data_7UUQ # _entry.id 7UUQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UUQ pdb_00007uuq 10.2210/pdb7uuq/pdb WWPDB D_1000264962 ? ? EMDB EMD-26800 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-10 2 'Structure model' 1 1 2023-05-24 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' citation 6 3 'Structure model' pdbx_struct_assembly # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_pdbx_struct_assembly.details' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7UUQ _pdbx_database_status.recvd_initial_deposition_date 2022-04-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of self-assembling pyrene IDR' _pdbx_database_related.db_id EMD-26800 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email egelman@virginia.edu _pdbx_contact_author.name_first Edward _pdbx_contact_author.name_last Egelman _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4844-5212 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, F.' 1 0000-0003-1008-663X 'Guo, J.' 2 ? 'Xu, B.' 3 ? 'Egelman, E.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9294 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 2530 _citation.page_last 2546 _citation.title 'Hierarchical Assembly of Intrinsically Disordered Short Peptides.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chempr.2023.04.023 _citation.pdbx_database_id_PubMed 38094164 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guo, J.' 1 ? primary 'Rich-New, S.T.' 2 ? primary 'Liu, C.' 3 ? primary 'Huang, Y.' 4 ? primary 'Tan, W.' 5 ? primary 'He, H.' 6 ? primary 'Yi, M.' 7 ? primary 'Zhang, X.' 8 ? primary 'Egelman, E.H.' 9 ? primary 'Wang, F.' 10 ? primary 'Xu, B.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Pyrene-containing peptide fibril' _entity.formula_weight 1060.007 _entity.pdbx_number_of_molecules 7 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(OG9)YSPTSP(SEP)' _entity_poly.pdbx_seq_one_letter_code_can XYSPTSPS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 OG9 n 1 2 TYR n 1 3 SER n 1 4 PRO n 1 5 THR n 1 6 SER n 1 7 PRO n 1 8 SEP n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight OG9 non-polymer . '(pyren-1-yl)acetic acid' ? 'C18 H12 O2' 260.287 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 OG9 1 1 1 OG9 PYT A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 PRO 7 7 ? ? ? A . n A 1 8 SEP 8 8 ? ? ? A . n B 1 1 OG9 1 1 1 OG9 PYT B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 PRO 7 7 ? ? ? B . n B 1 8 SEP 8 8 ? ? ? B . n C 1 1 OG9 1 1 1 OG9 PYT C . n C 1 2 TYR 2 2 2 TYR TYR C . n C 1 3 SER 3 3 3 SER SER C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 THR 5 5 5 THR THR C . n C 1 6 SER 6 6 ? ? ? C . n C 1 7 PRO 7 7 ? ? ? C . n C 1 8 SEP 8 8 ? ? ? C . n D 1 1 OG9 1 1 1 OG9 PYT D . n D 1 2 TYR 2 2 2 TYR TYR D . n D 1 3 SER 3 3 3 SER SER D . n D 1 4 PRO 4 4 4 PRO PRO D . n D 1 5 THR 5 5 5 THR THR D . n D 1 6 SER 6 6 6 SER SER D . n D 1 7 PRO 7 7 ? ? ? D . n D 1 8 SEP 8 8 ? ? ? D . n E 1 1 OG9 1 1 1 OG9 PYT E . n E 1 2 TYR 2 2 2 TYR TYR E . n E 1 3 SER 3 3 3 SER SER E . n E 1 4 PRO 4 4 4 PRO PRO E . n E 1 5 THR 5 5 ? ? ? E . n E 1 6 SER 6 6 ? ? ? E . n E 1 7 PRO 7 7 ? ? ? E . n E 1 8 SEP 8 8 ? ? ? E . n F 1 1 OG9 1 1 1 OG9 PYT F . n F 1 2 TYR 2 2 2 TYR TYR F . n F 1 3 SER 3 3 3 SER SER F . n F 1 4 PRO 4 4 ? ? ? F . n F 1 5 THR 5 5 ? ? ? F . n F 1 6 SER 6 6 ? ? ? F . n F 1 7 PRO 7 7 ? ? ? F . n F 1 8 SEP 8 8 ? ? ? F . n G 1 1 OG9 1 1 1 OG9 PYT G . n G 1 2 TYR 2 2 2 TYR TYR G . n G 1 3 SER 3 3 3 SER SER G . n G 1 4 PRO 4 4 ? ? ? G . n G 1 5 THR 5 5 ? ? ? G . n G 1 6 SER 6 6 ? ? ? G . n G 1 7 PRO 7 7 ? ? ? G . n G 1 8 SEP 8 8 ? ? ? G . