HEADER HYDROLASE/RNA 28-APR-22 7UU3 TITLE CRYSTAL STRUCTURE OF APOBEC3G COMPLEX WITH 3'OVERHANGS RNA-COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3G; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEOXYCYTIDINE DEAMINASE; COMPND 5 EC: 3.5.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*CP*CP*CP*AP*CP*GP*GP*GP*AP*AP*U)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA (5'-R(*CP*CP*CP*GP*UP*GP*GP*GP*AP*AP*U)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: APOBEC3G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DEAMINASE, APOBEC, HYDROLASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,S.LI,X.S.CHEN REVDAT 3 25-OCT-23 7UU3 1 REMARK REVDAT 2 16-AUG-23 7UU3 1 AUTHOR REVDAT 1 11-JAN-23 7UU3 0 JRNL AUTH H.YANG,K.KIM,S.LI,J.PACHECO,X.S.CHEN JRNL TITL STRUCTURAL BASIS OF SEQUENCE-SPECIFIC RNA RECOGNITION BY THE JRNL TITL 2 ANTIVIRAL FACTOR APOBEC3G. JRNL REF NAT COMMUN V. 13 7498 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36470880 JRNL DOI 10.1038/S41467-022-35201-9 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 18668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6950 - 7.2772 0.99 1306 145 0.1202 0.1475 REMARK 3 2 7.2772 - 5.7798 0.99 1309 146 0.1662 0.2266 REMARK 3 3 5.7798 - 5.0503 0.99 1287 143 0.1558 0.2110 REMARK 3 4 5.0503 - 4.5890 0.99 1311 146 0.1397 0.1812 REMARK 3 5 4.5890 - 4.2603 0.99 1320 146 0.1446 0.1822 REMARK 3 6 4.2603 - 4.0093 0.99 1294 144 0.1648 0.2020 REMARK 3 7 4.0093 - 3.8086 0.99 1295 145 0.2034 0.2332 REMARK 3 8 3.8086 - 3.6429 0.99 1320 146 0.1995 0.2377 REMARK 3 9 3.6429 - 3.5027 0.99 1297 145 0.2129 0.2376 REMARK 3 10 3.5027 - 3.3819 0.99 1264 140 0.2172 0.2447 REMARK 3 11 3.3819 - 3.2762 0.98 1309 146 0.2391 0.3406 REMARK 3 12 3.2762 - 3.1826 0.98 1264 140 0.2774 0.2903 REMARK 3 13 3.1826 - 3.0990 0.92 1224 136 0.2950 0.3663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1863 -31.6582 -39.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.7519 T22: 0.5803 REMARK 3 T33: 0.6801 T12: 0.0814 REMARK 3 T13: 0.0411 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 1.0111 L22: 0.9703 REMARK 3 L33: 1.2480 L12: 0.2002 REMARK 3 L13: -0.2879 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: 0.1013 S13: -0.1153 REMARK 3 S21: -0.4426 S22: -0.1753 S23: 0.0755 REMARK 3 S31: 0.7076 S32: 0.1005 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7644 -14.2558 -29.2210 REMARK 3 T TENSOR REMARK 3 T11: 0.4343 T22: 0.3872 REMARK 3 T33: 0.4699 T12: 0.0322 REMARK 3 T13: -0.0343 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.8487 L22: 2.4728 REMARK 3 L33: 1.1225 L12: -0.4731 REMARK 3 L13: -0.8682 L23: 0.7064 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0141 S13: 0.0325 REMARK 3 S21: -0.2188 S22: -0.1868 S23: 0.2187 REMARK 3 S31: 0.0977 S32: -0.0681 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 288 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1735 3.8895 -15.6662 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 