HEADER METAL BINDING PROTEIN 26-APR-22 7UTE TITLE MICROED STRUCTURE OF AEROPYRUM PERNIX PROTOGLOBIN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOGLOBLIN APPGB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 GENE: APE_0287; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MICROED, PROTOGLOBIN, HEME, METAL BINDING PROTEIN EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR E.DANELIUS,T.GONEN,J.T.UNGE REVDAT 4 03-APR-24 7UTE 1 REMARK REVDAT 3 14-FEB-24 7UTE 1 REMARK REVDAT 2 08-JUN-22 7UTE 1 JRNL REVDAT 1 25-MAY-22 7UTE 0 JRNL AUTH N.J.PORTER,E.DANELIUS,T.GONEN,F.H.ARNOLD JRNL TITL BIOCATALYTIC CARBENE TRANSFER USING DIAZIRINES. JRNL REF J.AM.CHEM.SOC. V. 144 8892 2022 JRNL REFN ESSN 1520-5126 JRNL PMID 35561334 JRNL DOI 10.1021/JACS.2C02723 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 71.8 REMARK 3 NUMBER OF REFLECTIONS : 33825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.8000 - 3.8100 0.73 2739 135 0.1418 0.1432 REMARK 3 2 3.8100 - 3.3300 0.75 2795 132 0.1636 0.1823 REMARK 3 3 3.3300 - 3.0300 0.74 2773 154 0.1894 0.2111 REMARK 3 4 3.0300 - 2.8100 0.74 2772 137 0.2071 0.2559 REMARK 3 5 2.8100 - 2.6500 0.73 2738 116 0.2087 0.2194 REMARK 3 6 2.6500 - 2.5100 0.73 2725 141 0.2209 0.2351 REMARK 3 7 2.5100 - 2.4000 0.71 2661 132 0.2314 0.2674 REMARK 3 8 2.4000 - 2.3100 0.70 2596 140 0.2237 0.2842 REMARK 3 9 2.3100 - 2.2300 0.70 2630 135 0.2324 0.2618 REMARK 3 10 2.2300 - 2.1600 0.69 2613 136 0.2320 0.2792 REMARK 3 11 2.1600 - 2.1000 0.68 2500 137 0.2317 0.2470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.234 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.896 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6504 REMARK 3 ANGLE : 1.558 8881 REMARK 3 CHIRALITY : 0.068 910 REMARK 3 PLANARITY : 0.012 1104 REMARK 3 DIHEDRAL : 17.124 865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.8517 -8.6464 -16.8894 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0277 REMARK 3 T33: 0.0168 T12: 0.0058 REMARK 3 T13: -0.0228 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.2918 L22: 0.3380 REMARK 3 L33: 0.0576 L12: 0.0548 REMARK 3 L13: -0.0604 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.0084 S13: -0.0074 REMARK 3 S21: 0.0176 S22: -0.0177 S23: -0.0023 REMARK 3 S31: 0.0029 S32: 0.0008 S33: -0.0153 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 6 through 12 or REMARK 3 resid 14 through 28 or resid 30 through REMARK 3 34 or resid 36 through 48 or resid 50 REMARK 3 through 53 or resid 55 through 61 or REMARK 3 resid 70 through 83 or resid 85 through REMARK 3 86 or resid 88 through 123 or resid 125 REMARK 3 through 195 or resid 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 6 through 12 or REMARK 3 resid 14 through 28 or resid 30 through REMARK 3 34 or resid 36 through 48 or resid 50 REMARK 3 through 53 