data_7URM # _entry.id 7URM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7URM pdb_00007urm 10.2210/pdb7urm/pdb WWPDB D_1000264743 ? ? EMDB EMD-26714 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-10 2 'Structure model' 1 1 2022-10-26 3 'Structure model' 1 2 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7URM _pdbx_database_status.recvd_initial_deposition_date 2022-04-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '7URI contains same tRNA in the A site of the ribosome' 7URI unspecified EMDB 'allo-tRNAUTu1A in the P site of the E. coli ribosome' EMD-26714 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 dieter.soll@yale.edu Dieter Soll ? 'principal investigator/group leader' 0000-0002-3077-8986 3 puglisi@stanford.edu Joseph Puglisi ? 'principal investigator/group leader' 0000-0001-9268-5112 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, J.' 1 ? 'Prabhakar, A.' 2 ? 'Krahn, N.' 3 0000-0003-0696-433X 'Vargas-Rodriguez, O.' 4 0000-0002-2301-2800 'Krupkin, M.' 5 0000-0002-5917-0894 'Fu, Z.' 6 ? 'Acosta-Reyes, F.J.' 7 0000-0001-8524-1484 'Ge, X.' 8 ? 'Choi, J.' 9 ? 'Crnkovic, A.' 10 0000-0002-0581-1887 'Ehrenberg, M.' 11 ? 'Viani Puglisi, E.' 12 0000-0002-4795-5299 'Soll, D.' 13 0000-0002-3077-8986 'Puglisi, J.' 14 0000-0001-9268-5112 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 10201 _citation.page_last 10211 _citation.title 'Uncovering translation roadblocks during the development of a synthetic tRNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac576 _citation.pdbx_database_id_PubMed 35882385 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Prabhakar, A.' 1 ? primary 'Krahn, N.' 2 ? primary 'Zhang, J.' 3 ? primary 'Vargas-Rodriguez, O.' 4 ? primary 'Krupkin, M.' 5 ? primary 'Fu, Z.' 6 ? primary 'Acosta-Reyes, F.J.' 7 ? primary 'Ge, X.' 8 ? primary 'Choi, J.' 9 ? primary 'Crnkovic, A.' 10 ? primary 'Ehrenberg, M.' 11 ? primary 'Puglisi, E.V.' 12 ? primary 'Soll, D.' 13 ? primary 'Puglisi, J.' 14 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description allo-tRNAUTU1A _entity.formula_weight 28782.008 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAGGGGAAAUUCUAUCUGGUGAUAGACGGGAACUCUAAAUUCCUUGAAAUGCCUCGCCGCAUUGGGUUCGAUUCCCUUC CCCUCCGCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAGGGGAAAUUCUAUCUGGUGAUAGACGGGAACUCUAAAUUCCUUGAAAUGCCUCGCCGCAUUGGGUUCGAUUCCCUUC CCCUCCGCCA ; _entity_poly.pdbx_strand_id v _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 G n 1 6 G n 1 7 G n 1 8 A n 1 9 A n 1 10 A n 1 11 U n 1 12 U n 1 13 C n 1 14 U n 1 15 A n 1 16 U n 1 17 C n 1 18 U n 1 19 G n 1 20 G n 1 21 U n 1 22 G n 1 23 A n 1 24 U n 1 25 A n 1 26 G n 1 27 A n 1 28 C n 1 29 G n 1 30 G n 1 31 G n 1 32 A n 1 33 A n 1 34 C n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 A n 1 40 A n 1 41 U n 1 42 U n 1 43 C n 1 44 C n 1 45 U n 1 46 U n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 U n 1 52 G n 1 53 C n 1 54 C n 1 55 U n 1 56 C n 1 57 G n 1 58 C n 1 59 C n 1 60 G n 1 61 C n 1 62 A n 1 63 U n 1 64 U n 1 65 G n 1 66 G n 1 67 G n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 A n 