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UUQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7UUQ _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 5222 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.577 ? 7420 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 39.691 ? 1260 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.058 ? 420 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.011 ? 630 ? f_plane_restr ? ? # _struct.entry_id 7UUQ _struct.title 'Cryo-EM of self-assembling pyrene IDP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UUQ _struct_keywords.text 'peptides, nanofibers, self-assembly peptide filament, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7UUQ _struct_ref.pdbx_db_accession 7UUQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7UUQ A 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 2 1 7UUQ B 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 3 1 7UUQ C 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 4 1 7UUQ D 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 5 1 7UUQ E 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 6 1 7UUQ F 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 7 1 7UUQ G 1 ? 8 ? 7UUQ 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.15_b42258.' _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 -0.000000 -0.000000 0.00000 -0.000000 1.000000 -0.000000 0.00000 -0.000000 -0.000000 1.000000 0.00000 2 'helical symmetry operation' ? ? 0.791949 -0.610588 -0.000000 0.00000 0.610588 0.791949 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -33.20100 3 'helical symmetry operation' ? ? 0.845672 -0.533703 -0.000000 0.00000 0.533703 0.845672 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -28.45800 4 'helical symmetry operation' ? ? 0.891955 -0.452123 -0.000000 0.00000 0.452123 0.891955 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -23.71500 5 'helical symmetry operation' ? ? 0.930392 -0.366566 -0.000000 0.00000 0.366566 0.930392 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -18.97200 6 'helical symmetry operation' ? ? 0.960644 -0.277784 -0.000000 0.00000 0.277784 0.960644 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -14.22900 7 'helical symmetry operation' ? ? 0.982444 -0.186558 -0.000000 0.00000 0.186558 0.982444 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -9.48600 8 'helical symmetry operation' ? ? 0.995601 -0.093691 -0.000000 0.00000 0.093691 0.995601 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -4.74300 9 'helical symmetry operation' ? ? 0.995601 0.093691 -0.000000 -0.00000 -0.093691 0.995601 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 4.74300 10 'helical symmetry operation' ? ? 0.982444 0.186558 -0.000000 -0.00000 -0.186558 0.982444 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 9.48600 11 'helical symmetry operation' ? ? 0.960644 0.277784 -0.000000 -0.00000 -0.277784 0.960644 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 14.22900 12 'helical symmetry operation' ? ? 0.930392 0.366566 -0.000000 -0.00000 -0.366566 0.930392 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 18.97200 13 'helical symmetry operation' ? ? 0.891955 0.452123 -0.000000 -0.00000 -0.452123 0.891955 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 23.71500 14 'helical symmetry operation' ? ? 0.845672 0.533703 -0.000000 -0.00000 -0.533703 0.845672 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 28.45800 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A OG9 1 C ? ? ? 1_555 A TYR 2 N ? ? A OG9 1 A TYR 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? B OG9 1 C ? ? ? 1_555 B TYR 2 N ? ? B OG9 1 B TYR 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? C OG9 1 C ? ? ? 