS A 230 REMARK 465 LYS A 231 REMARK 465 ARG A 232 REMARK 465 LYS A 233 REMARK 465 ASP A 415 REMARK 465 VAL A 416 REMARK 465 ASP A 417 REMARK 465 ASP A 418 REMARK 465 THR A 419 REMARK 465 THR A 420 REMARK 465 GLU A 421 REMARK 465 GLU A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 MET B 199 REMARK 465 SER B 220 REMARK 465 MET L 1 REMARK 465 GLY L 2 REMARK 465 TRP L 3 REMARK 465 SER L 4 REMARK 465 CYS L 5 REMARK 465 ILE L 6 REMARK 465 ILE L 7 REMARK 465 LEU L 8 REMARK 465 PHE L 9 REMARK 465 LEU L 10 REMARK 465 VAL L 11 REMARK 465 ALA L 12 REMARK 465 THR L 13 REMARK 465 ALA L 14 REMARK 465 ARG L 15 REMARK 465 THR L 16 REMARK 465 GLY L 17 REMARK 465 VAL L 18 REMARK 465 HIS L 19 REMARK 465 SER L 20 REMARK 465 ARG L 128 REMARK 465 THR L 129 REMARK 465 VAL L 130 REMARK 465 ALA L 131 REMARK 465 ALA L 132 REMARK 465 PRO L 133 REMARK 465 SER L 134 REMARK 465 VAL L 135 REMARK 465 PHE L 136 REMARK 465 ILE L 137 REMARK 465 PHE L 138 REMARK 465 PRO L 139 REMARK 465 PRO L 140 REMARK 465 SER L 141 REMARK 465 ASP L 142 REMARK 465 GLU L 143 REMARK 465 GLN L 144 REMARK 465 LEU L 145 REMARK 465 LYS L 146 REMARK 465 SER L 147 REMARK 465 GLY L 148 REMARK 465 THR L 149 REMARK 465 ALA L 150 REMARK 465 SER L 151 REMARK 465 VAL L 152 REMARK 465 VAL L 153 REMARK 465 CYS L 154 REMARK 465 LEU L 155 REMARK 465 LEU L 156 REMARK 465 ASN L 157 REMARK 465 ASN L 158 REMARK 465 PHE L 159 REMARK 465 TYR L 160 REMARK 465 PRO L 161 REMARK 465 ARG L 162 REMARK 465 GLU L 163 REMARK 465 ALA L 164 REMARK 465 LYS L 165 REMARK 465 VAL L 166 REMARK 465 GLN L 167 REMARK 465 TRP L 168 REMARK 465 LYS L 169 REMARK 465 VAL L 170 REMARK 465 ASP L 171 REMARK 465 ASN L 172 REMARK 465 ALA L 173 REMARK 465 LEU L 174 REMARK 465 GLN L 175 REMARK 465 SER L 176 REMARK 465 GLY L 177 REMARK 465 ASN L 178 REMARK 465 SER L 179 REMARK 465 GLN L 180 REMARK 465 GLU L 181 REMARK 465 SER L 182 REMARK 465 VAL L 183 REMARK 465 THR L 184 REMARK 465 GLU L 185 REMARK 465 GLN L 186 REMARK 465 ASP L 187 REMARK 465 SER L 188 REMARK 465 LYS L 189 REMARK 465 ASP L 190 REMARK 465 SER L 191 REMARK 465 THR L 192 REMARK 465 TYR L 193 REMARK 465 SER L 194 REMARK 465 LEU L 195 REMARK 465 SER L 196 REMARK 465 SER L 197 REMARK 465 THR L 198 REMARK 465 LEU L 199 REMARK 465 THR L 200 REMARK 465 LEU L 201 REMARK 465 SER L 202 REMARK 465 LYS L 203 REMARK 465 ALA L 204 REMARK 465 ASP L 205 REMARK 465 TYR L 206 REMARK 465 GLU L 207 REMARK 465 LYS L 208 REMARK 465 HIS L 209 REMARK 465 LYS L 210 REMARK 465 VAL L 211 REMARK 465 TYR L 212 REMARK 465 ALA L 213 REMARK 465 CYS L 214 REMARK 465 GLU L 215 REMARK 465 