HEADER TRANSFERASE 05-MAY-22 7UX7 TITLE CRYSTAL STRUCTURE OF MFNG, AN L- AND D-TYROSINE O-METHYLTRANSFERASE TITLE 2 FROM THE MARFORMYCIN BIOSYNTHESIS PATHWAY OF STREPTOMYCES TITLE 3 DROZDOWICZII, WITH SAH BOUND AT 1.2 A RESOLUTION (P212121 - FORM II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MFNG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES DROZDOWICZII; SOURCE 3 ORGANISM_TAXID: 202862; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B-T5-MFNG-TEV-HIS KEYWDS O-METHYLTRANSFERASE, O-METHYL-TYROSINE, MARFORMYCIN SYNTHESIS, SAM- KEYWDS 2 DEPENDENT METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.MILLER,K.-L.WU,W.XU,H.XIAO,G.N.PHILIPS JR. REVDAT 2 18-OCT-23 7UX7 1 REMARK REVDAT 1 12-OCT-22 7UX7 0 JRNL AUTH K.L.WU,J.A.MOORE,M.D.MILLER,Y.CHEN,C.LEE,W.XU,Z.PENG,Q.DUAN, JRNL AUTH 2 G.N.PHILLIPS JR.,R.A.URIBE,H.XIAO JRNL TITL EXPANDING THE EUKARYOTIC GENETIC CODE WITH A BIOSYNTHESIZED JRNL TITL 2 21ST AMINO ACID. JRNL REF PROTEIN SCI. V. 31 E4443 2022 JRNL REFN ESSN 1469-896X JRNL PMID 36173166 JRNL DOI 10.1002/PRO.4443 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.4 REMARK 3 NUMBER OF REFLECTIONS : 214231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 10679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1800 - 3.5400 1.00 8645 404 0.1455 0.1517 REMARK 3 2 3.5400 - 2.8100 1.00 8343 430 0.1335 0.1545 REMARK 3 3 2.8100 - 2.4500 1.00 8229 421 0.1192 0.1327 REMARK 3 4 2.4500 - 2.2300 0.99 8172 441 0.1045 0.1315 REMARK 3 5 2.2300 - 2.0700 0.99 8124 435 0.1010 0.1208 REMARK 3 6 2.0700 - 1.9500 0.99 8109 397 0.1023 0.1275 REMARK 3 7 1.9500 - 1.8500 0.99 8056 440 0.0995 0.1325 REMARK 3 8 1.8500 - 1.7700 0.99 8067 422 0.0968 0.1336 REMARK 3 9 1.7700 - 1.7000 0.98 7984 395 0.0927 0.1189 REMARK 3 10 1.7000 - 1.6400 0.98 7968 433 0.0922 0.1182 REMARK 3 11 1.6400 - 1.5900 0.98 7970 424 0.0918 0.1345 REMARK 3 12 1.5900 - 1.5500 0.98 7929 429 0.0885 0.1201 REMARK 3 13 1.5500 - 1.5100 0.97 7883 422 0.0944 0.1291 REMARK 3 14 1.5100 - 1.4700 0.97 7914 416 0.0968 0.1279 REMARK 3 15 1.4700 - 1.4400 0.97 7868 426 0.1044 0.1281 REMARK 3 16 1.4400 - 1.4100 0.97 7825 410 0.1069 0.1318 REMARK 3 17 1.4100 - 1.3800 0.97 7829 400 0.1107 0.1398 REMARK 3 18 1.3800 - 1.3500 0.97 7818 405 0.1186 0.1650 REMARK 3 19 1.3500 - 1.3300 0.96 7780 426 0.1236 0.1688 REMARK 3 20 1.3300 - 1.3000 0.96 7769 406 0.1290 0.1704 REMARK 3 21 1.3000 - 1.2800 0.95 7687 388 0.1365 0.1630 REMARK 3 22 1.2800 - 1.2600 0.91 7374 388 0.1530 0.1868 REMARK 3 23 1.2600 - 1.2400 0.80 6457 363 0.1671 0.1938 REMARK 3 24 1.2400 - 1.2300 0.65 5273 263 0.1726 0.1988 REMARK 3 25 1.2300 - 1.2100 0.56 4522 254 0.1828 0.1913 REMARK 3 26 1.2100 - 1.2000 0.48 3855 206 0.1978 0.2092 REMARK 3 27 1.2000 - 1.1800 0.38 3029 176 0.2013 0.1936 REMARK 3 28 1.1800 - 1.1700 0.28 2269 116 0.2122 0.2168 REMARK 3 29 1.1700 - 1.1500 0.20 1606 79 0.2219 0.2286 REMARK 3 30 1.1500 - 1.1400 0.15 1198 64 0.2234 0.2688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6505 REMARK 3 ANGLE : 1.350 8927 REMARK 3 CHIRALITY : 0.099 964 REMARK 3 PLANARITY : 0.015 1232 REMARK 3 DIHEDRAL : 13.968 2387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN INCLUDED AT REMARK 3 THEIR RIDING POSITIONS USING THE ELECTRON CLOUD DISTANCES. 