0.4882 REMARK 3 T33: 0.5327 T12: -0.0216 REMARK 3 T13: 0.0666 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.5154 L22: 2.9915 REMARK 3 L33: 1.3612 L12: 0.3191 REMARK 3 L13: -0.1900 L23: 0.4823 REMARK 3 S TENSOR REMARK 3 S11: 0.2078 S12: -0.0108 S13: 0.1113 REMARK 3 S21: 0.3815 S22: -0.2024 S23: 0.1886 REMARK 3 S31: -0.1802 S32: 0.1866 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7859 -39.8210 -11.6669 REMARK 3 T TENSOR REMARK 3 T11: 0.5234 T22: 0.6730 REMARK 3 T33: 0.5027 T12: -0.0272 REMARK 3 T13: -0.0002 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4248 L22: 0.7952 REMARK 3 L33: 0.7431 L12: 0.6792 REMARK 3 L13: 0.1859 L23: 0.2500 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: 0.3112 S13: 0.1142 REMARK 3 S21: -0.3630 S22: -0.1169 S23: -0.0214 REMARK 3 S31: -0.1701 S32: -0.2641 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.2926 -49.7825 -4.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.4368 T22: 0.5747 REMARK 3 T33: 0.5763 T12: -0.0513 REMARK 3 T13: 0.0241 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 0.6981 L22: 1.0869 REMARK 3 L33: 0.0053 L12: 0.2608 REMARK 3 L13: 0.2410 L23: -0.1623 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.0241 S13: -0.4481 REMARK 3 S21: -0.0517 S22: -0.0079 S23: -0.3213 REMARK 3 S31: -0.1207 S32: 0.0550 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6143 -35.5362 -2.4984 REMARK 3 T TENSOR REMARK 3 T11: 0.5398 T22: 0.5728 REMARK 3 T33: 0.4384 T12: -0.0015 REMARK 3 T13: 0.0147 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.6510 L22: 2.1971 REMARK 3 L33: 0.1361 L12: 0.1453 REMARK 3 L13: 0.2289 L23: 0.5797 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.1347 S13: 0.1187 REMARK 3 S21: -0.0857 S22: 0.0488 S23: -0.2154 REMARK 3 S31: -0.1458 S32: 0.0452 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5974 -18.7272 14.3535 REMARK 3 T TENSOR REMARK 3 T11: 0.8835 T22: 0.8230 REMARK 3 T33: 0.7754 T12: -0.1729 REMARK 3 T13: -0.0268 T23: -0.1273 REMARK 3 L TENSOR REMARK 3 L11: 0.1330 L22: 0.2482 REMARK 3 L33: 0.4081 L12: 0.2521 REMARK 3 L13: -0.1920 L23: 0.2681 REMARK 3 S TENSOR REMARK 3 S11: 0.4455 S12: -0.4019 S13: -0.0591 REMARK 3 S21: 0.8778 S22: -0.0641 S23: -0.3097 REMARK 3 S31: -0.3169 S32: 0.1879 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.9417 -13.6326 15.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.9273 T22: 0.6897 REMARK 3 T33: 0.5826 T12: -0.0342 REMARK 3 T13: -0.0994 T23: -0.1527 REMARK 3 L TENSOR REMARK 3 L11: 1.6851 L22: 2.5523 REMARK 3 L33: 1.4483 L12: 0.5976 REMARK 3 L13: 0.3176 L23: -0.3613 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: -0.3446 S13: 0.2417 REMARK 3 S21: 0.3835 S22: 0.0250 S23: -0.1648 REMARK 3 S31: -0.5757 S32: 0.1636 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3768 -22.0662 -20.2289 REMARK 3 T TENSOR REMARK 3 T11: 0.8017 T22: 1.0967 REMARK 3 T33: 1.1148 T12: 0.0759 REMARK 3 T13: -0.1975 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: -0.0223 L22: 0.2339 REMARK 3 L33: 0.3505 L12: -0.2237 REMARK 3 L13: 0.5071 L23: -0.