or resid 55 through 61 or REMARK 3 resid 70 through 83 or resid 85 through REMARK 3 86 or resid 88 through 123 or resid 125 REMARK 3 through 148 or (resid 149 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 150 through 195 or resid 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 6 through 12 or REMARK 3 resid 14 through 28 or resid 30 through REMARK 3 34 or resid 36 through 48 or resid 50 REMARK 3 through 53 or resid 55 through 61 or REMARK 3 resid 70 through 83 or resid 85 through REMARK 3 86 or resid 88 through 123 or resid 125 REMARK 3 through 148 or (resid 149 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 150 through 195 or resid 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 6 through 12 or REMARK 3 resid 14 through 28 or resid 30 through REMARK 3 34 or resid 36 through 48 or resid 50 REMARK 3 through 53 or resid 55 through 61 or REMARK 3 resid 70 through 83 or resid 85 through REMARK 3 86 or resid 88 through 123 or resid 125 REMARK 3 through 148 or (resid 149 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 150 through 195 or resid 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264861. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 3D ARRAY REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 29-MAR-22 REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 240 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 34624 REMARK 240 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 240 RESOLUTION RANGE LOW (A) : 23.391 REMARK 240 DATA SCALING SOFTWARE : AIMLESS REMARK 240 COMPLETENESS FOR RANGE (%) : NULL REMARK 240 DATA REDUNDANCY : NULL REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :2.10 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :2.15 REMARK 240 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 240 DATA REDUNDANCY IN SHELL : NULL REMARK 240 R MERGE FOR SHELL (I) : NULL REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 240 SOFTWARE USED : PHASER REMARK 240 STARTING MODEL : PREDICTED MODEL FROM ALPHAFOLD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 TRP B 62 REMARK 465 ARG B 63 REMARK 465 ALA B 64 REMARK 465 SER B 65 REMARK 465 ASN B 66 REMARK 465 GLU B 67 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 PRO C 3 REMARK 465 SER C 4 REMARK 465 ASP C 5 REMARK 465 TRP C 62 REMARK 465 ARG C 63 REMARK 465 ALA C 64 REMARK 465 SER C 65 REMARK 465 ASN C 66 REMARK 465 GLU C 67 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 PRO D 3 REMARK 465 SER D 4 REMARK 465 ASP D 5 REMARK 465 TRP D 62 REMARK 465 ARG D 63 REMARK 465 ALA D 64 REMARK 465 SER D 65 REMARK 465 ASN D 66 REMARK 465 GLU D 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 13 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 29 CG CD CE NZ REMARK 470 LEU D 149 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 