VAL L 216 REMARK 465 THR L 217 REMARK 465 HIS L 218 REMARK 465 GLN L 219 REMARK 465 GLY L 220 REMARK 465 LEU L 221 REMARK 465 SER L 222 REMARK 465 SER L 223 REMARK 465 PRO L 224 REMARK 465 VAL L 225 REMARK 465 THR L 226 REMARK 465 LYS L 227 REMARK 465 SER L 228 REMARK 465 PHE L 229 REMARK 465 ASN L 230 REMARK 465 ARG L 231 REMARK 465 GLY L 232 REMARK 465 GLU L 233 REMARK 465 CYS L 234 REMARK 465 MET H 1 REMARK 465 GLY H 2 REMARK 465 TRP H 3 REMARK 465 SER H 4 REMARK 465 CYS H 5 REMARK 465 ILE H 6 REMARK 465 ILE H 7 REMARK 465 LEU H 8 REMARK 465 PHE H 9 REMARK 465 LEU H 10 REMARK 465 VAL H 11 REMARK 465 ALA H 12 REMARK 465 THR H 13 REMARK 465 ALA H 14 REMARK 465 THR H 15 REMARK 465 GLY H 16 REMARK 465 VAL H 17 REMARK 465 HIS H 18 REMARK 465 SER H 19 REMARK 465 ALA H 139 REMARK 465 SER H 140 REMARK 465 THR H 141 REMARK 465 LYS H 142 REMARK 465 GLY H 143 REMARK 465 PRO H 144 REMARK 465 SER H 145 REMARK 465 VAL H 146 REMARK 465 PHE H 147 REMARK 465 PRO H 148 REMARK 465 LEU H 149 REMARK 465 ALA H 150 REMARK 465 PRO H 151 REMARK 465 SER H 152 REMARK 465 SER H 153 REMARK 465 LYS H 154 REMARK 465 SER H 155 REMARK 465 THR H 156 REMARK 465 SER H 157 REMARK 465 GLY H 158 REMARK 465 GLY H 159 REMARK 465 THR H 160 REMARK 465 ALA H 161 REMARK 465 ALA H 162 REMARK 465 LEU H 163 REMARK 465 GLY H 164 REMARK 465 CYS H 165 REMARK 465 LEU H 166 REMARK 465 VAL H 167 REMARK 465 LYS H 168 REMARK 465 ASP H 169 REMARK 465 TYR H 170 REMARK 465 PHE H 171 REMARK 465 PRO H 172 REMARK 465 GLU H 173 REMARK 465 PRO H 174 REMARK 465 VAL H 175 REMARK 465 THR H 176 REMARK 465 VAL H 177 REMARK 465 SER H 178 REMARK 465 TRP H 179 REMARK 465 ASN H 180 REMARK 465 SER H 181 REMARK 465 GLY H 182 REMARK 465 ALA H 183 REMARK 465 LEU H 184 REMARK 465 THR H 185 REMARK 465 SER H 186 REMARK 465 GLY H 187 REMARK 465 VAL H 188 REMARK 465 HIS H 189 REMARK 465 THR H 190 REMARK 465 PHE H 191 REMARK 465 PRO H 192 REMARK 465 ALA H 193 REMARK 465 VAL H 194 REMARK 465 LEU H 195 REMARK 465 GLN H 196 REMARK 465 SER H 197 REMARK 465 SER H 198 REMARK 465 GLY H 199 REMARK 465 LEU H 200 REMARK 465 TYR H 201 REMARK 465 SER H 202 REMARK 465 LEU H 203 REMARK 465 SER H 204 REMARK 465 SER H 205 REMARK 465 VAL H 206 REMARK 465 VAL H 207 REMARK 465 THR H 208 REMARK 465 VAL H 209 REMARK 465 PRO H 210 REMARK 465 SER H 211 REMARK 465 SER H 212 REMARK 465 SER H 213 REMARK 465 LEU H 214 REMARK 465 GLY H 215 REMARK 465 THR H 216 REMARK 465 GLN H 217 REMARK 465 THR H 218 REMARK 465 TYR H 219 REMARK 465 ILE H 220 REMARK 465 CYS H 221 REMARK 465 ASN H 222 REMARK 465 VAL H 223 REMARK 465 ASN H 224 REMARK 