1 73 U n 1 74 U n 1 75 C n 1 76 C n 1 77 C n 1 78 U n 1 79 U n 1 80 C n 1 81 C n 1 82 C n 1 83 C n 1 84 U n 1 85 C n 1 86 C n 1 87 G n 1 88 C n 1 89 C n 1 90 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 90 _pdbx_entity_src_syn.organism_scientific metagenome _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 256318 _pdbx_entity_src_syn.details ;Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 (Crude oil metagenome 6, ASSEMBLY_DATE=20131204) ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G v . n A 1 2 G 2 2 2 G G v . n A 1 3 A 3 3 3 A A v . n A 1 4 G 4 4 4 G G v . n A 1 5 G 5 5 5 G G v . n A 1 6 G 6 5 5 G G v A n A 1 7 G 7 5 5 G G v B n A 1 8 A 8 6 6 A A v . n A 1 9 A 9 7 7 A A v . n A 1 10 A 10 8 8 A A v . n A 1 11 U 11 9 9 U U v . n A 1 12 U 12 10 10 U U v . n A 1 13 C 13 11 11 C C v . n A 1 14 U 14 12 12 U U v . n A 1 15 A 15 13 13 A A v . n A 1 16 U 16 14 14 U U v . n A 1 17 C 17 15 15 C C v . n A 1 18 U 18 16 16 U U v . n A 1 19 G 19 18 18 G G v . n A 1 20 G 20 19 19 G G v . n A 1 21 U 21 20 20 U U v . n A 1 22 G 22 20 20 G G v A n A 1 23 A 23 21 21 A A v . n A 1 24 U 24 22 22 U U v . n A 1 25 A 25 23 23 A A v . n A 1 26 G 26 24 24 G G v . n A 1 27 A 27 25 25 A A v . n A 1 28 C 28 26 26 C C v . n A 1 29 G 29 27 27 G G v . n A 1 30 G 30 28 28 G G v . n A 1 31 G 31 29 29 G G v . n A 1 32 A 32 30 30 A A v . n A 1 33 A 33 31 31 A A v . n A 1 34 C 34 32 32 C C v . n A 1 35 U 35 33 33 U U v . n A 1 36 C 36 34 34 C C v . n A 1 37 U 37 35 35 U U v . n A 1 38 A 38 36 36 A A v . n A 1 39 A 39 37 37 A A v . n A 1 40 A 40 38 38 A A v . n A 1 41 U 41 39 39 U U v . n A 1 42 U 42 40 40 U U v . n A 1 43 C 43 41 41 C C v . n A 1 44 C 44 42 42 C C v . n A 1 45 U 45 42 42 U U v A n A 1 46 U 46 43 43 U U v . n A 1 47 G 47 44 44 G G v . n A 1 48 A 48 45 45 A A v . n A 1 49 A 49 46 46 A A v . n A 1 50 A 50 47 47 A A v . n A 1 51 U 51 47 47 U U v A n A 1 52 G 52 47 47 G G v B n A 1 53 C 53 47 47 C C v C n A 1 54 C 54 47 47 C C v D n A 1 55 U 55 47 47 U U v E n A 1 56 C 56 47 47 C C v F n A 1 57 G 57 47 47 G G v G n A 1 58 C 58 47 47 C C v H n A 1 59 C 59 47 47 C C v I n A 1 60 G 60 47 47 G G v J n A 1 61 C 61 47 47 C C v K n A 1 62 A 62 47 47 A A v L n A 1 63 U 63 47 47 U U v M n A 1 64 U 64 48 48 U U v . n A 1 65 G 65 51 51 G G v . n A 1 66 G 66 52 52 G G v . n A 1 67 G 67 53 53 G G v . n A 1 68 U 68 54 54 U U v . n A 1 69 U 69 55 55 U U v . n A 1 70 C 70 56 56 C C v . n A 1 71 G 71 57 57 G G v . n A 1 72 A 72 58 58 A A v . n A 1 73 U 73 59 59 U U v . n A 1 74 U 74 60 60 U U v . n A 1 75 C 75 61 61 C C v . n A 1 76 C 76 62 62 C C v . n A 1 77 C 77 63 63 C C v . n A 1 78 U 78 66 66 U U v . n A 1 79 U 79 67 67 U U v . n A 1 80 C 80 67 67 C C v A n A 1 81 C 81 67 67 C C v B n A 1 82 C 82 68 68 C C v . n A 1 83 C 83 69 69 C C v . n A 1 84 U 84 70 70 U U v . n A 1 85 C 85 71 71 C C v . n A 1 86 C 86 72 72 C C v . n A 1 87 G 87 73 73 G G v . n A 1 88 C 88 74 74 C C v . n A 1 89 C 89 75 75 C C v . n A 1 90 A 90 76 76 A A v . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7URM _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7URM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7URM _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7URM _struct.title 'allo-tRNAUTu1A in the P site of the E. coli ribosome' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7URM _struct_keywords.text 'tRNA, selenocysteine, ribosome, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7URM _struct_ref.pdbx_db_accession 7URM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7URM _struct_ref_seq.pdbx_strand_id v _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7URM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 86 N3 ? ? v G 1 v C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 86 O2 ? ? v G 1 v C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 86 N4 ? ? v G 1 v C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 85 N3 ? ? v G 2 v C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 85 O2 ? ? v G 2 v C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 85 N4 ? ? v G 2 v C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 84 N3 ? ? v A 3 v U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 84 O4 ? ? v A 3 v U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 83 N3 ? ? v G 4 v C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 83 O2 ? ? v G 4 v C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 83 N4 ? ? v G 4 v C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? A ? 1_555 A C 81 N3 ? B v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? B ? 1_555 A C 80 N3 ? A v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? A ? 1_555 A C 81 O2 ? B v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? B ? 1_555 A C 80 O2 ? A v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? A ? 1_555 A C 81 N4 ? B v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? B ? 1_555 A C 80 N4 ? A v G 5 v C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 82 N3 ? ? v G 5 v C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 82 O2 ? ? v G 5 v C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 82 N4 ? ? v G 5 v C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 79 N3 ? ? v A 6 v U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 79 O4 ? ? v A 6 v U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 78 N3 ? ? v A 7 v U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 78 O4 ? ? v A 7 v U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 27 N1 ? ? v U 10 v A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 27 N6 ? ? v U 10 v A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 26 N1 ? ? v C 11 v G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 26 O6 ? ? v C 11 v G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 26 N2 ? ? v C 11 v G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 25 N1 ? ? v U 12 v A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 25 N6 ? ? v U 12 v A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 24 N3 ? ? v A 13 v U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 24 O4 ? ? v A 13 v U 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 23 N1 ? ? v U 14 v A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 23 N6 ? ? v U 14 v A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 22 N1 ? A v C 15 v G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 22 O6 ? A v C 15 v G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 22 N2 ? A v C 15 v G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 N3 ? ? ? 