181 O HOH B 301 1.82 REMARK 500 OD2 ASP D 10 O HOH D 301 1.93 REMARK 500 OE1 GLU A 192 O HOH A 301 1.93 REMARK 500 O HOH D 352 O HOH D 357 1.94 REMARK 500 O GLU B 87 O HOH B 302 1.94 REMARK 500 O ALA B 91 O HOH B 303 1.96 REMARK 500 O HOH B 330 O HOH B 342 1.98 REMARK 500 NE ARG C 132 O HOH C 301 1.99 REMARK 500 O HOH D 371 O HOH D 373 2.01 REMARK 500 O HOH B 311 O HOH B 345 2.01 REMARK 500 O HOH D 366 O HOH D 374 2.01 REMARK 500 NH2 ARG A 13 O HOH A 302 2.05 REMARK 500 OH TYR C 72 O HOH C 302 2.07 REMARK 500 NZ LYS A 16 O HOH A 303 2.07 REMARK 500 OH TYR B 72 O HOH B 304 2.08 REMARK 500 O HOH D 311 O HOH D 353 2.08 REMARK 500 O HOH D 348 O HOH D 354 2.11 REMARK 500 O HOH B 334 O HOH B 354 2.13 REMARK 500 O HOH B 343 O HOH C 318 2.13 REMARK 500 O HOH D 346 O HOH D 365 2.14 REMARK 500 ND2 ASN D 193 O HOH D 302 2.15 REMARK 500 O2D HEM C 201 O HOH C 303 2.15 REMARK 500 O HOH A 318 O HOH A 350 2.16 REMARK 500 OXT TRP B 195 O HOH B 305 2.16 REMARK 500 O GLU A 192 O HOH A 304 2.17 REMARK 500 O HOH C 309 O HOH C 332 2.18 REMARK 500 OD1 ASP D 194 O HOH D 303 2.18 REMARK 500 O HIS C 68 O HOH C 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 18 41.05 -80.81 REMARK 500 ALA A 64 -144.50 -95.14 REMARK 500 GLU A 67 -143.21 -102.08 REMARK 500 HIS A 68 80.57 -52.27 REMARK 500 HIS A 68 79.27 -50.82 REMARK 500 LEU A 69 -24.31 -173.04 REMARK 500 ASN A 106 -167.82 -111.95 REMARK 500 ASN A 193 -10.64 92.11 REMARK 500 PRO B 18 41.05 -80.81 REMARK 500 ASN B 106 -167.82 -111.95 REMARK 500 ASN B 193 -10.64 92.11 REMARK 500 PRO C 18 41.05 -80.81 REMARK 500 ASN C 106 -167.82 -111.95 REMARK 500 ASN C 193 -10.64 92.11 REMARK 500 PRO D 18 41.05 -80.81 REMARK 500 ASN D 106 -167.82 -111.95 REMARK 500 ASN D 193 -10.64 92.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 359 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH D 372 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH D 373 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH D 374 DISTANCE = 6.17 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HEM A 201 NA 85.4 REMARK 620 3 HEM A 201 NB 91.1 85.3 REMARK 620 4 HEM A 201 NC 102.2 169.9 87.9 REMARK 620 5 HEM A 201 ND 99.5 89.1 167.5 96.1 REMARK 620 6 IMD A 202 N3 165.2 84.0 77.8 87.3 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HEM B 201 NA 98.6 REMARK 620 3 HEM B 201 NB 105.5 95.5 REMARK 620 4 HEM B 201 NC 90.5 169.4 87.4 REMARK 620 5 HEM B 201 ND 79.9 90.9 170.9 85.2 REMARK 620 6 IMD B 202 N3 160.1 93.3 88.9 76.4 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 120 NE2 REMARK 620 2 HEM C 201 NA 96.4 REMARK 620 3 HEM C 201 NB 101.9 93.5 REMARK 620 4 HEM C 201 NC 91.6 171.1 88.7 REMARK 620 5 HEM C 201 ND 84.0 86.7 174.1 90.3 REMARK 620 6 IMD C 202 N3 164.0 89.9 92.3 81.4 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 120 NE2 REMARK 620 2 HEM D 201 NA 94.1 REMARK 620 3 HEM D 201 NB 103.4 96.5 REMARK 620 4 HEM D 201 NC 90.9 172.5 87.7 REMARK 620 5 HEM D 201 ND 79.2 86.8 175.6 88.7 REMARK 620 6 IMD D 202 N3 161.0 94.4 92.5 79.2 84.