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.3496 S12: 0.0495 S13: -0.2258 REMARK 3 S21: -0.0768 S22: 0.6504 S23: -0.4432 REMARK 3 S31: 0.6310 S32: 0.3376 S33: 0.0005 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7458 -28.4060 -9.4071 REMARK 3 T TENSOR REMARK 3 T11: 0.8234 T22: 1.1474 REMARK 3 T33: 0.9360 T12: 0.1698 REMARK 3 T13: -0.1709 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: -0.0632 L22: -0.0054 REMARK 3 L33: 0.2646 L12: -0.1713 REMARK 3 L13: 0.3092 L23: -0.2256 REMARK 3 S TENSOR REMARK 3 S11: -0.1018 S12: 0.7086 S13: 0.1579 REMARK 3 S21: -0.2387 S22: -0.5318 S23: 0.8451 REMARK 3 S31: -0.4487 S32: -0.5493 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 8 THROUGH 60 OR RESID REMARK 3 65 THROUGH 71 OR RESID 73 THROUGH 194 OR REMARK 3 RESID 196 THROUGH 235 OR RESID 237 REMARK 3 THROUGH 328 OR RESID 330 THROUGH 806)) REMARK 3 SELECTION : (CHAIN B AND (RESID 8 THROUGH 60 OR RESID REMARK 3 65 THROUGH 71 OR RESID 73 THROUGH 194 OR REMARK 3 RESID 196 THROUGH 235 OR RESID 237 REMARK 3 THROUGH 328 OR RESID 330 THROUGH 806)) REMARK 3 ATOM PAIRS NUMBER : 3550 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61081 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.3, 12% PEG 20K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 ILE A 5 REMARK 465 ARG A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 381 REMARK 465 GLY A 382 REMARK 465 ASN A 383 REMARK 465 GLY B -6 REMARK 465 PRO B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 ILE B 5 REMARK 465 ARG B 6 REMARK 465 GLN B 381 REMARK 465 GLY B 382 REMARK 465 ASN B 383 REMARK 465 U C 12 REMARK 465 U C 13 REMARK 465 U C 14 REMARK 465 U D 12 REMARK 465 U D 13 REMARK 465 U D 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 380 CG OD1 ND2 REMARK 470 ASN B 380 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 60 96.03 -64.41 REMARK 500 LYS A 61 76.39 -113.24 REMARK 500 ASP A 111 77.64 -164.32 REMARK 500 ASN A 229 -116.74 62.84 REMARK 500 ASN A 236 75.09 -61.01 REMARK 500 GLN A 237 -19.70 -173.63 REMARK 500 ASP A 272 -166.21 -79.76 REMARK 500 GLN A 379 43.91 -97.37 REMARK 500 MET B 8 28.90 -67.27 REMARK 500 ASP B 111 78.16 -164.64 REMARK 500 ASN B 229 -111.18 58.01 REMARK 500 ASN B 236 64.46 -68.72 REMARK 500 GLN B 237 -20.25 -152.64 REMARK 500 ASP B 272 -169.26 -73.93 REMARK 500 ASP B 330 11.42 -68.12 REMARK 500 GLN B 379 45.54 -102.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 60 LYS A 61 129.66 REMARK 500 LYS A 61 ALA A 62 -149.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 72 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 CYS A 97 SG 110.8 REMARK 620 3 CYS A 100 SG 103.2 104.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 257 ND1 REMARK 620 2 CYS A 287 SG 96.3 REMARK 620 3 CYS A 290 SG 83.2 93.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 65 ND1 REMARK 620 2 CYS B 97 SG 113.4 REMARK 620 3 CYS B 100 SG 104.4 109.