1_555 A U 73 O2 ? ? v U 16 v U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog40 hydrog ? ? A U 18 O2 ? ? ? 1_555 A U 73 N3 ? ? v U 16 v U 59 1_555 ? ? ? ? ? ? TYPE_13_PAIR ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A U 69 O2 ? ? v G 18 v U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog42 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 70 N3 ? ? v G 19 v C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 70 O2 ? ? v G 19 v C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 70 N4 ? ? v G 19 v C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 47 N1 ? ? v C 26 v G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 47 O6 ? ? v C 26 v G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 47 N2 ? ? v C 26 v G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 29 N1 ? ? ? 1_555 A U 45 O2 ? A v G 27 v U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog49 hydrog ? ? A G 29 O6 ? ? ? 1_555 A U 45 N3 ? A v G 27 v U 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 44 N3 ? ? v G 28 v C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 44 O2 ? ? v G 28 v C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 44 N4 ? ? v G 28 v C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 43 N3 ? ? v G 29 v C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 43 O2 ? ? v G 29 v C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 43 N4 ? ? v G 29 v C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 32 N1 ? ? ? 1_555 A U 42 N3 ? ? v A 30 v U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 32 N6 ? ? ? 1_555 A U 42 O4 ? ? v A 30 v U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 41 N3 ? ? v A 31 v U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 41 O4 ? ? v A 31 v U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 34 O2 ? ? ? 1_555 A A 40 N6 ? ? v C 32 v A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 64 N3 ? ? v A 46 v U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 64 O4 ? ? v A 46 v U 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 63 N3 ? M v A 47 v U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 63 O4 ? M v A 47 v U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 53 N3 ? C ? 1_555 A G 60 N1 ? J v C 47 v G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 53 N4 ? C ? 1_555 A G 60 O6 ? J v C 47 v G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 53 O2 ? C ? 1_555 A G 60 N2 ? J v C 47 v G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 52 N1 ? B ? 1_555 A C 61 N3 ? K v G 47 v C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 52 N2 ? B ? 1_555 A C 61 O2 ? K v G 47 v C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 52 O6 ? B ? 1_555 A C 61 N4 ? K v G 47 v C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 51 N3 ? A ? 