HEADER PROTEIN FIBRIL 28-APR-22 7UUQ TITLE CRYO-EM OF SELF-ASSEMBLING PYRENE IDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRENE-CONTAINING PEPTIDE FIBRIL; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS PEPTIDES, NANOFIBERS, SELF-ASSEMBLY PEPTIDE FILAMENT, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR F.WANG,J.GUO,B.XU,E.H.EGELMAN REVDAT 3 27-DEC-23 7UUQ 1 JRNL REMARK REVDAT 2 24-MAY-23 7UUQ 1 JRNL REVDAT 1 10-MAY-23 7UUQ 0 JRNL AUTH J.GUO,S.T.RICH-NEW,C.LIU,Y.HUANG,W.TAN,H.HE,M.YI,X.ZHANG, JRNL AUTH 2 E.H.EGELMAN,F.WANG,B.XU JRNL TITL HIERARCHICAL ASSEMBLY OF INTRINSICALLY DISORDERED SHORT JRNL TITL 2 PEPTIDES. JRNL REF CHEM V. 9 2530 2023 JRNL REFN ESSN 2451-9294 JRNL PMID 38094164 JRNL DOI 10.1016/J.CHEMPR.2023.04.023 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 461253 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7UUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-22. REMARK 100 THE DEPOSITION ID IS D_1000264962. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : PYRENE IDR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 2.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.791949 -0.610588 0.000000 0.00000 REMARK 350 BIOMT2 2 0.610588 0.791949 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -33.20100 REMARK 350 BIOMT1 3 0.845672 -0.533703 0.000000 0.00000 REMARK 350 BIOMT2 3 0.533703 0.845672 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -28.45800 REMARK 350 BIOMT1 4 0.891955 -0.452123 0.000000 0.00000 REMARK 350 BIOMT2 4 0.452123 0.891955 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -23.71500 REMARK 350 BIOMT1 5 0.930392 -0.366566 0.000000 0.00000 REMARK 350 BIOMT2 5 0.366566 0.930392 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -18.97200 REMARK 350 BIOMT1 6 0.960644 -0.277784 0.000000 0.00000 REMARK 350 BIOMT2 6 0.277784 0.960644 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -14.22900 REMARK 350 BIOMT1 7 0.982444 -0.186558 0.000000 0.00000 REMARK 350 BIOMT2 7 0.186558 0.982444 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 -9.48600 REMARK 350 BIOMT1 8 0.995601 -0.093691 0.000000 0.00000 REMARK 350 BIOMT2 8 0.093691 0.995601 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 -4.74300 REMARK 350 BIOMT1 9 0.995601 0.093691 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.093691 0.995601 0.000000 0.00000 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 4.74300 REMARK 350 BIOMT1 10 0.982444 0.186558 0.000000 0.00000 REMARK 350 BIOMT2 10 -0.186558 0.982444 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 9.48600 REMARK 350 BIOMT1 11 0.960644 0.277784 0.000000 0.00000 REMARK 350 BIOMT2 11 -0.277784 0.960644 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 14.22900 REMARK 350 BIOMT1 12 0.930392 0.366566 0.000000 0.00000 REMARK 350 BIOMT2 12 -0.366566 0.930392 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 18.97200 REMARK 350 BIOMT1 13 0.891955 0.452123 0.000000 0.00000 REMARK 350 BIOMT2 13 -0.452123 0.891955 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 23.71500 REMARK 350 BIOMT1 14 0.845672 