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 257 ND1 REMARK 620 2 CYS B 287 SG 98.4 REMARK 620 3 CYS B 290 SG 90.4 82.0 REMARK 620 N 1 2 DBREF 7UU3 A 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 DBREF 7UU3 B 1 383 UNP M1GSK9 M1GSK9_MACMU 1 383 DBREF 7UU3 C 1 14 PDB 7UU3 7UU3 1 14 DBREF 7UU3 D 1 14 PDB 7UU3 7UU3 1 14 SEQADV 7UU3 GLY A -6 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 PRO A -5 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY A -4 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY A -3 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 SER A -2 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY A -1 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY A 0 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 ALA A 139 UNP M1GSK9 CYS 139 CONFLICT SEQADV 7UU3 GLU A 140 UNP M1GSK9 GLN 140 CONFLICT SEQADV 7UU3 ALA A 141 UNP M1GSK9 LYS 141 CONFLICT SEQADV 7UU3 GLY A 142 UNP M1GSK9 ARG 142 CONFLICT SEQADV 7UU3 A UNP M1GSK9 ASP 143 DELETION SEQADV 7UU3 A UNP M1GSK9 GLY 144 DELETION SEQADV 7UU3 A UNP M1GSK9 PRO 145 DELETION SEQADV 7UU3 A UNP M1GSK9 HIS 146 DELETION SEQADV 7UU3 ALA A 259 UNP M1GSK9 GLU 259 CONFLICT SEQADV 7UU3 GLY B -6 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 PRO B -5 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY B -4 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY B -3 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 SER B -2 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY B -1 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 GLY B 0 UNP M1GSK9 EXPRESSION TAG SEQADV 7UU3 ALA B 139 UNP M1GSK9 CYS 139 CONFLICT SEQADV 7UU3 GLU B 140 UNP M1GSK9 GLN 140 CONFLICT SEQADV 7UU3 ALA B 141 UNP M1GSK9 LYS 141 CONFLICT SEQADV 7UU3 GLY B 142 UNP M1GSK9 ARG 142 CONFLICT SEQADV 7UU3 B UNP M1GSK9 ASP 143 DELETION SEQADV 7UU3 B UNP M1GSK9 GLY 144 DELETION SEQADV 7UU3 B UNP M1GSK9 PRO 145 DELETION SEQADV 7UU3 B UNP M1GSK9 HIS 146 DELETION SEQADV 7UU3 ALA B 259 UNP M1GSK9 GLU 259 CONFLICT SEQRES 1 A 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 A 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 A 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 A 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 A 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 A 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 A 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 A 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 A 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 A 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 A 386 TYR TYR PHE TRP LYS PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 A 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 A 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 A 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 A 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 A 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 