1_555 A A 62 N1 ? L v U 47 v A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 51 O4 ? A ? 1_555 A A 62 N6 ? L v U 47 v A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 55 O2 ? E ? 1_555 A C 59 N4 ? I v U 47 v C 47 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog74 hydrog ? ? A G 65 N1 ? ? ? 1_555 A C 77 N3 ? ? v G 51 v C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 65 N2 ? ? ? 1_555 A C 77 O2 ? ? v G 51 v C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 65 O6 ? ? ? 1_555 A C 77 N4 ? ? v G 51 v C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 66 N1 ? ? ? 1_555 A C 76 N3 ? ? v G 52 v C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 66 N2 ? ? ? 1_555 A C 76 O2 ? ? v G 52 v C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 66 O6 ? ? ? 1_555 A C 76 N4 ? ? v G 52 v C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 75 N3 ? ? v G 53 v C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 75 O2 ? ? v G 53 v C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 75 N4 ? ? v G 53 v C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 68 N3 ? ? ? 1_555 A A 72 N7 ? ? v U 54 v A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog84 hydrog ? ? A U 68 O2 ? ? ? 1_555 A A 72 N6 ? ? v U 54 v A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" v A 8 ? ? "O3'" v A 8 ? ? P v U 9 ? ? 140.94 119.70 21.24 1.20 Y 2 1 "O3'" v A 8 ? ? P v U 9 ? ? "O5'" v U 9 ? ? 117.54 104.00 13.54 1.90 Y 3 1 "O5'" v U 9 ? ? P v U 9 ? ? OP2 v U 9 ? ? 91.68 105.70 -14.02 0.90 N 4 1 "O5'" v A 46 ? ? "C5'" v A 46 ? ? "C4'" v A 46 ? ? 104.00 109.40 -5.40 0.80 N # _em_3d_fitting.entry_id 7URM _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7URM _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 23609 _em_3d_reconstruction.resolution 3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'E. coli 70S ribosome with allo-tRNAUTu1A in the P site' _em_entity_assembly.source NATURAL _em_entity_assembly.type RIBOSOME _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7URM _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.details 'blot for 3 seconds before plunging' _em_vitrification.humidity ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7URM _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7URM _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 562 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Escherichia coli' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 10850093 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7URM 'double helix' 7URM 'a-form double helix' 7URM 'parallel strands' 7URM 'hairpin loop' 7URM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 86 1_555 0.004 -0.304 -0.561 -6.278 -1.633 -1.276 1 v_G1:C72_v v 1 ? v 72 ? 19 1 1 A G 2 1_555 A C 85 1_555 -0.091 -0.337 -0.485 -6.731 -1.110 -0.652 2 v_G2:C71_v v 2 ? v 71 ? 19 1 1 A A 3 1_555 A U 84 1_555 0.048 -0.245 -0.386 -4.563 -0.462 -2.122 3 v_A3:U70_v v 3 ? v 70 ? 20 1 1 A G 4 1_555 A C 83 1_555 -0.292 -0.232 -0.459 -4.025 -1.843 -0.409 4 v_G4:C69_v v 4 ? v 69 ? 