1_555 C TYR 2 N ? ? C OG9 1 C TYR 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? D OG9 1 C ? ? ? 1_555 D TYR 2 N ? ? D OG9 1 D TYR 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? E OG9 1 C ? ? ? 1_555 E TYR 2 N ? ? E OG9 1 E TYR 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? F OG9 1 C ? ? ? 1_555 F TYR 2 N ? ? F OG9 1 F TYR 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? G OG9 1 C ? ? ? 1_555 G TYR 2 N ? ? G OG9 1 G TYR 2 1_555 ? ? ? ? ? ? ? 1.317 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -157.56 68.84 2 1 SER B 3 ? ? -157.16 79.07 3 1 THR B 5 ? ? -141.69 21.42 # _pdbx_entry_details.entry_id 7UUQ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7UUQ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7UUQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 461253 _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Pyrene IDR' _em_entity_assembly.source SYNTHETIC _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7UUQ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7UUQ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7UUQ _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 7 ? A PRO 7 2 1 Y 1 A SEP 8 ? A SEP 8 3 1 Y 1 B PRO 7 ? B PRO 7 4 1 Y 1 B SEP 8 ? B SEP 8 5 1 Y 1 C SER 6 ? C SER 6 6 1 Y 1 C PRO 7 ? C PRO 7 7 1 Y 1 C SEP 8 ? C SEP 8 8 1 Y 1 D PRO 7 ? D PRO 7 9 1 Y 1 D SEP 8 ? D SEP 8 10 1 Y 1 E THR 5 ? E THR 5 11 1 Y 1 E SER 6 ? E SER 6 12 1 Y 1 E PRO 7 ? E PRO 7 13 1 Y 1 E SEP 8 ? E SEP 8 14 1 Y 1 F PRO 4 ? F PRO 4 15 1 Y 1 F THR 5 ? F THR 5 16 1 Y 1 F SER 6 ? F SER 6 17 1 Y 1 F PRO 7 ? F PRO 7 18 1 Y 1 F SEP 8 ? F SEP 8 19 1 Y 1 G PRO 4 ? G PRO 4 20 1 Y 1 G THR 5 ? G THR 5 21 1 Y 1 G SER 6 ? G SER 6 22 1 Y 1 G PRO 7 ? G PRO 7 23 1 Y 1 G SEP 8 ? G SEP 8 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal OG9 CA C N N 1 OG9 C C N N 2 OG9 O O N N 3 OG9 C05 C Y N 4 OG9 C06 C Y N 5 OG9 C07 C Y N 6 OG9 C08 C Y N 7 OG9 C09 C Y N 8 OG9 C10 C Y N 9 OG9 C11 C Y N 10 OG9 C12 C Y N 11 OG9 C13 C Y N 12 OG9 C14 C Y N 13 OG9 C15 C Y N 14 OG9 C16 C Y N 15 OG9 C17 C Y N 16 OG9 C18 C Y N 17 OG9 C19 C Y N 18 OG9 C20 C Y N 19 OG9 H1 H N N 20 OG9 H2 H N N 21 OG9 H4 H N N 22 OG9 H5 H N N 23 OG9 H6 H N N 24 OG9 H7 H N N 25 OG9 H8 H N N 26 OG9 H9 H N N 27 OG9 H10 H N N 28 OG9 H11 H N N 29 OG9 H12 H N N 30 OG9 O1 O N N 31 OG9 H3 H N N 32 PRO N N N N 33 PRO CA C N S 34 PRO C C N N 35 PRO O O N N 36 PRO CB C N N 37 PRO CG C N N 38 PRO CD C N N 39 PRO OXT O N N 40 PRO H H N N 41 PRO HA H N N 42 PRO HB2 H N N 43 PRO HB3 H N N 44 PRO HG2 H N N 45 PRO HG3 H N N 46 PRO HD2 H N N 47 PRO HD3 H N N 48 PRO HXT H N N 49 SEP N N N N 50 SEP CA C N S 51 SEP CB C N N 52 SEP OG O N N 53 SEP C C N N 54 SEP O O N N 55 SEP OXT O N N 56 SEP P P N N 57 SEP O1P O N N 58 SEP O2P O N N 59 SEP O3P O N N 60 SEP H H N N 61 SEP H2 H N N 62 SEP HA H N N 63 SEP HB2 H N N 64 SEP HB3 H N N 65 SEP HXT H N N 66 SEP HOP2 H N N 67 SEP HOP3 H N N 68 SER N N N N 69 SER CA C N S 70 SER C C N N 71 SER O O N N 72 SER CB C N N 73 SER OG O N N 74 SER OXT O N N 75 SER H H N N 76 SER H2 H N N 77 SER HA H N N 78 SER HB2 H N N 79 SER HB3 H N N 80 SER HG H N N 81 SER HXT H N N 82 THR N N N N 83 THR CA C N S 84 THR C C N N 85 THR O O N N 86 THR CB C N R 87 THR OG1 O N N 88 THR CG2 C N N 89 THR OXT O N N 90 THR H H N N 91 THR H2 H N N 92 THR HA H N N 93 THR HB H N N 94 THR HG1 H N N 95 THR HG21 H N N 96 THR HG22 H N N 97 THR HG23 H N N 98 THR HXT H N N 99 TYR N N N N 100 TYR CA C N S 101 TYR C C N N 102 TYR O O N N 103 TYR CB C N N 104 TYR CG C Y N 105 TYR CD1 C Y N 106 TYR CD2 C Y N 107 TYR CE1 C Y N 108 TYR CE2 C Y N 109 TYR CZ C Y N 110 TYR OH O N N 111 TYR