A 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 A 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 A 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 A 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 A 386 ALA ALA LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 A 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 A 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 A 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 A 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 A 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 A 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 A 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 A 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 A 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN SEQRES 1 B 386 GLY PRO GLY GLY SER GLY GLY MET LYS PRO GLN ILE ARG SEQRES 2 B 386 ASN MET VAL GLU PRO MET ASP PRO ARG THR PHE VAL SER SEQRES 3 B 386 ASN PHE ASN ASN ARG PRO ILE LEU SER GLY LEU ASP THR SEQRES 4 B 386 VAL TRP LEU CYS CYS GLU VAL LYS THR LYS ASP PRO SER SEQRES 5 B 386 GLY PRO PRO LEU ASP ALA LYS ILE PHE GLN GLY LYS VAL SEQRES 6 B 386 TYR PRO LYS ALA LYS TYR HIS PRO GLU MET ARG PHE LEU SEQRES 7 B 386 ARG TRP PHE HIS LYS TRP ARG GLN LEU HIS HIS ASP GLN SEQRES 8 B 386 GLU TYR LYS VAL THR TRP TYR VAL SER TRP SER PRO CYS SEQRES 9 B 386 THR ARG CYS ALA ASN SER VAL ALA THR PHE LEU ALA LYS SEQRES 10 B 386 ASP PRO LYS VAL THR LEU THR ILE PHE VAL ALA ARG LEU SEQRES 11 B 386 TYR TYR PHE TRP LYS PRO ASP TYR GLN GLN ALA LEU ARG SEQRES 12 B 386 ILE LEU ALA GLU ALA GLY ALA THR MET LYS ILE MET ASN SEQRES 13 B 386 TYR ASN GLU PHE GLN ASP CYS TRP ASN LYS PHE VAL ASP SEQRES 14 B 386 GLY ARG GLY LYS PRO PHE LYS PRO TRP ASN ASN LEU PRO SEQRES 15 B 386 LYS HIS TYR THR LEU LEU GLN ALA THR LEU GLY GLU LEU SEQRES 16 B 386 LEU ARG HIS LEU MET ASP PRO GLY THR PHE THR SER ASN SEQRES 17 B 386 PHE ASN ASN LYS PRO TRP VAL SER GLY GLN HIS GLU THR SEQRES 18 B 386 TYR LEU CYS TYR LYS VAL GLU ARG LEU HIS ASN ASP THR SEQRES 19 B 386 TRP VAL PRO LEU ASN GLN HIS ARG GLY PHE LEU ARG ASN SEQRES 20 B 386 GLN ALA PRO ASN ILE HIS GLY PHE PRO LYS GLY ARG HIS SEQRES 21 B 386 ALA ALA LEU CYS PHE LEU ASP LEU ILE PRO PHE TRP LYS SEQRES 22 B 386 LEU ASP GLY GLN GLN TYR ARG VAL THR CYS PHE THR SER SEQRES 23 B 386 TRP SER PRO CYS PHE SER CYS ALA GLN GLU MET ALA LYS SEQRES 24 B 386 PHE ILE SER ASN ASN GLU HIS VAL SER LEU CYS ILE PHE SEQRES 25 B 386 ALA ALA ARG ILE TYR ASP ASP GLN GLY ARG TYR GLN GLU SEQRES 26 B 386 GLY LEU ARG THR LEU HIS ARG ASP GLY ALA LYS ILE ALA SEQRES 27 B 386 MET MET ASN TYR SER GLU PHE GLU TYR CYS TRP ASP THR SEQRES 28 B 386 PHE VAL ASP ARG GLN GLY ARG PRO PHE GLN PRO TRP ASP SEQRES 29 B 386 GLY LEU ASP GLU HIS SER GLN ALA LEU SER GLY ARG LEU SEQRES 30 B 386 ARG ALA ILE LEU GLN ASN GLN GLY ASN SEQRES 1 C 14 C C C A C G G G A A U U U SEQRES 2 C 14 U SEQRES 1 D 14 C C C G U G G G A A U U U SEQRES 2 D 14 U HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) HELIX 