HEADER ALLERGEN 29-APR-22 7UV3 TITLE PIS V 3.0101 VICILIN LEADER SEQUENCE RESIDUES 5-52 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VICILIN PIS V 3.0101; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 7S GLOBULIN,7S SEED STORAGE PROTEIN,7S VICILIN-LIKE PROTEIN COMPND 5 PIS V 3,VICILIN PIS V 3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISTACIA VERA; SOURCE 3 ORGANISM_TAXID: 55513; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SEED STORAGE, ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.A.MUELLER,A.C.Y.FOO,E.F.DEROSE REVDAT 1 05-APR-23 7UV3 0 JRNL AUTH A.C.Y.FOO,J.B.NESBIT,S.A.Y.GIPSON,E.F.DEROSE,H.CHENG, JRNL AUTH 2 B.K.HURLBURT,M.D.KULIS,E.H.KIM,S.C.DRESKIN,S.MUSTAFA, JRNL AUTH 3 S.J.MALEKI,G.A.MUELLER JRNL TITL STRUCTURE AND IGE CROSS-REACTIVITY AMONG CASHEW, PISTACHIO, JRNL TITL 2 WALNUT, AND PEANUT VICILIN-BURIED PEPTIDES. JRNL REF J.AGRIC.FOOD CHEM. V. 71 2990 2023 JRNL REFN ESSN 1520-5118 JRNL PMID 36728846 JRNL DOI 10.1021/ACS.JAFC.2C07061 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264936. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 UM DSS, 90% H2O/10% D2O; 50 REMARK 210 UM DSS, 20 MG/ML PF1 PHAGE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 2D 1H-15N REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEWJ, X-PLOR NIH, TALOS, REMARK 210 CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 20 TYR A 20 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 20 TYR A 20 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 LYS A 2 149.35 60.43 REMARK 500 3 ARG A 42 95.05 53.95 REMARK 500 3 GLN A 44 -178.90 52.31 REMARK 500 4 LYS A 39 -173.00 61.35 REMARK 500 4 ARG A 42 92.55 68.83 REMARK 500 5 LYS A 2 55.45 33.89 REMARK 500 5 ASP A 4 -65.28 -142.01 REMARK 500 5 LYS A 39 -83.97 63.71 REMARK 500 6 LYS A 2 133.57 63.40 REMARK 500 6 THR A 3 147.90 60.51 REMARK 500 6 LYS A 40 10.20 -145.25 REMARK 500 7 ASP A 4 -56.40 -175.27 REMARK 500 8 LYS A 40 141.34 61.46 REMARK 500 9 ASP A 4 67.04 -112.80 REMARK 500 10 GLU A 43 -63.61 -157.16 REMARK 500 10 GLN A 44 -68.12 -131.77 REMARK 500 10 GLU A 45 -67.39 -133.31 REMARK 500 11 THR A 3 -92.97 -102.83 REMARK 500 11 GLU A 45 19.17 -173.27 REMARK 500 12 LYS A 39 80.45 67.06 REMARK 500 12 GLU A 43 95.25 30.22 REMARK 500 12 GLN A 44 108.83 58.89 REMARK 500 13 ASP A 4 56.23 -161.48 REMARK 500 13 GLU A 43 -77.06 -104.63 REMARK 500 14 LYS A 2 123.54 62.35 REMARK 500 15 ASP A 4 -56.65 166.34 REMARK 500 15 LYS A 39 172.91 56.48 REMARK 500 15 LYS A 40 95.77 48.60 REMARK 500 15 GLU A 45 79.06 59.80 REMARK 500 16 GLN A 17 136.23 -30.73 REMARK 500 16 GLU A 43 -35.91 -146.85 REMARK 500 16 GLN A 44 128.10 63.86 REMARK 500 17 GLN A 19 35.99 -90.98 REMARK 500 17 GLU A 43 77.41 59.49 REMARK 500 17 GLU A 45 -23.08 70.54 REMARK 500 17 GLU A 46 -12.90 171.38 REMARK 500 18 THR A 3 75.89 43.45 REMARK 500 18 ASP A 4 72.65 47.58 REMARK 500 18 GLU A 43 -71.45 1.16 REMARK 500 19 THR A 3 101.05 53.33 REMARK 500 19 ASP A 4 71.04 47.02 REMARK 500 19 GLN A 17 130.03 -36.99 REMARK 500 19 ARG A 18 -38.78 -133.70 REMARK 500 19 ARG A 42 -161.80 -59.04 REMARK 500 19 GLU A 46 -159.10 -54.12 REMARK 500 20 ASP A 4 67.93 -173.16 REMARK 500 20 LYS A 39 -139.04 51.08 REMARK 500 20 GLU A 43 67.34 -159.00 REMARK 500 20 GLU A 46 98.83 -165.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31015 RELATED DB: BMRB REMARK 900 PIS V 3.0101 VICILIN LEADER SEQUENCE RESIDUES 5-52 DBREF 7UV3 A 1 46 UNP B4X640 VCL_PISVE 26 71 SEQADV 7UV3 GLY A 1 UNP B4X640 ALA 26 ENGINEERED MUTATION SEQADV 7UV3 LEU A 47 UNP B4X640 EXPRESSION TAG SEQADV 7UV3 GLU A 48 UNP B4X640 EXPRESSION TAG SEQRES 1 A 48 GLY LYS THR ASP PRO GLU LEU LYS GLN CYS LYS HIS GLN SEQRES 2 A 48 CYS LYS VAL GLN ARG GLN TYR ASP GLU GLU GLN LYS GLU SEQRES 3 A 48 GLN CYS ALA LYS GLY CYS GLU LYS TYR TYR LYS GLU LYS SEQRES 4 A 48 LYS GLY ARG GLU GLN GLU GLU LEU GLU HELIX 1 AA1 GLU A 6 GLN A 17 1 12 HELIX 2 AA2 ASP A 21 TYR A 36 1 16 SSBOND 1 CYS A 10 CYS A 32 1555 1555 2.00 SSBOND 2 CYS A 14 CYS A 28 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1