OXT O N N 112 TYR H H N N 113 TYR H2 H N N 114 TYR HA H N N 115 TYR HB2 H N N 116 TYR HB3 H N N 117 TYR HD1 H N N 118 TYR HD2 H N N 119 TYR HE1 H N N 120 TYR HE2 H N N 121 TYR HH H N N 122 TYR HXT H N N 123 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OG9 CA C sing N N 1 OG9 CA C05 sing N N 2 OG9 C O doub N N 3 OG9 C19 C20 doub Y N 4 OG9 C19 C18 sing Y N 5 OG9 C05 C18 doub Y N 6 OG9 C05 C06 sing Y N 7 OG9 C20 C15 sing Y N 8 OG9 C18 C17 sing Y N 9 OG9 C06 C07 doub Y N 10 OG9 C15 C14 doub Y N 11 OG9 C15 C16 sing Y N 12 OG9 C17 C16 doub Y N 13 OG9 C17 C08 sing Y N 14 OG9 C14 C13 sing Y N 15 OG9 C07 C08 sing Y N 16 OG9 C16 C11 sing Y N 17 OG9 C08 C09 doub Y N 18 OG9 C13 C12 doub Y N 19 OG9 C11 C12 sing Y N 20 OG9 C11 C10 doub Y N 21 OG9 C09 C10 sing Y N 22 OG9 CA H1 sing N N 23 OG9 CA H2 sing N N 24 OG9 C06 H4 sing N N 25 OG9 C07 H5 sing N N 26 OG9 C09 H6 sing N N 27 OG9 C10 H7 sing N N 28 OG9 C12 H8 sing N N 29 OG9 C13 H9 sing N N 30 OG9 C14 H10 sing N N 31 OG9 C19 H11 sing N N 32 OG9 C20 H12 sing N N 33 OG9 C O1 sing N N 34 OG9 O1 H3 sing N N 35 PRO N CA sing N N 36 PRO N CD sing N N 37 PRO N H sing N N 38 PRO CA C sing N N 39 PRO CA CB sing N N 40 PRO CA HA sing N N 41 PRO C O doub N N 42 PRO C OXT sing N N 43 PRO CB CG sing N N 44 PRO CB HB2 sing N N 45 PRO CB HB3 sing N N 46 PRO CG CD sing N N 47 PRO CG HG2 sing N N 48 PRO CG HG3 sing N N 49 PRO CD HD2 sing N N 50 PRO CD HD3 sing N N 51 PRO OXT HXT sing N N 52 SEP N CA sing N N 53 SEP N H sing N N 54 SEP N H2 sing N N 55 SEP CA CB sing N N 56 SEP CA C sing N N 57 SEP CA HA sing N N 58 SEP CB OG sing N N 59 SEP CB HB2 sing N N 60 SEP CB HB3 sing N N 61 SEP OG P sing N N 62 SEP C O doub N N 63 SEP C OXT sing N N 64 SEP OXT HXT sing N N 65 SEP P O1P doub N N 66 SEP P O2P sing N N 67 SEP P O3P sing N N 68 SEP O2P HOP2 sing N N 69 SEP O3P HOP3 sing N N 70 SER N CA sing N N 71 SER N H sing N N 72 SER N H2 sing N N 73 SER CA C sing N N 74 SER CA CB sing N N 75 SER CA HA sing N N 76 SER C O doub N N 77 SER C OXT sing N N 78 SER CB OG sing N N 79 SER CB HB2 sing N N 80 SER CB HB3 sing N N 81 SER OG HG sing N N 82 SER OXT HXT sing N N 83 THR N CA sing N N 84 THR N H sing N N 85 THR N H2 sing N N 86 THR CA C sing N N 87 THR CA CB sing N N 88 THR CA HA sing N N 89 THR C O doub N N 90 THR C OXT sing N N 91 THR CB OG1 sing N N 92 THR CB CG2 sing N N 93 THR CB HB sing N N 94 THR OG1 HG1 sing N N 95 THR CG2 HG21 sing N N 96 THR CG2 HG22 sing N N 97 THR CG2 HG23 sing N N 98 THR OXT HXT sing N N 99 TYR N CA sing N N 100 TYR N H sing N N 101 TYR N H2 sing N N 102 TYR CA C sing N N 103 TYR CA CB sing N N 104 TYR CA HA sing N N 105 TYR C O doub N N 106 TYR C OXT sing N N 107 TYR CB CG sing N N 108 TYR CB HB2 sing N N 109 TYR CB HB3 sing N N 110 TYR CG CD1 doub Y N 111 TYR CG CD2 sing Y N 112 TYR CD1 CE1 sing Y N 113 TYR CD1 HD1 sing N N 114 TYR CD2 CE2 doub Y N 115 TYR CD2 HD2 sing N N 116 TYR CE1 CZ doub Y N 117 TYR CE1 HE1 sing N N 118 TYR CE2 CZ sing Y N 119 TYR CE2 HE2 sing N N 120 TYR CZ OH sing N N 121 TYR OH HH sing N N 122 TYR OXT HXT sing N N 123 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -5.38 _em_helical_entity.axial_rise_per_subunit 4.74 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM122510 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' K99GM138756 2 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 3 'National Science Foundation (NSF, United States)' 'United States' DMR-2011846 4 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id OG9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id OG9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 7UUQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_