19 1 1 A G 5 1_555 A C 82 1_555 -0.256 -0.135 -0.637 -5.861 -0.335 -2.232 5 v_G5:C68_v v 5 ? v 68 ? 19 1 1 A G 6 1_555 A C 81 1_555 -0.277 -0.026 -0.592 -6.128 -3.348 -1.106 6 v_G5A:C67B_v v 5 A v 67 B 19 1 1 A G 7 1_555 A C 80 1_555 -0.175 0.052 -0.500 -8.346 -6.562 -2.394 7 v_G5B:C67A_v v 5 B v 67 A 19 1 1 A A 8 1_555 A U 79 1_555 0.105 -0.030 -0.742 -4.885 3.132 -2.556 8 v_A6:U67_v v 6 ? v 67 ? 20 1 1 A A 9 1_555 A U 78 1_555 0.319 0.002 -0.617 2.580 -3.990 -3.729 9 v_A7:U66_v v 7 ? v 66 ? 20 1 1 A G 65 1_555 A C 77 1_555 -0.216 -0.208 -0.517 -4.491 -2.965 -3.326 10 v_G51:C63_v v 51 ? v 63 ? 19 1 1 A G 66 1_555 A C 76 1_555 -0.052 -0.114 -0.434 -8.390 -3.406 -0.842 11 v_G52:C62_v v 52 ? v 62 ? 19 1 1 A G 67 1_555 A C 75 1_555 -0.145 -0.086 -0.380 -12.420 -4.354 -2.382 12 v_G53:C61_v v 53 ? v 61 ? 19 1 1 A U 68 1_555 A A 72 1_555 4.316 -1.901 0.597 -5.264 11.783 -107.821 13 v_U54:A58_v v 54 ? v 58 ? 24 4 1 A U 69 1_555 A G 19 1_555 0.490 -5.825 0.368 18.180 5.986 -92.186 14 v_U55:G18_v v 55 ? v 18 ? ? 6 1 A A 40 1_555 A C 34 1_555 -4.429 -0.770 1.271 19.254 11.045 0.509 15 v_A38:C32_v v 38 ? v 32 ? ? 1 1 A U 41 1_555 A A 33 1_555 -0.079 -0.068 0.150 13.786 -7.449 0.735 16 v_U39:A31_v v 39 ? v 31 ? 20 1 1 A U 42 1_555 A A 32 1_555 -0.014 -0.113 -0.235 4.296 -7.392 1.804 17 v_U40:A30_v v 40 ? v 30 ? 20 1 1 A C 43 1_555 A G 31 1_555 0.106 -0.078 -0.177 1.625 -4.557 1.101 18 v_C41:G29_v v 41 ? v 29 ? 19 1 1 A C 44 1_555 A G 30 1_555 0.020 -0.057 0.021 -3.178 -5.600 -0.466 19 v_C42:G28_v v 42 ? v 28 ? 19 1 1 A U 45 1_555 A G 29 1_555 1.976 -0.293 0.458 -6.193 -5.052 -0.634 20 v_U42A:G27_v v 42 A v 27 ? 28 1 1 A G 47 1_555 A C 28 1_555 -0.028 -0.147 -0.594 2.926 -2.665 -0.152 21 v_G44:C26_v v 44 ? v 26 ? 19 1 1 A U 12 1_555 A A 27 1_555 -0.141 -0.184 -0.431 5.243 -0.093 -2.402 22 v_U10:A25_v v 10 ? v 25 ? 20 1 1 A C 13 1_555 A G 26 1_555 0.090 -0.134 -0.244 -0.119 -5.511 -2.093 23 v_C11:G24_v v 11 ? v 24 ? 19 1 1 A U 14 1_555 A A 25 1_555 -0.023 -0.095 0.025 -3.087 -4.140 -2.749 24 v_U12:A23_v v 12 ? v 23 ? 20 1 1 A A 15 1_555 A U 24 1_555 -0.055 -0.100 0.198 -3.894 -8.859 -1.300 25 v_A13:U22_v v 13 ? v 22 ? 20 1 1 A U 16 1_555 A A 23 1_555 0.025 -0.118 0.277 -3.608 -5.727 -0.871 26 v_U14:A21_v v 14 ? v 21 ? 20 1 1 A C 17 1_555 A G 22 1_555 0.099 -0.120 0.217 2.051 -2.930 -2.308 27 v_C15:G20A_v v 15 ? v 20 A 19 1 1 A U 18 1_555 A U 73 1_555 -2.165 -2.859 0.040 0.331 -2.720 -179.527 28 v_U16:U59_v v 16 ? v 59 ? 13 2 1 A G 20 1_555 A C 70 1_555 -0.228 -0.131 -0.059 -8.091 -13.648 0.024 29 v_G19:C56_v v 19 ? v 56 ? 19 1 1 A A 49 1_555 A U 64 1_555 -0.265 -0.130 -0.391 -2.369 7.741 3.544 30 v_A46:U48_v v 46 ? v 48 ? 20 1 1 A A 50 1_555 A U 63 1_555 -0.108 -0.106 -0.467 -4.193 -11.237 2.092 31 v_A47:U47M_v v 47 ? v 47 M 20 1 1 A U 51 1_555 A A 62 1_555 -0.080 -0.133 -0.078 -1.673 -4.287 -1.540 32 v_U47A:A47L_v v 47 A v 47 L 20 1 1 A G 52 1_555 A C 61 1_555 -0.074 -0.126 0.120 -4.672 0.993 -2.287 33 v_G47B:C47K_v v 47 B v 47 K 19 1 1 A C 53 1_555 A G 60 1_555 0.181 -0.185 0.149 3.285 1.978 -4.357 34 v_C47C:G47J_v v 47 C v 47 J 19 1 1 A U 55 1_555 A C 59 1_555 4.975 -1.245 1.874 25.771 -4.902 43.571 35 v_U47E:C47I_v v 47 E v 47 I ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 86 1_555 A G 2 1_555 A C 85 1_555 -0.406 -1.718 3.225 -0.735 8.626 33.349 -4.144 0.581 2.717 14.724 1.255 34.424 1 vv_G1G2:C71C72_vv v 1 ? v 72 ? v 2 ? v 71 ? 