HEADER DNA BINDING PROTEIN/DNA 29-APR-22 7UV6 TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR TITLE 2 PROTEIN REPE54 AND SCAFFOLD DUPLEX (21MER) CONTAINING THE COGNATE TITLE 3 REPE54 SEQUENCE AND AN INSERT DUPLEX (10MER) WITH GUEST TAMRA- TITLE 4 LABELLED THYMINE AND G-C RICH SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*A)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*G)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: DNA (5'-D(*GP*AP*CP*GP*GP*CP*CP*CP*GP*G)-3'); COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: DNA (5'-D(*GP*T(TAMRA)P*CP*CP*GP*GP*GP*CP*CP*G)-3'); COMPND 25 CHAIN: F; COMPND 26 ENGINEERED: YES; COMPND 27 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 MOL_ID: 5; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 23 ORGANISM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,C.D.SNOW REVDAT 4 01-MAY-24 7UV6 1 JRNL REVDAT 3 01-NOV-23 7UV6 1 JRNL REVDAT 2 25-OCT-23 7UV6 1 REMARK REVDAT 1 03-MAY-23 7UV6 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9300 - 6.3900 0.97 1298 146 0.1827 0.1610 REMARK 3 2 6.3800 - 5.0700 1.00 1258 144 0.1670 0.1994 REMARK 3 3 5.0700 - 4.4300 1.00 1258 137 0.1558 0.1762 REMARK 3 4 4.4300 - 4.0300 1.00 1257 136 0.1679 0.2116 REMARK 3 5 4.0300 - 3.7400 1.00 1227 136 0.1938 0.2453 REMARK 3 6 3.7400 - 3.5200 1.00 1249 136 0.1965 0.2674 REMARK 3 7 3.5200 - 3.3400 0.99 1225 146 0.1878 0.2368 REMARK 3 8 3.3400 - 3.2000 0.98 1209 127 0.2105 0.2407 REMARK 3 9 3.2000 - 3.0700 1.00 1229 134 0.2697 0.3068 REMARK 3 10 3.0700 - 2.9700 1.00 1202 138 0.2733 0.3277 REMARK 3 11 2.9700 - 2.8800 1.00 1248 137 0.2896 0.3854 REMARK 3 12 2.8800 - 2.7900 1.00 1229 126 0.3447 0.3771 REMARK 3 13 2.7900 - 2.7200 1.00 1231 140 0.3883 0.4695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.444 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3277 REMARK 3 ANGLE : 1.478 4693 REMARK 3 CHIRALITY : 0.084 509 REMARK 3 PLANARITY : 0.013 388 REMARK 3 DIHEDRAL : 27.725 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7900 -47.7259 -14.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.7599 T22: 0.6190 REMARK 3 T33: 1.0686 T12: 0.0189 REMARK 3 T13: 0.1189 T23: -0.3174 REMARK 3 L TENSOR REMARK 3 L11: 2.8939 L22: 0.2776 REMARK 3 L33: 2.7893 L12: -0.5951 REMARK 3 L13: -0.8034 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.4144 S13: -1.1250 REMARK 3 S21: -0.6684 S22: -0.0888 S23: 0.0595 REMARK 3 S31: 0.2110 S32: 0.0839 S33: -0.1309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3511 -48.8043 -6.3928 REMARK 3 T TENSOR REMARK 3 T11: 0.5473 T22: 0.5561 REMARK 3 T33: 1.0027 T12: 0.0341 REMARK 3 T13: 0.1026 T23: -0.1752 REMARK 3 L TENSOR REMARK 3 L11: 1.0572 L22: 2.0841 REMARK 3 L33: 4.4826 L12: -0.0762 REMARK 3 L13: 1.5448 L23: -0.5321 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -0.0218 S13: -0.8311 REMARK 3 S21: -0.3155 S22: 0.2163 S23: -0.4475 REMARK 3 S31: 0.4890 S32: 0.5335 S33: -0.3927 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1714 -38.5565 -5.1884 REMARK 3 T TENSOR REMARK 3 T11: 0.4214 T22: 0.5362 REMARK 3 T33: 0.6795 T12: -0.0709 REMARK 3 T13: 0.0856 T23: -0.1545 REMARK 3 L TENSOR REMARK 3 L11: 2.3213 L22: 2.6771 REMARK 3 L33: 2.5176 L12: -0.5420 REMARK 3 L13: 0.2218 L23: -0.9008 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: -0.1203 S13: -0.6601 REMARK 3 S21: -0.2570 S22: 0.1409 S23: 0.1573 REMARK 3 S31: 0.1657 S32: -0.4504 S33: -0.0964 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8302 -31.2372 -7.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.4215 T22: 0.6124 REMARK 3 T33: 0.6475 T12: 0.0323 REMARK 3 T13: -0.0072 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 5.0464 L22: 6.7588 REMARK 3 L33: 6.9798 L12: 0.5804 REMARK 3 L13: -0.4156 L23: 1.