HEADER TRANSFERASE 28-APR-22 7UUN TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE RESISTANCE ENZYME APMA, COMPLEX TITLE 2 WITH NEOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOCYCLITOL ACETYLTRANSFERASE APMA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: APMA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19BTEV KEYWDS XAT, XENOBIOTIC ACETYLTRANSFERASE, LEFT-HANDED BETA HELIX, LBH, KEYWDS 2 ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDE, STRUCTURAL GENOMICS, CSGID, KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, NIAID, KEYWDS 4 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,E.EVDOKIMOVA,R.DI LEO,J.OSIPIUK,E.BORDELEAU,G.D.WRIGHT, AUTHOR 2 A.SAVCHENKO,A.JOACHIMIAK,K.J.F.SATCHELL,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID),CENTER FOR STRUCTURAL AUTHOR 4 BIOLOGY OF INFECTIOUS DISEASES (CSBID) REVDAT 5 14-FEB-24 7UUN 1 JRNL REVDAT 4 29-NOV-23 7UUN 1 JRNL REVDAT 3 25-OCT-23 7UUN 1 REMARK REVDAT 2 25-JAN-23 7UUN 1 AUTHOR REVDAT 1 02-NOV-22 7UUN 0 JRNL AUTH E.BORDELEAU,P.J.STOGIOS,E.EVDOKIMOVA,K.KOTEVA,A.SAVCHENKO, JRNL AUTH 2 G.D.WRIGHT JRNL TITL MECHANISTIC PLASTICITY IN APMA ENABLES AMINOGLYCOSIDE JRNL TITL 2 PROMISCUITY FOR RESISTANCE. JRNL REF NAT.CHEM.BIOL. V. 20 234 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 37973888 JRNL DOI 10.1038/S41589-023-01483-3 REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 9940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8000 - 5.1400 0.99 2866 151 0.1932 0.2448 REMARK 3 2 5.1300 - 4.0800 0.97 2813 149 0.1628 0.1812 REMARK 3 3 4.0800 - 3.5700 0.96 2760 143 0.1975 0.2513 REMARK 3 4 3.5700 - 3.2400 0.98 2824 151 0.2566 0.3053 REMARK 3 5 3.2400 - 3.0100 0.73 2125 112 0.3195 0.3095 REMARK 3 6 3.0100 - 2.8300 0.52 1521 80 0.3627 0.4131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.276 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2287 REMARK 3 ANGLE : 0.885 3104 REMARK 3 CHIRALITY : 0.054 344 REMARK 3 PLANARITY : 0.006 397 REMARK 3 DIHEDRAL : 18.711 849 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3958 -12.0346 1.5326 REMARK 3 T TENSOR REMARK 3 T11: 0.4713 T22: 0.2254 REMARK 3 T33: 0.3406 T12: 0.0306 REMARK 3 T13: 0.1843 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 5.8204 L22: 3.4768 REMARK 3 L33: 4.7863 L12: -0.3038 REMARK 3 L13: -1.3926 L23: 2.1068 REMARK 3 S TENSOR REMARK 3 S11: -0.1517 S12: -0.3712 S13: -0.3597 REMARK 3 S21: 0.9197 S22: 0.1702 S23: 0.1240 REMARK 3 S31: 0.4476 S32: -0.1092 S33: 0.0120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6497 -3.3954 -1.8806 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.2403 REMARK 3 T33: 0.3567 T12: 0.0571 REMARK 3 T13: 0.1279 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 5.5995 L22: 3.6784 REMARK 3 L33: 6.0119 L12: -0.5034 REMARK 3 L13: -1.1338 L23: 1.2823 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: 0.0111 S13: 0.5594 REMARK 3 S21: 0.6009 S22: 0.1633 S23: 0.2500 REMARK 3 S31: -0.5292 S32: -0.5079 S33: -0.1636 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5283 -6.6395 17.2564 REMARK 3 T TENSOR REMARK 3 T11: 1.1114 T22: 1.0513 REMARK 3 T33: 0.6056 T12: 0.0470 REMARK 3 T13: -0.2707 T23: -0.2793 REMARK 3 L TENSOR REMARK 3 L11: 1.6798 L22: 1.4201 REMARK 3 L33: 1.0166 L12: -0.0543 REMARK 3 L13: -0.7182 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: -1.1680 S13: 0.3532 REMARK 3 S21: 1.1352 S22: 0.1510 S23: -0.3676 REMARK 3 S31: -0.1364 S32: 0.6939 S33: 0.0396 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0174 12.1061 21.0165 REMARK 3 T TENSOR REMARK 3 T11: 1.7960 T22: 1.2793 REMARK 3 T33: 1.1003 T12: -0.2777 REMARK 3 T13: -0.3203 T23: -0.7090 REMARK 3 L TENSOR REMARK 3 L11: 0.1301 L22: 0.2564 REMARK 