1 A G 2 1_555 A C 85 1_555 A A 3 1_555 A U 84 1_555 -0.169 -1.573 3.209 -0.377 7.610 32.428 -3.923 0.236 2.780 13.397 0.663 33.288 2 vv_G2A3:U70C71_vv v 2 ? v 71 ? v 3 ? v 70 ? 1 A A 3 1_555 A U 84 1_555 A G 4 1_555 A C 83 1_555 0.356 -1.668 3.333 0.755 6.786 28.675 -4.676 -0.545 2.879 13.462 -1.498 29.461 3 vv_A3G4:C69U70_vv v 3 ? v 70 ? v 4 ? v 69 ? 1 A G 4 1_555 A C 83 1_555 A G 5 1_555 A C 82 1_555 0.291 -1.691 3.393 1.762 5.803 32.714 -3.921 -0.215 3.067 10.193 -3.095 33.257 4 vv_G4G5:C68C69_vv v 4 ? v 69 ? v 5 ? v 68 ? 1 A G 5 1_555 A C 82 1_555 A G 6 1_555 A C 81 1_555 -0.415 -1.600 3.311 -0.596 6.433 31.492 -4.003 0.646 2.942 11.699 1.085 32.131 5 vv_G5G5A:C67BC68_vv v 5 ? v 68 ? v 5 A v 67 B 1 A G 6 1_555 A C 81 1_555 A G 7 1_555 A C 80 1_555 0.412 -1.825 3.358 0.914 9.330 27.822 -5.497 -0.628 2.632 18.742 -1.837 29.329 6 vv_G5AG5B:C67AC67B_vv v 5 A v 67 B v 5 B v 67 A 1 A G 7 1_555 A C 80 1_555 A A 8 1_555 A U 79 1_555 0.013 -1.767 3.329 5.066 12.779 37.730 -3.947 0.523 2.600 19.006 -7.535 40.070 7 vv_G5BA6:U67C67A_vv v 5 B v 67 A v 6 ? v 67 ? 1 A A 8 1_555 A U 79 1_555 A A 9 1_555 A U 78 1_555 -0.267 -1.173 3.180 -1.093 6.935 29.266 -3.586 0.306 2.841 13.483 2.124 30.079 8 vv_A6A7:U66U67_vv v 6 ? v 67 ? v 7 ? v 66 ? 1 A A 9 1_555 A U 78 1_555 A G 65 1_555 A C 77 1_555 -0.192 -1.518 3.551 -0.394 11.110 35.848 -3.848 0.246 2.969 17.537 0.621 37.478 9 vv_A7G51:C63U66_vv v 7 ? v 66 ? v 51 ? v 63 ? 1 A G 65 1_555 A C 77 1_555 A G 66 1_555 A C 76 1_555 -0.080 -1.628 3.363 -0.341 6.288 36.310 -3.420 0.081 3.049 9.997 0.543 36.834 10 vv_G51G52:C62C63_vv v 51 ? v 63 ? v 52 ? v 62 ? 1 A G 66 1_555 A C 76 1_555 A G 67 1_555 A C 75 1_555 0.161 -1.841 3.378 1.482 6.387 31.928 -4.372 -0.034 2.969 11.460 -2.660 32.577 11 vv_G52G53:C61C62_vv v 52 ? v 62 ? v 53 ? v 61 ? 1 A G 67 1_555 A C 75 1_555 A U 68 1_555 A A 72 1_555 -2.665 -2.116 3.314 0.231 5.723 91.652 -1.583 1.860 3.202 3.987 -0.161 91.791 12 vv_G53U54:A58C61_vv v 53 ? v 61 ? v 54 ? v 58 ? 1 A U 68 1_555 A A 72 1_555 A U 69 1_555 A G 19 1_555 2.459 -2.087 3.408 2.837 2.929 41.562 -3.250 -3.138 3.413 4.116 -3.986 41.753 13 vv_U54U55:G18A58_vv v 54 ? v 58 ? v 55 ? v 18 ? 1 A A 40 1_555 A C 34 1_555 A U 41 1_555 A A 33 1_555 0.300 -1.234 3.549 2.445 7.823 50.090 -2.025 -0.167 3.344 9.169 -2.866 50.713 14 vv_A38U39:A31C32_vv v 38 ? v 32 ? v 39 ? v 31 ? 1 A U 41 1_555 A A 33 1_555 A U 42 1_555 A A 32 1_555 -0.042 -1.881 3.473 1.259 6.591 33.176 -4.304 0.277 3.050 11.399 -2.178 33.829 15 vv_U39U40:A30A31_vv v 39 ? v 31 ? v 40 ? v 30 ? 1 A U 42 1_555 A A 32 1_555 A C 43 1_555 A G 31 1_555 -0.025 -1.744 3.271 0.036 8.121 31.300 -4.479 0.050 2.744 14.743 -0.065 32.310 16 vv_U40C41:G29A30_vv v 40 ? v 30 ? v 41 ? v 29 ? 1 A C 43 1_555 A G 31 1_555 A C 44 1_555 A G 30 1_555 0.061 -1.896 3.330 0.406 8.719 28.721 -5.343 -0.040 2.653 17.085 -0.796 29.992 17 vv_C41C42:G28G29_vv v 41 ? v 29 ? v 42 ? v 28 ? 