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26768 RELATED DB: EMDB REMARK 900 MICROED STRUCTURE OF AEROPYRUM PERNIX PROTOGLOBIN MUTANT DBREF 7UTE A 1 195 UNP Q9YFF4 Q9YFF4_AERPE 1 195 DBREF 7UTE B 1 195 UNP Q9YFF4 Q9YFF4_AERPE 1 195 DBREF 7UTE C 1 195 UNP Q9YFF4 Q9YFF4_AERPE 1 195 DBREF 7UTE D 1 195 UNP Q9YFF4 Q9YFF4_AERPE 1 195 SEQADV 7UTE GLY A 45 UNP Q9YFF4 CYS 45 CONFLICT SEQADV 7UTE LEU A 59 UNP Q9YFF4 TRP 59 CONFLICT SEQADV 7UTE VAL A 60 UNP Q9YFF4 TYR 60 CONFLICT SEQADV 7UTE ARG A 63 UNP Q9YFF4 VAL 63 CONFLICT SEQADV 7UTE SER A 102 UNP Q9YFF4 CYS 102 CONFLICT SEQADV 7UTE GLN A 145 UNP Q9YFF4 PHE 145 CONFLICT SEQADV 7UTE LEU A 149 UNP Q9YFF4 ILE 149 CONFLICT SEQADV 7UTE GLY B 45 UNP Q9YFF4 CYS 45 CONFLICT SEQADV 7UTE LEU B 59 UNP Q9YFF4 TRP 59 CONFLICT SEQADV 7UTE VAL B 60 UNP Q9YFF4 TYR 60 CONFLICT SEQADV 7UTE ARG B 63 UNP Q9YFF4 VAL 63 CONFLICT SEQADV 7UTE SER B 102 UNP Q9YFF4 CYS 102 CONFLICT SEQADV 7UTE GLN B 145 UNP Q9YFF4 PHE 145 CONFLICT SEQADV 7UTE LEU B 149 UNP Q9YFF4 ILE 149 CONFLICT SEQADV 7UTE GLY C 45 UNP Q9YFF4 CYS 45 CONFLICT SEQADV 7UTE LEU C 59 UNP Q9YFF4 TRP 59 CONFLICT SEQADV 7UTE VAL C 60 UNP Q9YFF4 TYR 60 CONFLICT SEQADV 7UTE ARG C 63 UNP Q9YFF4 VAL 63 CONFLICT SEQADV 7UTE SER C 102 UNP Q9YFF4 CYS 102 CONFLICT SEQADV 7UTE GLN C 145 UNP Q9YFF4 PHE 145 CONFLICT SEQADV 7UTE LEU C 149 UNP Q9YFF4 ILE 149 CONFLICT SEQADV 7UTE GLY D 45 UNP Q9YFF4 CYS 45 CONFLICT SEQADV 7UTE LEU D 59 UNP Q9YFF4 TRP 59 CONFLICT SEQADV 7UTE VAL D 60 UNP Q9YFF4 TYR 60 CONFLICT SEQADV 7UTE ARG D 63 UNP Q9YFF4 VAL 63 CONFLICT SEQADV 7UTE SER D 102 UNP Q9YFF4 CYS 102 CONFLICT SEQADV 7UTE GLN D 145 UNP Q9YFF4 PHE 145 CONFLICT SEQADV 7UTE LEU D 149 UNP Q9YFF4 ILE 149 CONFLICT SEQRES 1 A 195 MET THR PRO SER ASP ILE PRO GLY TYR ASP TYR GLY ARG SEQRES 2 A 195 VAL GLU LYS SER PRO ILE THR ASP LEU GLU PHE ASP LEU SEQRES 3 A 195 LEU LYS LYS THR VAL MET LEU GLY GLU LYS ASP VAL MET SEQRES 4 A 195 TYR LEU LYS LYS ALA GLY ASP VAL LEU LYS ASP GLN VAL SEQRES 5 A 195 ASP GLU ILE LEU ASP LEU LEU VAL GLY TRP ARG ALA SER SEQRES 6 A 195 ASN GLU HIS LEU ILE TYR TYR PHE SER ASN PRO ASP THR SEQRES 7 A 195 GLY GLU PRO ILE LYS GLU TYR LEU GLU ARG VAL ARG ALA SEQRES 8 A 195 ARG PHE GLY ALA TRP ILE LEU ASP THR THR SER ARG ASP SEQRES 9 A 195 TYR ASN ARG GLU TRP LEU ASP TYR GLN TYR GLU VAL GLY SEQRES 10 A 195 LEU ARG HIS HIS ARG SER LYS LYS GLY VAL THR ASP GLY SEQRES 11 A 195 VAL ARG THR VAL PRO HIS ILE PRO LEU ARG TYR LEU ILE SEQRES 12 A 195 ALA GLN ILE TYR PRO LEU THR ALA THR ILE LYS PRO PHE SEQRES 13 A 195 LEU ALA LYS LYS GLY GLY SER PRO GLU ASP ILE GLU GLY SEQRES 14 A 195 MET TYR ASN ALA