3 L33: 0.2818 L12: -0.0345 REMARK 3 L13: -0.0716 L23: 0.0700 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.1302 S13: 0.1720 REMARK 3 S21: 0.2609 S22: -0.0227 S23: 0.0051 REMARK 3 S31: -0.2066 S32: 0.1321 S33: -0.1354 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8894 16.1375 24.8912 REMARK 3 T TENSOR REMARK 3 T11: 1.7800 T22: 1.0721 REMARK 3 T33: 1.1840 T12: 0.0816 REMARK 3 T13: 0.0926 T23: -0.5510 REMARK 3 L TENSOR REMARK 3 L11: 0.8109 L22: 3.0951 REMARK 3 L33: 1.9471 L12: 0.0059 REMARK 3 L13: -0.0893 L23: 0.7010 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -1.4762 S13: 1.5658 REMARK 3 S21: 1.1885 S22: -0.0324 S23: 0.1694 REMARK 3 S31: -1.2520 S32: -0.0955 S33: 0.1604 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10203 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 40.90 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 54.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7JM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 25% PEG3350, 10 MM NEOMYCIN, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.78200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.78200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.78200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.78200 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.78200 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.78200 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.78200 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.78200 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.78200 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.78200 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.78200 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 33.39100 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.17300 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 33.39100 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 33.39100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 100.17300 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 100.17300 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 33.39100 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 100.17300 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 33.39100 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 100.17300 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 100.17300 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 100.17300 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 33.39100 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 33.39100 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 100.17300 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 33.39100 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 33.39100 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 100.17300 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 100.17300 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 100.17300 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 33.39100 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 100.17300 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 33.39100 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 100.17300 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 33.39100 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 33.39100 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 33.39100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -1 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 -100.67 -120.45 REMARK 500 ALA A 73 -54.38 71.99 REMARK 500 ASP A 81 58.95 -159.62 REMARK 500 LYS A 164 77.62 -103.39 REMARK 500 SER A 173 15.99 54.67 REMARK 500 HIS A 188 18.59 55.16 REMARK 500 PRO A 225 -168.56 -71.