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.1120 S13: -0.0884 REMARK 3 S21: -0.4736 S22: 0.0164 S23: 0.8864 REMARK 3 S31: 0.1433 S32: -0.8671 S33: -0.0220 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0299 -12.8387 -4.3291 REMARK 3 T TENSOR REMARK 3 T11: 0.9550 T22: 0.7640 REMARK 3 T33: 0.8845 T12: 0.0514 REMARK 3 T13: 0.1573 T23: -0.3326 REMARK 3 L TENSOR REMARK 3 L11: 4.0375 L22: 2.9023 REMARK 3 L33: 1.0989 L12: -1.1885 REMARK 3 L13: -1.5390 L23: 0.4587 REMARK 3 S TENSOR REMARK 3 S11: -0.2268 S12: -0.7855 S13: 0.6208 REMARK 3 S21: -0.0919 S22: 0.3419 S23: -0.5962 REMARK 3 S31: -0.6318 S32: -0.0370 S33: -0.2365 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0287 -32.6239 -26.7497 REMARK 3 T TENSOR REMARK 3 T11: 1.2644 T22: 1.1680 REMARK 3 T33: 0.9272 T12: 0.0988 REMARK 3 T13: 0.4889 T23: -0.3596 REMARK 3 L TENSOR REMARK 3 L11: 1.6446 L22: 1.5483 REMARK 3 L33: 2.0114 L12: -1.1024 REMARK 3 L13: -1.0998 L23: 0.6015 REMARK 3 S TENSOR REMARK 3 S11: 0.1240 S12: 0.8458 S13: -0.1173 REMARK 3 S21: -0.8570 S22: -0.2722 S23: -0.7796 REMARK 3 S31: 0.1420 S32: 0.4277 S33: -0.2476 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3708 -38.5880 -30.3336 REMARK 3 T TENSOR REMARK 3 T11: 1.3351 T22: 1.2408 REMARK 3 T33: 1.1701 T12: 0.1730 REMARK 3 T13: 0.4993 T23: -0.4135 REMARK 3 L TENSOR REMARK 3 L11: 2.3158 L22: 2.3034 REMARK 3 L33: 1.2340 L12: -0.8810 REMARK 3 L13: -0.8167 L23: -0.6888 REMARK 3 S TENSOR REMARK 3 S11: 0.5963 S12: 0.6387 S13: 0.0871 REMARK 3 S21: -0.5501 S22: -0.2273 S23: 0.0044 REMARK 3 S31: -0.0675 S32: 0.3486 S33: -0.0764 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9800 -16.0049 -9.8099 REMARK 3 T TENSOR REMARK 3 T11: 0.8294 T22: 0.6769 REMARK 3 T33: 0.7836 T12: -0.0194 REMARK 3 T13: 0.2136 T23: -0.2613 REMARK 3 L TENSOR REMARK 3 L11: 1.9866 L22: 3.8452 REMARK 3 L33: 1.7836 L12: 0.3601 REMARK 3 L13: 1.2469 L23: -1.6965 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.1430 S13: 0.8624 REMARK 3 S21: -0.4590 S22: -0.1512 S23: -0.2768 REMARK 3 S31: -0.3963 S32: -0.0832 S33: 0.2375 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1109 -59.4790 -46.5346 REMARK 3 T TENSOR REMARK 3 T11: 1.8509 T22: 1.4505 REMARK 3 T33: 1.5027 T12: 0.5075 REMARK 3 T13: 0.2452 T23: -1.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.6803 L22: 0.5027 REMARK 3 L33: 2.4423 L12: 0.5127 REMARK 3 L13: -0.5349 L23: 0.7213 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: -0.4808 S13: 0.1618 REMARK 3 S21: 0.9379 S22: -0.0193 S23: 0.4402 REMARK 3 S31: -0.3333 S32: -0.2528 S33: 0.1655 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1014 -64.0436 -50.8395 REMARK 3 T TENSOR REMARK 3 T11: 1.8970 T22: 1.7689 REMARK 3 T33: 1.3887 T12: 0.5886 REMARK 3 T13: 0.3425 T23: -1.1461 REMARK 3 L TENSOR REMARK 3 L11: 0.1530 L22: 2.1436 REMARK 3 L33: 1.3383 L12: 0.3424 REMARK 3 L13: -0.3162 L23: 0.1443 REMARK 3 S TENSOR REMARK 3 S11: 0.2404 S12: -0.3612 S13: 0.5361 REMARK 3 S21: 0.6380 S22: 0.1318 S23: -0.0013 REMARK 3 S31: -0.5921 S32: -0.2074 S33: -0.0086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUNE 30, 2021 REMARK 200 DATA SCALING SOFTWARE : XSCALE JUNE 30, 2021, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 38.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06592 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 300 MM MGCL2, 15% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.04250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.24750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.63000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.04250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.24750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.63000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.04250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.24750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.63000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.04250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.24750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 GLY C 141 