465 HIS H 225 REMARK 465 LYS H 226 REMARK 465 PRO H 227 REMARK 465 SER H 228 REMARK 465 ASN H 229 REMARK 465 THR H 230 REMARK 465 LYS H 231 REMARK 465 VAL H 232 REMARK 465 ASP H 233 REMARK 465 LYS H 234 REMARK 465 ARG H 235 REMARK 465 VAL H 236 REMARK 465 GLU H 237 REMARK 465 PRO H 238 REMARK 465 LYS H 239 REMARK 465 SER H 240 REMARK 465 CYS H 241 REMARK 465 ASP H 242 REMARK 465 LYS H 243 REMARK 465 THR H 244 REMARK 465 HIS H 245 REMARK 465 HIS H 246 REMARK 465 HIS H 247 REMARK 465 HIS H 248 REMARK 465 HIS H 249 REMARK 465 HIS H 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 HIS A 274 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 242 OD1 ASP A 413 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 166 -62.88 -99.11 REMARK 500 LEU A 289 71.62 -117.18 REMARK 500 HIS A 336 2.25 -69.08 REMARK 500 SER A 373 -8.61 -58.01 REMARK 500 ASP A 379 78.19 -110.05 REMARK 500 SER B 211 70.55 55.73 REMARK 500 ALA L 71 -10.09 71.83 REMARK 500 SER H 59 -177.68 -69.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AJP A 504 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 370 SG REMARK 620 2 CYS A 376 SG 111.6 REMARK 620 3 CYS A 380 SG 92.7 143.1 REMARK 620 4 HIS A 382 ND1 84.4 116.3 92.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26709 RELATED DB: EMDB REMARK 900 MEMBRANE PROTEIN DBREF 7URD A 2 456 UNP Q9H237 PORCN_HUMAN 2 456 DBREF 7URD B 199 220 UNP P56704 WNT3A_HUMAN 199 220 DBREF 7URD L 1 234 PDB 7URD 7URD 1 234 DBREF 7URD H 1 250 PDB 7URD 7URD 1 250 SEQADV 7URD MET A -7 UNP Q9H237 INITIATING METHIONINE SEQADV 7URD ASP A -6 UNP Q9H237 EXPRESSION TAG SEQADV 7URD TYR A -5 UNP Q9H237 EXPRESSION TAG SEQADV 7URD LYS A -4 UNP Q9H237 EXPRESSION TAG SEQADV 7URD ASP A -3 UNP Q9H237 EXPRESSION TAG SEQADV 7URD ASP A -2 UNP Q9H237 EXPRESSION TAG SEQADV 7URD ASP A -1 UNP Q9H237 EXPRESSION TAG SEQADV 7URD ASP A 0 UNP Q9H237 EXPRESSION TAG SEQADV 7URD LYS A 1 UNP Q9H237 EXPRESSION TAG SEQRES 1 A 464 MET ASP TYR LYS ASP ASP ASP ASP LYS ALA THR PHE SER SEQRES 2 A 464 ARG GLN GLU PHE PHE GLN GLN LEU LEU GLN GLY CYS LEU SEQRES 3 A 464 LEU PRO THR ALA GLN GLN GLY LEU ASP GLN ILE TRP LEU SEQRES 4 A 464 LEU LEU ALA ILE CYS LEU ALA CYS ARG LEU LEU TRP ARG SEQRES 5 A 464 LEU GLY LEU PRO SER TYR LEU LYS HIS ALA SER THR VAL SEQRES 6 A 464 ALA GLY GLY PHE PHE SER LEU TYR HIS PHE PHE GLN LEU SEQRES 7 A 464 HIS MET VAL TRP VAL VAL LEU LEU SER LEU LEU CYS TYR SEQRES 8 A 464 LEU VAL LEU PHE LEU CYS ARG HIS SER SER HIS ARG GLY SEQRES 9 A 464 VAL PHE LEU SER VAL THR ILE LEU ILE TYR LEU LEU MET SEQRES 10 A 464 GLY GLU MET HIS MET VAL ASP