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP96425 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 7UUJ RELATED DB: PDB REMARK 900 RELATED ID: 7UUK RELATED DB: PDB REMARK 900 RELATED ID: 7UUL RELATED DB: PDB REMARK 900 RELATED ID: 7UUM RELATED DB: PDB REMARK 900 RELATED ID: 7UUO RELATED DB: PDB DBREF1 7UUN A 1 274 UNP A0A1D0AST6_STAAU DBREF2 7UUN A A0A1D0AST6 1 274 SEQADV 7UUN GLN A -1 UNP A0A1D0AST EXPRESSION TAG SEQADV 7UUN GLY A 0 UNP A0A1D0AST EXPRESSION TAG SEQRES 1 A 276 GLN GLY MET LYS THR ARG LEU GLU GLN VAL LEU GLU ARG SEQRES 2 A 276 TYR LEU ASN GLY ARG GLU VAL ALA VAL TRP GLY VAL PRO SEQRES 3 A 276 THR ARG ARG LEU LEU ARG ALA LEU LYS PRO PHE LYS PHE SEQRES 4 A 276 HIS THR ALA ASP ARG VAL ASP PRO GLN TYR HIS TYR VAL SEQRES 5 A 276 VAL ALA VAL THR ASP ASP ASP LEU THR ASP PHE LEU SER SEQRES 6 A 276 ASP GLU GLN SER LYS SER PHE GLN TYR ALA ASN ASP TYR SEQRES 7 A 276 LEU THR PHE ASP ASP GLU GLY GLY GLU LEU PRO PHE GLU SEQRES 8 A 276 ARG MET CYS PHE ASN VAL PRO VAL GLY ARG GLN THR TYR SEQRES 9 A 276 PHE GLY ASP GLY VAL VAL GLY ALA CYS GLU ASN GLY TYR SEQRES 10 A 276 ILE LYS SER ILE GLY GLN PHE THR SER ILE ASN GLY THR SEQRES 11 A 276 ALA GLU ILE HIS ALA ASN HIS GLN LEU ASN MET THR PHE SEQRES 12 A 276 VAL SER ASP ASP ILE GLN ASN PHE PHE ASN GLU GLU SER SEQRES 13 A 276 MET ALA VAL PHE GLN GLU LYS LEU ARG LYS ASP PRO LYS SEQRES 14 A 276 HIS PRO TYR ALA TYR SER LYS GLU PRO MET THR ILE GLY SEQRES 15 A 276 SER ASP VAL TYR ILE GLY ALA HIS ALA PHE ILE ASN ALA SEQRES 16 A 276 SER THR VAL THR SER ILE GLY ASP GLY ALA ILE ILE GLY SEQRES 17 A 276 SER GLY ALA VAL VAL LEU GLU ASN VAL PRO PRO PHE ALA SEQRES 18 A 276 VAL VAL VAL GLY VAL PRO ALA ARG ILE LYS ARG TYR ARG SEQRES 19 A 276 PHE SER LYS GLU MET ILE GLU THR LEU LEU ARG VAL LYS SEQRES 20 A 276 TRP TRP ASP TRP SER ILE GLU GLU ILE ASN GLU ASN VAL SEQRES 21 A 276 ASP ALA LEU ILE SER PRO GLU LEU PHE MET LYS LYS TYR SEQRES 22 A 276 GLY SER LEU HET NMY A 301 42 HET EDO A 302 4 HETNAM NMY NEOMYCIN HETNAM EDO 1,2-ETHANEDIOL HETSYN NMY MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NMY C23 H46 N6 O13 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *90(H2 O) HELIX 1 AA1 THR A 3 LEU A 13 1 11 HELIX 2 AA2 THR A 25 LYS A 33 1 9 HELIX 3 AA3 THR A 54 ASP A 64 1 11 HELIX 4 AA4 GLU A 65 PHE A 70 5 6 HELIX 5 AA5 GLY A 104 GLY A 114 1 11 HELIX 6 AA6 ASP A 144 PHE A 150 5 7 HELIX 7 AA7 ASN A 151 LYS A 164 1 14 HELIX 8 AA8 HIS A 168 TYR A 172 5 5 HELIX 9 AA9 SER A 234 LYS A 245 1 12 HELIX 10 AB1 TRP A 246 TRP A 249 5 4 HELIX 11 AB2 SER A 250 ASN A 257 1 8 HELIX 12 AB3 ASN A 257 SER A 263 1 7 HELIX 13 AB4 SER A 263 GLY A 272 1 10 SHEET 1 AA1 4 PHE A 37 THR A 39 0 SHEET 2 AA1 4 GLU A 17 TRP A 21 1 N VAL A 20 O HIS A 38 SHEET 3 AA1 4 HIS A 48 ALA A 52 1 O TYR A 49 N ALA A 19 SHEET 4 AA1 4 TYR A 76 THR A 78 1 O LEU A 77 N ALA A 52 SHEET 1 AA2 2 ARG A 90 MET A 91 0 SHEET 2 AA2 2 PRO A 96 VAL A 97 -1 O VAL A 97 N ARG A 90 SHEET 1 AA3 3 ILE A 116 ILE A 119 0 SHEET 2 AA3 3 MET A 177 ILE A 179 1 O MET A 177 N LYS A 117 SHEET 3 AA3 3 SER A 198 ILE A 199 1 O ILE A 199 N THR A 178 SHEET 1 AA4 5 SER A 124 ILE A 125 0 SHEET 2 AA4 5 TYR A 184 ILE A 185 1 O ILE A 185 N SER A 124 SHEET 3 AA4 5 ILE A 204 ILE A 205 1 O ILE A 205 N TYR A 184 SHEET 4 AA4 5 ALA A 219 VAL A 222 1 O VAL A 221 N ILE A 204 SHEET 5 AA4 5 ARG A 227 TYR A 231 -1 O ARG A 230 N VAL A 220 SHEET 1 AA5 3 GLU A 130 HIS A 132 0 SHEET 2 AA5 3 PHE A 190 ASN A 192 1 O ILE A 191 N GLU A 130 SHEET 3 AA5 3 VAL A 210 VAL A 211 1 O VAL A 211 N PHE A 190 CISPEP 1 VAL A 224 PRO A 225 0 -8.19 CRYST1 133.564 133.564 133.564 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007487 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007487 0.00000