0.533703 0.000000 0.00000 REMARK 350 BIOMT2 14 -0.533703 0.845672 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 28.45800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 7 REMARK 465 SEP A 8 REMARK 465 PRO B 7 REMARK 465 SEP B 8 REMARK 465 SER C 6 REMARK 465 PRO C 7 REMARK 465 SEP C 8 REMARK 465 PRO D 7 REMARK 465 SEP D 8 REMARK 465 THR E 5 REMARK 465 SER E 6 REMARK 465 PRO E 7 REMARK 465 SEP E 8 REMARK 465 PRO F 4 REMARK 465 THR F 5 REMARK 465 SER F 6 REMARK 465 PRO F 7 REMARK 465 SEP F 8 REMARK 465 PRO G 4 REMARK 465 THR G 5 REMARK 465 SER G 6 REMARK 465 PRO G 7 REMARK 465 SEP G 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 68.84 -157.56 REMARK 500 SER B 3 79.07 -157.16 REMARK 500 THR B 5 21.42 -141.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-26800 RELATED DB: EMDB REMARK 900 CRYO-EM OF SELF-ASSEMBLING PYRENE IDR DBREF 7UUQ A 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ B 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ C 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ D 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ E 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ F 1 8 PDB 7UUQ 7UUQ 1 8 DBREF 7UUQ G 1 8 PDB 7UUQ 7UUQ 1 8 SEQRES 1 A 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 B 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 C 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 D 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 E 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 F 8 OG9 TYR SER PRO THR SER PRO SEP SEQRES 1 G 8 OG9 TYR SER PRO THR SER PRO SEP HET OG9 A 1 19 HET OG9 B 1 19 HET OG9 C 1 19 HET OG9 D 1 19 HET OG9 E 1 19 HET OG9 F 1 19 HET OG9 G 1 19 HETNAM OG9 (PYREN-1-YL)ACETIC ACID FORMUL 1 OG9 7(C18 H12 O2) LINK C OG9 A 1 N TYR A 2 1555 1555 1.33 LINK C OG9 B 1 N TYR B 2 1555 1555 1.32 LINK C OG9 C 1 N TYR C 2 1555 1555 1.33 LINK C OG9 D 1 N TYR D 2 1555 1555 1.33 LINK C OG9 E 1 N TYR E 2 1555 1555 1.33 LINK C OG9 F 1 N TYR F 2 1555 1555 1.33 LINK C OG9 G 1 N TYR G 2 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 HETATM 1 CA OG9 A 1 -6.964 -0.709 4.084 1.00 55.36 C HETATM 2 C OG9 A 1 -8.333 -0.226 4.512 1.00 55.36 C HETATM 3 O OG9 A 1 -8.966 -0.788 5.438 1.00 55.36 O HETATM 4 C05 OG9 A 1 -5.989 -1.050 5.196 1.00 55.36 C HETATM 5 C06 OG9 A 1 -6.044 -2.302 5.822 1.00 55.36 C HETATM 6 C07 OG9 A 1 -5.128 -2.613 6.829 1.00 55.36 C HETATM 7 C08 OG9 A 1 -4.143 -1.663 7.210 1.00 55.36 C HETATM 8 C09 OG9 A 1 -3.221 -1.978 8.226 1.00 55.36 C HETATM 9 C10 OG9 A 1 -2.267 -1.064 8.598 1.00 55.36 C HETATM 10 C11 OG9 A 1 -2.215 0.194 7.957 1.00 55.36 C HETATM 11 C12 OG9 A 1 -1.234 1.137 8.335 1.00 55.36 C HETATM 12 C13 OG9 A 1 -1.186 2.383 7.701 1.00 55.36 C HETATM 13 C14 OG9 A 1 -2.096 2.690 6.700 1.00 55.36 C HETATM 14 C15 OG9 A 1 -3.079 1.741 6.321 1.00 55.36 C HETATM 15 C16 OG9 A 1 -3.128 0.502 6.953 1.00 55.36 C HETATM 16 C17 OG9 A 1 -4.089 -0.422 6.580 1.00 55.36 C HETATM 17 C18 OG9 A 1 -5.009 -0.111 5.568 1.00 55.36 C HETATM 18 C19 OG9 A 1 -4.964 1.131 4.929 1.00 55.36 C HETATM 19 C20 OG9 A 1 -4.006 2.055 5.302 1.00 55.36 C