TRP PHE LYS SER VAL VAL LEU GLN VAL SEQRES 15 A 195 ALA ILE TRP SER HIS PRO TYR THR LYS GLU ASN ASP TRP SEQRES 1 B 195 MET THR PRO SER ASP ILE PRO GLY TYR ASP TYR GLY ARG SEQRES 2 B 195 VAL GLU LYS SER PRO ILE THR ASP LEU GLU PHE ASP LEU SEQRES 3 B 195 LEU LYS LYS THR VAL MET LEU GLY GLU LYS ASP VAL MET SEQRES 4 B 195 TYR LEU LYS LYS ALA GLY ASP VAL LEU LYS ASP GLN VAL SEQRES 5 B 195 ASP GLU ILE LEU ASP LEU LEU VAL GLY TRP ARG ALA SER SEQRES 6 B 195 ASN GLU HIS LEU ILE TYR TYR PHE SER ASN PRO ASP THR SEQRES 7 B 195 GLY GLU PRO ILE LYS GLU TYR LEU GLU ARG VAL ARG ALA SEQRES 8 B 195 ARG PHE GLY ALA TRP ILE LEU ASP THR THR SER ARG ASP SEQRES 9 B 195 TYR ASN ARG GLU TRP LEU ASP TYR GLN TYR GLU VAL GLY SEQRES 10 B 195 LEU ARG HIS HIS ARG SER LYS LYS GLY VAL THR ASP GLY SEQRES 11 B 195 VAL ARG THR VAL PRO HIS ILE PRO LEU ARG TYR LEU ILE SEQRES 12 B 195 ALA GLN ILE TYR PRO LEU THR ALA THR ILE LYS PRO PHE SEQRES 13 B 195 LEU ALA LYS LYS GLY GLY SER PRO GLU ASP ILE GLU GLY SEQRES 14 B 195 MET TYR ASN ALA TRP PHE LYS SER VAL VAL LEU GLN VAL SEQRES 15 B 195 ALA ILE TRP SER HIS PRO TYR THR LYS GLU ASN ASP TRP SEQRES 1 C 195 MET THR PRO SER ASP ILE PRO GLY TYR ASP TYR GLY ARG SEQRES 2 C 195 VAL GLU LYS SER PRO ILE THR ASP LEU GLU PHE ASP LEU SEQRES 3 C 195 LEU LYS LYS THR VAL MET LEU GLY GLU LYS ASP VAL MET SEQRES 4 C 195 TYR LEU LYS LYS ALA GLY ASP VAL LEU LYS ASP GLN VAL SEQRES 5 C 195 ASP GLU ILE LEU ASP LEU LEU VAL GLY TRP ARG ALA SER SEQRES 6 C 195 ASN GLU HIS LEU ILE TYR TYR PHE SER ASN PRO ASP THR SEQRES 7 C 195 GLY GLU PRO ILE LYS GLU TYR LEU GLU ARG VAL ARG ALA SEQRES 8 C 195 ARG PHE GLY ALA TRP ILE LEU ASP THR THR SER ARG ASP SEQRES 9 C 195 TYR ASN ARG GLU TRP LEU ASP TYR GLN TYR GLU VAL GLY SEQRES 10 C 195 LEU ARG HIS HIS ARG SER LYS LYS GLY VAL THR ASP GLY SEQRES 11 C 195 VAL ARG THR VAL PRO HIS ILE PRO LEU ARG TYR LEU ILE SEQRES 12 C 195 ALA GLN ILE TYR PRO LEU THR ALA THR ILE LYS PRO PHE SEQRES 13 C 195 LEU ALA LYS LYS GLY GLY SER PRO GLU ASP ILE GLU GLY SEQRES 14 C 195 MET TYR ASN ALA TRP PHE LYS SER VAL VAL LEU GLN VAL SEQRES 15 C 195 ALA ILE TRP SER HIS PRO TYR THR LYS GLU ASN ASP TRP SEQRES 1 D 195 MET THR PRO SER ASP ILE PRO GLY TYR ASP TYR GLY ARG SEQRES 2 D 195 VAL GLU LYS SER PRO ILE THR ASP LEU GLU PHE ASP LEU SEQRES 3 D 195 LEU LYS LYS THR VAL MET LEU GLY GLU LYS ASP VAL MET SEQRES 4 D 195 TYR LEU LYS LYS ALA GLY ASP VAL LEU LYS ASP GLN VAL SEQRES 5 D 195 ASP GLU ILE LEU ASP LEU LEU VAL GLY TRP ARG ALA SER SEQRES 6 D 195 ASN GLU HIS LEU ILE TYR TYR PHE SER ASN PRO ASP THR SEQRES 7 D 195 GLY GLU PRO ILE LYS GLU TYR LEU GLU ARG VAL ARG ALA SEQRES 8 D 195 ARG PHE GLY ALA TRP ILE LEU ASP THR THR SER ARG ASP SEQRES 9 D 195 TYR ASN ARG GLU TRP LEU ASP TYR GLN TYR GLU VAL GLY SEQRES 10 D 195 LEU ARG HIS HIS ARG SER LYS LYS GLY VAL THR ASP GLY SEQRES 11 D 195 