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 14 CG OD1 ND2 REMARK 470 LYS C 117 CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 229 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC E 27 O3' DC E 27 C3' -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA A 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA A 11 O3' - P - OP2 ANGL. DEV. = 6.6 DEGREES REMARK 500 DT A 12 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC A 15 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 25 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 15 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG F 18 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 12 OP1 REMARK 620 2 HOH A 204 O 87.2 REMARK 620 3 HOH A 208 O 112.4 127.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 42 OP1 REMARK 620 2 HOH E 101 O 120.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 76.5 REMARK 620 3 HOH C 401 O 62.6 59.5 REMARK 620 4 HOH C 402 O 132.0 66.5 72.5 REMARK 620 5 HOH C 406 O 79.3 121.8 62.3 94.8 REMARK 620 6 HOH C 409 O 71.1 126.3 130.2 156.7 92.9 REMARK 620 7 HOH C 412 O 120.7 73.3 130.8 77.1 158.8 87.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS THE SAME PROTEIN COMPLEXED TO A SHORTER DNA DUPLEX. REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS USED FOR MOLECULAR REPLACEMENT FOR THIS MODEL AND CONTAINS REMARK 900 THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7U7O RELATED DB: PDB REMARK 900 7U7O CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UOG RELATED DB: PDB REMARK 900 7UOG CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. REMARK 900 RELATED ID: 7UFX RELATED DB: PDB REMARK 900 7UFX CONTAINS THE SAME PROTEIN COMPLEXED TO A DNA DUPLEX WITH THE REMARK 900 SAME SEQUENCE. REMARK 900 RELATED ID: 7UR0 RELATED DB: PDB REMARK 900 7UR0 CONTAINS THE SAME PROTEIN COMPLEXED TO A DIFFERENT DNA DUPLEX. DBREF 7UV6 A 0 20 PDB 7UV6 7UV6 0 20 DBREF 7UV6 B 22 42 PDB 7UV6 7UV6 22 42 DBREF 7UV6 C 1 251 UNP P03856 REPE1_ECOLI 1 251 DBREF 7UV6 E 21 30 PDB 7UV6 7UV6 21 30 DBREF 7UV6 F 12 21 PDB 7UV6 7UV6 12 21 SEQADV 7UV6 MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7UV6 ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7UV6 GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7UV6 SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7UV6 HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7UV6 GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7UV6 SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7UV6 PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 21 DA DC DC DT DG DT DG DA DC DA DA DA DT SEQRES 2 A 21 DT DG DC DC DC DT DC DA SEQRES 1 B 21 DT DC DT DG DA DG DG DG DC DA DA DT DT SEQRES 2 B 21 DT DG DT DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY SEQRES 1 E 10 DG DA DC DG DG DC DC DC DG DG SEQRES 1 F 10 DG DT DC DC DG DG DG DC DC DG HET MG A 101 1 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 6 MG 5(MG 2+) FORMUL 11 HOH *33(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 TYR C 192 1 8 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 231 O GLN C 234 LINK OP1 DT A 12 MG MG A 101 1555 1555 2.73 LINK MG MG A 101 O HOH A 204 1555 1555 2.46 LINK MG MG A 101 O HOH A 208 1555 1555 2.77 LINK OP1 DG B 42 MG MG B 101 1555 1555 2.76 LINK OP2 DG B 42 MG MG B 102 1555 4555 2.17 LINK MG MG B 101 O HOH E 101 1555 8444 2.04 LINK MG MG B 103 O HOH C 404 1555 1555 2.46 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.13 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.47 LINK MG MG C 301 O HOH C 401 1555 1555 2.90 LINK MG MG C 301 O HOH C 402 1555 1555 2.20 LINK MG MG C 301 O HOH C 406 1555 1555 2.08 LINK MG MG C 301 O HOH C 409 1555 1555 2.66 LINK MG MG C 301 O HOH C 412 1555 1555 2.54 CRYST1 74.085 128.495 137.260 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013498 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007285 0.00000