1 A C 44 1_555 A G 30 1_555 A U 45 1_555 A G 29 1_555 0.530 -1.579 3.383 1.202 4.331 38.330 -2.929 -0.652 3.207 6.568 -1.823 38.583 18 vv_C42U42A:G27G28_vv v 42 ? v 28 ? v 42 A v 27 ? 1 A U 45 1_555 A G 29 1_555 A G 47 1_555 A C 28 1_555 -2.037 -1.263 3.193 15.599 6.621 45.096 -1.999 3.557 2.217 8.295 -19.543 48.019 19 vv_U42AG44:C26G27_vv v 42 A v 27 ? v 44 ? v 26 ? 1 A G 47 1_555 A C 28 1_555 A U 12 1_555 A A 27 1_555 -0.492 -1.713 3.379 -2.086 4.204 28.779 -4.322 0.521 3.129 8.387 4.161 29.151 20 vv_G44U10:A25C26_vv v 44 ? v 26 ? v 10 ? v 25 ? 1 A U 12 1_555 A A 27 1_555 A C 13 1_555 A G 26 1_555 0.062 -1.451 3.389 0.240 4.042 38.682 -2.678 -0.064 3.228 6.082 -0.361 38.886 21 vv_U10C11:G24A25_vv v 10 ? v 25 ? v 11 ? v 24 ? 1 A C 13 1_555 A G 26 1_555 A U 14 1_555 A A 25 1_555 -0.432 -1.380 3.326 -1.655 7.672 36.283 -3.174 0.463 2.999 12.145 2.620 37.095 22 vv_C11U12:A23G24_vv v 11 ? v 24 ? v 12 ? v 23 ? 1 A U 14 1_555 A A 25 1_555 A A 15 1_555 A U 24 1_555 0.070 -1.275 3.060 -0.821 16.046 31.100 -4.185 -0.222 2.162 27.730 1.418 34.914 23 vv_U12A13:U22A23_vv v 12 ? v 23 ? v 13 ? v 22 ? 1 A A 15 1_555 A U 24 1_555 A U 16 1_555 A A 23 1_555 0.013 -1.546 3.347 -0.670 2.923 34.554 -3.044 -0.124 3.208 4.909 1.125 34.680 24 vv_A13U14:A21U22_vv v 13 ? v 22 ? v 14 ? v 21 ? 1 A U 16 1_555 A A 23 1_555 A C 17 1_555 A G 22 1_555 0.122 -1.415 3.109 1.694 4.483 29.456 -3.607 0.087 2.869 8.743 -3.303 29.835 25 vv_U14C15:G20AA21_vv v 14 ? v 21 ? v 15 ? v 20 A 1 A C 17 1_555 A G 22 1_555 A U 18 1_555 A U 73 1_555 -1.265 -0.026 3.463 -0.340 -1.010 128.542 -0.006 0.699 3.464 -0.560 0.188 128.545 26 vv_C15U16:U59G20A_vv v 15 ? v 20 A v 16 ? v 59 ? 1 A A 49 1_555 A U 64 1_555 A A 50 1_555 A U 63 1_555 -0.307 -1.550 3.434 -2.745 15.910 37.055 -3.983 0.147 2.597 23.703 4.089 40.306 27 vv_A46A47:U47MU48_vv v 46 ? v 48 ? v 47 ? v 47 M 1 A A 50 1_555 A U 63 1_555 A U 51 1_555 A A 62 1_555 1.160 -2.048 3.309 0.489 12.115 23.235 -7.373 -2.447 2.029 27.785 -1.121 26.170 28 vv_A47U47A:A47LU47M_vv v 47 ? v 47 M v 47 A v 47 L 1 A U 51 1_555 A A 62 1_555 A G 52 1_555 A C 61 1_555 0.080 -1.637 3.285 -0.604 4.693 33.437 -3.557 -0.232 3.032 8.107 1.044 33.760 29 vv_U47AG47B:C47KA47L_vv v 47 A v 47 L v 47 B v 47 K 1 A G 52 1_555 A C 61 1_555 A C 53 1_555 A G 60 1_555 -1.074 -1.503 3.240 -0.040 6.294 31.593 -3.773 1.929 2.896 11.419 0.072 32.198 30 vv_G47BC47C:G47JC47K_vv v 47 B v 47 K v 47 C v 47 J 1 A C 53 1_555 A G 60 1_555 A U 55 1_555 A C 59 1_555 1.958 -0.199 4.473 17.626 9.435 63.711 -0.725 -0.770 4.747 8.715 -16.281 66.457 31 vv_C47CU47E:C47IG47J_vv v 47 C v 47 J v 47 E v 47 I # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM122560' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM122560-05S1' 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM51266 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI15046 4 'Department of Energy (DOE, United States)' 'United States' DE-FG0298ER2031 5 'Cystic Fibrosis Foundation' 'United States' PUGLIS20G0 6 # _atom_sites.entry_id 7URM _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_