VAL ARG THR VAL PRO HIS ILE PRO LEU ARG TYR LEU ILE SEQRES 12 D 195 ALA GLN ILE TYR PRO LEU THR ALA THR ILE LYS PRO PHE SEQRES 13 D 195 LEU ALA LYS LYS GLY GLY SER PRO GLU ASP ILE GLU GLY SEQRES 14 D 195 MET TYR ASN ALA TRP PHE LYS SER VAL VAL LEU GLN VAL SEQRES 15 D 195 ALA ILE TRP SER HIS PRO TYR THR LYS GLU ASN ASP TRP HET HEM A 201 43 HET IMD A 202 5 HET HEM B 201 43 HET IMD B 202 5 HET HEM C 201 43 HET IMD C 202 5 HET HEM D 201 43 HET IMD D 202 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IMD IMIDAZOLE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 IMD 4(C3 H5 N2 1+) FORMUL 13 HOH *240(H2 O) HELIX 1 AA1 THR A 20 VAL A 31 1 12 HELIX 2 AA2 GLY A 34 LYS A 49 1 16 HELIX 3 AA3 GLN A 51 VAL A 60 1 10 HELIX 4 AA4 LEU A 69 SER A 74 5 6 HELIX 5 AA5 ILE A 82 ARG A 103 1 22 HELIX 6 AA6 ASN A 106 HIS A 121 1 16 HELIX 7 AA7 PRO A 138 LYS A 160 1 23 HELIX 8 AA8 SER A 163 SER A 186 1 24 HELIX 9 AA9 THR B 20 VAL B 31 1 12 HELIX 10 AB1 GLY B 34 LYS B 49 1 16 HELIX 11 AB2 GLN B 51 VAL B 60 1 10 HELIX 12 AB3 HIS B 68 SER B 74 5 7 HELIX 13 AB4 ILE B 82 ARG B 103 1 22 HELIX 14 AB5 ASN B 106 HIS B 121 1 16 HELIX 15 AB6 PRO B 138 LYS B 160 1 23 HELIX 16 AB7 SER B 163 SER B 186 1 24 HELIX 17 AB8 THR C 20 VAL C 31 1 12 HELIX 18 AB9 GLY C 34 LYS C 49 1 16 HELIX 19 AC1 GLN C 51 VAL C 60 1 10 HELIX 20 AC2 LEU C 69 SER C 74 5 6 HELIX 21 AC3 ILE C 82 ARG C 103 1 22 HELIX 22 AC4 ASN C 106 HIS C 121 1 16 HELIX 23 AC5 PRO C 138 LYS C 160 1 23 HELIX 24 AC6 SER C 163 SER C 186 1 24 HELIX 25 AC7 THR D 20 VAL D 31 1 12 HELIX 26 AC8 GLY D 34 LYS D 49 1 16 HELIX 27 AC9 GLN D 51 VAL D 60 1 10 HELIX 28 AD1 LEU D 69 SER D 74 5 6 HELIX 29 AD2 ILE D 82 ARG D 103 1 22 HELIX 30 AD3 ASN D 106 HIS D 121 1 16 HELIX 31 AD4 PRO D 138 LYS D 160 1 23 HELIX 32 AD5 SER D 163 SER D 186 1 24 LINK NE2 HIS A 120 FE HEM A 201 1555 1555 2.06 LINK FE HEM A 201 N3 IMD A 202 1555 1555 2.26 LINK NE2 HIS B 120 FE HEM B 201 1555 1555 2.00 LINK FE HEM B 201 N3 IMD B 202 1555 1555 2.35 LINK NE2 HIS C 120 FE HEM C 201 1555 1555 2.01 LINK FE HEM C 201 N3 IMD C 202 1555 1555 2.32 LINK NE2 HIS D 120 FE HEM D 201 1555 1555 2.00 LINK FE HEM D 201 N3 IMD D 202 1555 1555 2.35 CRYST1 46.246 58.305 80.732 104.08 98.59 90.10 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021623 0.000038 0.003380 0.00000 SCALE2 0.000000 0.017151 0.004359 0.00000 SCALE3 0.000000 0.000000 0.012925 0.00000 MTRIX1 1 -0.999995 -0.003172 0.000875 11.59221 1 MTRIX2 1 -0.003179 0.999954 -0.009026 -29.26464 1 MTRIX3 1 -0.000847 -0.009029 -0.999959 -34.05273 1 MTRIX1 2 -0.999998 -0.001653 0.000577 34.70069 1 MTRIX2 2 0.001657 -0.999984 0.005474 -17.30826 1 MTRIX3 2 0.000568 0.005475 0.999985 -0.05514 1 MTRIX1 3 0.999999 0.001464 -0.000341 -23.13261 1 MTRIX2 3 0.001465 -0.999997 0.001815 11.80187 1 MTRIX3 3 -0.000338 -0.001816 -0.999998 -34.19075 1