1 AA1 ASP A 13 PHE A 21 1 9 HELIX 2 AA2 LYS A 61 TYR A 64 5 4 HELIX 3 AA3 HIS A 65 LEU A 80 1 16 HELIX 4 AA4 CYS A 97 LYS A 110 1 14 HELIX 5 AA5 LYS A 128 ALA A 141 1 14 HELIX 6 AA6 ASN A 153 VAL A 165 1 13 HELIX 7 AA7 ASN A 177 ARG A 194 1 18 HELIX 8 AA8 ASP A 198 ASN A 207 1 10 HELIX 9 AA9 HIS A 257 TRP A 269 1 13 HELIX 10 AB1 CYS A 287 ASN A 301 1 15 HELIX 11 AB2 ARG A 319 ASP A 330 1 12 HELIX 12 AB3 ASN A 338 VAL A 350 1 13 HELIX 13 AB4 GLY A 362 GLN A 379 1 18 HELIX 14 AB5 ASP B 13 PHE B 21 1 9 HELIX 15 AB6 HIS B 65 GLN B 79 1 15 HELIX 16 AB7 CYS B 97 LYS B 110 1 14 HELIX 17 AB8 LYS B 128 ALA B 141 1 14 HELIX 18 AB9 ASN B 153 VAL B 165 1 13 HELIX 19 AC1 ASN B 177 ARG B 194 1 18 HELIX 20 AC2 ASP B 198 ASN B 207 1 10 HELIX 21 AC3 HIS B 257 LYS B 270 1 14 HELIX 22 AC4 CYS B 287 ASN B 301 1 15 HELIX 23 AC5 ARG B 319 ASP B 330 1 12 HELIX 24 AC6 ASN B 338 VAL B 350 1 13 HELIX 25 AC7 GLY B 362 GLN B 379 1 18 SHEET 1 AA1 5 ASP A 50 LYS A 57 0 SHEET 2 AA1 5 THR A 32 LYS A 40 -1 N LEU A 35 O PHE A 54 SHEET 3 AA1 5 TYR A 86 TRP A 94 -1 O TYR A 91 N CYS A 36 SHEET 4 AA1 5 VAL A 114 ARG A 122 1 O THR A 115 N VAL A 88 SHEET 5 AA1 5 THR A 148 ILE A 151 1 O THR A 148 N ILE A 118 SHEET 1 AA2 5 THR A 231 ARG A 243 0 SHEET 2 AA2 5 TYR A 219 HIS A 228 -1 N ARG A 226 O VAL A 233 SHEET 3 AA2 5 TYR A 276 THR A 282 -1 O PHE A 281 N CYS A 221 SHEET 4 AA2 5 VAL A 304 ALA A 310 1 O PHE A 309 N THR A 282 SHEET 5 AA2 5 LYS A 333 MET A 336 1 O LYS A 333 N LEU A 306 SHEET 1 AA3 5 ASP B 50 LYS B 57 0 SHEET 2 AA3 5 THR B 32 LYS B 40 -1 N LEU B 35 O PHE B 54 SHEET 3 AA3 5 TYR B 86 TRP B 94 -1 O TYR B 91 N CYS B 36 SHEET 4 AA3 5 VAL B 114 ARG B 122 1 O PHE B 119 N TRP B 90 SHEET 5 AA3 5 THR B 148 ILE B 151 1 O THR B 148 N ILE B 118 SHEET 1 AA4 3 THR B 231 PRO B 234 0 SHEET 2 AA4 3 TYR B 219 HIS B 228 -1 N ARG B 226 O VAL B 233 SHEET 3 AA4 3 GLY B 240 ARG B 243 -1 O LEU B 242 N LEU B 220 SHEET 1 AA5 5 THR B 231 PRO B 234 0 SHEET 2 AA5 5 TYR B 219 HIS B 228 -1 N ARG B 226 O VAL B 233 SHEET 3 AA5 5 TYR B 276 THR B 282 -1 O THR B 279 N LYS B 223 SHEET 4 AA5 5 VAL B 304 ALA B 310 1 O PHE B 309 N CYS B 280 SHEET 5 AA5 5 LYS B 333 MET B 336 1 O LYS B 333 N ILE B 308 LINK ND1 HIS A 65 ZN ZN A 401 1555 1555 2.08 LINK SG CYS A 97 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 100 ZN ZN A 401 1555 1555 2.36 LINK ND1 HIS A 257 ZN ZN A 402 1555 1555 2.24 LINK SG CYS A 287 ZN ZN A 402 1555 1555 2.64 LINK SG CYS A 290 ZN ZN A 402 1555 1555 2.25 LINK ND1 HIS B 65 ZN ZN B 401 1555 1555 2.11 LINK SG CYS B 97 ZN ZN B 401 1555 1555 2.24 LINK SG CYS B 100 ZN ZN B 401 1555 1555 2.28 LINK ND1 HIS B 257 ZN ZN B 402 1555 1555 2.32 LINK SG CYS B 287 ZN ZN B 402 1555 1555 2.79 LINK SG CYS B 290 ZN ZN B 402 1555 1555 2.31 CRYST1 60.709 67.192 79.624 98.29 108.72 112.66 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016472 0.006876 0.008076 0.00000 SCALE2 0.000000 0.016127 0.005191 0.00000 SCALE3 0.000000 0.000000 0.013930 0.00000