THR VAL THR TRP HIS LYS SEQRES 11 A 464 MET ARG GLY ALA GLN MET ILE VAL ALA MET LYS ALA VAL SEQRES 12 A 464 SER LEU GLY PHE ASP LEU ASP ARG GLY GLU VAL GLY THR SEQRES 13 A 464 VAL PRO SER PRO VAL GLU PHE MET GLY TYR LEU TYR PHE SEQRES 14 A 464 VAL GLY THR ILE VAL PHE GLY PRO TRP ILE SER PHE HIS SEQRES 15 A 464 SER TYR LEU GLN ALA VAL GLN GLY ARG PRO LEU SER CYS SEQRES 16 A 464 ARG TRP LEU GLN LYS VAL ALA ARG SER LEU ALA LEU ALA SEQRES 17 A 464 LEU LEU CYS LEU VAL LEU SER THR CYS VAL GLY PRO TYR SEQRES 18 A 464 LEU PHE PRO TYR PHE ILE PRO LEU ASN GLY ASP ARG LEU SEQRES 19 A 464 LEU ARG ASN LYS LYS ARG LYS ALA ARG TRP LEU ARG ALA SEQRES 20 A 464 TYR GLU SER ALA VAL SER PHE HIS PHE SER ASN TYR PHE SEQRES 21 A 464 VAL GLY PHE LEU SER GLU ALA THR ALA THR LEU ALA GLY SEQRES 22 A 464 ALA GLY PHE THR GLU GLU LYS ASP HIS LEU GLU TRP ASP SEQRES 23 A 464 LEU THR VAL SER LYS PRO LEU ASN VAL GLU LEU PRO ARG SEQRES 24 A 464 SER MET VAL GLU VAL VAL THR SER TRP ASN LEU PRO MET SEQRES 25 A 464 SER TYR TRP LEU ASN ASN TYR VAL PHE LYS ASN ALA LEU SEQRES 26 A 464 ARG LEU GLY THR PHE SER ALA VAL LEU VAL THR TYR ALA SEQRES 27 A 464 ALA SER ALA LEU LEU HIS GLY PHE SER PHE HIS LEU ALA SEQRES 28 A 464 ALA VAL LEU LEU SER LEU ALA PHE ILE THR TYR VAL GLU SEQRES 29 A 464 HIS VAL LEU ARG LYS ARG LEU ALA ARG ILE LEU SER ALA SEQRES 30 A 464 CYS VAL LEU SER LYS ARG CYS PRO PRO ASP CYS SER HIS SEQRES 31 A 464 GLN HIS ARG LEU GLY LEU GLY VAL ARG ALA LEU ASN LEU SEQRES 32 A 464 LEU PHE GLY ALA LEU ALA ILE PHE HIS LEU ALA TYR LEU SEQRES 33 A 464 GLY SER LEU PHE ASP VAL ASP VAL ASP ASP THR THR GLU SEQRES 34 A 464 GLU GLN GLY TYR GLY MET ALA TYR THR VAL HIS LYS TRP SEQRES 35 A 464 SER GLU LEU SER TRP ALA SER HIS TRP VAL THR PHE GLY SEQRES 36 A 464 CYS TRP ILE PHE TYR ARG LEU ILE GLY SEQRES 1 B 22 MET HIS LEU LYS CYS LYS CYS HIS GLY LEU SER GLY SER SEQRES 2 B 22 CYS GLU VAL LYS THR CYS TRP TRP SER SEQRES 1 L 234 MET GLY TRP SER CYS ILE ILE LEU PHE LEU VAL ALA THR SEQRES 2 L 234 ALA ARG THR GLY VAL HIS SER ASP ILE HIS MET THR GLN SEQRES 3 L 234 SER PRO ALA SER LEU SER ALA PHE VAL GLY GLU THR VAL SEQRES 4 L 234 THR ILE THR CYS ARG THR SER GLU ASN ILE PHE SER TYR SEQRES 5 L 234 LEU ALA TRP TYR GLN GLN LYS GLN GLY LYS SER PRO GLN SEQRES 6 L 234 LEU LEU VAL TYR ASN ALA LYS THR LEU THR SER GLY VAL SEQRES 7 L 234 PRO SER ARG PHE SER GLY SER GLY SER GLY THR GLN PHE SEQRES 8 L 234 SER LEU LYS ILE ASN SER LEU GLN PRO GLU ASP PHE GLY SEQRES 9 L 234 SER TYR TYR CYS GLN HIS HIS TYR GLY SER PRO TYR THR SEQRES 10 L 234 PHE GLY GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL SEQRES 11 L 234 ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU SEQRES 12 L 234 GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU SEQRES 13 L 234 ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS SEQRES 14 L 234 VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER SEQRES 15 L 234 VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SEQRES 16 L 234 SER SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS SEQRES 17 L 234 HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SEQRES 18 L 234 SER SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 250 MET GLY TRP SER CYS ILE ILE LEU PHE LEU VAL ALA THR SEQRES 2 H 250 ALA THR GLY VAL HIS SER GLU ILE GLN LEU GLN GLN SER SEQRES 3 H 250 GLY ALA GLU LEU VAL LYS PRO GLY ALA SER VAL LYS MET SEQRES 4 H 250 SER CYS LYS VAL SER GLY TYR SER PHE THR GLY TYR ASN SEQRES 5 H 250 MET ASN TRP VAL LYS GLN SER HIS GLY LYS SER LEU GLU SEQRES 6 H 250 TRP ILE GLY ASN ILE ASN PRO TYR TYR VAL SER THR ASN SEQRES 7 H 250 TYR ASN GLN LYS PHE THR GLY LYS ALA THR PHE THR VAL SEQRES 8 H 250 ASP ARG SER SER SER THR ALA TYR MET GLN LEU ASP SER SEQRES 9 H 250 LEU THR SER GLU ASP SER ALA VAL TYR TYR CYS ALA ARG SEQRES 10 H 250 SER TYR GLY SER SER HIS THR PHE ALA TYR TRP GLY GLN SEQRES 11 H 250 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 12 H 250 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 13 H 250 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 14 H 250 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 15 H 250 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 16 H 250 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 17 H 250 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 18 H 250 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 19 H 250 ARG VAL GLU PRO LYS SER CYS ASP LYS THR HIS HIS HIS SEQRES 20 H 250 HIS HIS HIS HET O50 A 501 30 HET CLR A 502 28 HET CLR A 503 28 HET AJP A 504 65 HET OLA A 505 20 HET ZN A 506 1 HETNAM O50 2-[(2P)-2',3-DIMETHYL[2,4'-BIPYRIDIN]-5-YL]-N-[(5P)-5- HETNAM 2 O50 (PYRAZIN-2-YL)PYRIDIN-2-YL]ACETAMIDE HETNAM CLR CHOLESTEROL HETNAM AJP DIGITONIN HETNAM OLA OLEIC ACID HETNAM ZN ZINC ION FORMUL 5 O50 C23 H20 N6 O FORMUL 6 CLR 2(C27 H46 O) FORMUL 8 AJP C56 H92 O29 FORMUL 9 OLA C18 H34 O2 FORMUL 10 ZN ZN 2+ HELIX 1 AA1 SER A 5 GLN A 28 1 24 HELIX 2 AA2 ILE A 29 TRP A 43 1 15 HELIX 3 AA3 PRO A 48 PHE A 68 1 21 HELIX 4 AA4 MET A 72 CYS A 89 1 18 HELIX 5 AA5 HIS A 94 GLU A 111 1 18 HELIX 6 AA6 ASP A 116 MET A 123 1 8 HELIX 7 AA7 MET A 123 ARG A 143 1 21 HELIX 8 AA8 SER A 151 TYR A 160 1 10 HELIX 9 AA9 SER A 172 GLN A 181 1 10 HELIX 10 AB1 SER A 186 CYS A 209 1 24 HELIX 11 AB2 ARG A 235 ALA A 264 1 30 HELIX 12 AB3 PRO A 284 LEU A 289 1 6 HELIX 13 AB4 SER A 292 ASN A 301 1 10 HELIX 14 AB5 ASN A 301 VAL A 312 1 12 HELIX 15 AB6 VAL A 312 LEU A 317 1 6 HELIX 16 AB7 GLY A 320 HIS A 336 1 17 HELIX 17 AB8 SER A 339 LEU A 367 1 29 HELIX 18 AB9 GLY A 387 SER A 410 1 24 HELIX 19 AC1 LEU A 411 ASP A 413 5 3 HELIX 20 AC2 GLY A 426 GLU A 436 1 11 HELIX 21 AC3 TRP A 439 ILE A 455 1 17 HELIX 22 AC4 GLN L 99 PHE L 103 5 5 HELIX 23 AC5 SER H 47 TYR H 51 5 5 HELIX 24 AC6 THR H 106 SER H 110 5 5 SHEET 1 AA1 2 THR A 269 GLU A 270 0 SHEET 2 AA1 2 LEU A 275 GLU A 276 -1 O GLU A 276 N THR A 269 SHEET 1 AA2 2 LYS B 202 HIS B 206 0 SHEET 2 AA2 2 VAL B 214 TRP B 218 -1 O TRP B 218 N LYS B 202 SHEET 1 AA3 4 MET L 24 SER L 27 0 SHEET 2 AA3 4 THR L 38 ILE L 49 -1 O THR L 42 N SER L 27 SHEET 3 AA3 4 GLY L 88 ASN L 96 -1 O PHE L 91 N CYS L 43 SHEET 4 AA3 4 PHE L 82 GLY L 86 -1 N SER L 83 O LYS L 94 SHEET 1 AA4 6 SER L 30 ALA L 33 0 SHEET 2 AA4 6 THR L 122 ILE L 126 1 O GLU L 125 N LEU L 31 SHEET 3 AA4 6 SER L 105 GLN L 109 -1 N TYR L 106 O THR L 122 SHEET 4 AA4 6 ALA L 54 GLN L 58 -1 N GLN L 58 O SER L 105 SHEET 5 AA4 6 LEU L 66 TYR L 69 -1 O LEU L 67 N TRP L 55 SHEET 6 AA4 6 THR L 73 LEU L 74 -1 O THR L 73 N TYR L 69 SHEET 1 AA5 4 GLN H 22 GLN H 25 0 SHEET 2 AA5 4 VAL H 37 SER H 44 -1 O SER H 44 N GLN H 22 SHEET 3 AA5 4 THR H 97 LEU H 102 -1 O MET H 100 N MET H 39 SHEET 4 AA5 4 ALA H 87 ASP H 92 -1 N THR H 90 O TYR H 99 SHEET 1 AA6 6 GLU H 29 VAL H 31 0 SHEET 2 AA6 6 THR H 132 VAL H 136 1 O THR H 135 N GLU H 29 SHEET 3 AA6 6 VAL H 112 SER H 118 -1 N TYR H 113 O THR H 132 SHEET 4 AA6 6 MET H 53 GLN H 58 -1 N GLN H 58 O VAL H 112 SHEET 5 AA6 6 LEU H 64 ILE H 70 -1 O GLY H 68 N TRP H 55 SHEET 6 AA6 6 THR H 77 TYR H 79 -1 O ASN H 78 N ASN H 69 SHEET 1 AA7 4 GLU H 29 VAL H 31 0 SHEET 2 AA7 4 THR H 132 VAL H 136 1 O THR H 135 N GLU H 29 SHEET 3 AA7 4 VAL H 112 SER H 118 -1 N TYR H 113 O THR H 132 SHEET 4 AA7 4 PHE H 125 TRP H 128 -1 O TYR H 127 N ARG H 117 SSBOND 1 CYS A 17 CYS A 209 1555 1555 2.03 SSBOND 2 CYS B 203 CYS B 217 1555 1555 2.03 SSBOND 3 CYS B 205 CYS B 212 1555 1555 2.03 SSBOND 4 CYS L 43 CYS L 108 1555 1555 2.03 SSBOND 5 CYS H 41 CYS H 115 1555 1555 2.03 LINK SG CYS A 370 ZN ZN A 506 1555 1555 2.06 LINK SG CYS A 376 ZN ZN A 506 1555 1555 2.13 LINK SG CYS A 380 ZN ZN A 506 1555 1555 2.31 LINK ND1 HIS A 382 ZN ZN A 506 1555 1555 2.12 CISPEP 1 SER L 27 PRO L 28 0 -5.71 CISPEP 2 SER L 114 PRO L 115 0 0.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000