2. REMARK 3 THE STRUCTURE CONTAINS AND UNKNOWN LIGAND UNL BOUND IN THE REMARK 3 ACTIVE SITE. THE COMPOUND IS A METABOLITE THAT CO-PURIFIED WITH REMARK 3 THE PROTEIN. THE STRUCTURE LOOKS SIMILAR TO NIACIN, NICOTINAMIDE, REMARK 3 BENZOATE, NITORBENZENE ETC. SINCE THE PRECIENSE SPECIES IS NOT REMARK 3 KNOW, IT WAS MODELED AS AN UNL. 3. THE C-TERMINUS OF CHAIN A REMARK 3 PACKS AGAINST CHAIN B FROM A SYMMETRY MATE IN THE UNIT CELL. REMARK 3 THIS SHIFTS THE POSITION OF SEVERAL RESIDUES IN CHAIN B TO REMARK 3 ACCOMMODATE THE C-TERMINAL TAG REGION. HOWEVER, THE INTERACTION REMARK 3 IS NOT COMPLETE. AFTER MODELING THIS MAJOR SHIFTED PORTION, REMARK 3 THERE IS RESIDUAL DIFFERENCE DENSITY FOR A CONFORMATION THAT IS REMARK 3 SIMILAR TO THE WHAT IS SEEN IN CHAIN A AND OTHER CRYSTAL FORMS. REMARK 3 OCCUPANCY REFINEMENT SUGGESTED ABOUT 60:40 SPLIT. SINCE ONLY THE REMARK 3 MAJOR PORTION OF THE CHAIN A C-TERMINUS (367-383)COULD BE REMARK 3 MODELED, THIS WAS FIXED AT 0.6 OCCUPANCY TO MATCH THE CHAIN B REMARK 3 PORTION THAT IT INTERACTS WITH, WHILE THE OTHER 0.4 OCCUPANCY REMARK 3 PORTION COULD NOT BE MODELED DUE TO DISORDER. 4. EVEN THOUGH THE REMARK 3 CRYSTALLIZATION DROPS WERE SETUP WITH S-ADENOSYLMETHIONINE (SAM/ REMARK 3 ADOMET), ELECTRON DENSITY CLEARLY SHOWS THAT THE COFACTOR HAS REMARK 3 BROKEN DOWN TO S-ADENOSYL-L-HOMOCYSTEINE (SAH/ADOHCY). 5. THE REMARK 3 DATA WERE PROCESSED WITH STARTANISO DUE TO THE ANISOTROPIC REMARK 3 RESOLUTION EXTENT. REMARK 4 REMARK 4 7UX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265104. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4, STARANISO 2.3.54 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 214260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.139 REMARK 200 RESOLUTION RANGE LOW (A) : 72.655 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 32.75 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 42.5 REMARK 200 DATA REDUNDANCY IN SHELL : 23.24 REMARK 200 R MERGE FOR SHELL (I) : 1.56810 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7UX6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8, 30% POLYETHYLENE REMARK 280 GLYCOL MONOMETHYL ETHER (PEG MME) 2000, ADDITIVE: 0.002 M S- REMARK 280 ADENOSYL METHIONINE (SAM/ADOMET), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.34700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.25200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.25200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.34700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 GLU B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 367 REMARK 465 PRO B 368 REMARK 465 SER B 369 REMARK 465 ALA B 370 REMARK 465 VAL B 371 REMARK 465 PRO B 372 REMARK 465 GLU B 373 REMARK 465 GLY B 374 REMARK 465 GLN B 375 REMARK 465 ALA B 376 REMARK 465 SER B 377 REMARK 465 GLU B 378 REMARK 465 ASN B 379 REMARK 465 LEU B 380 REMARK 465 TYR B 381 REMARK 465 PHE B 382 REMARK 465 GLN B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 6 CG OD1 ND2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 6 CG OD1 ND2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP B 292 O HOH B 501 1.36 REMARK 500 HH21 ARG A 182 O HOH A 501 1.54 REMARK 500 HH12 ARG A 135 O HOH A 506 1.54 REMARK 500 OD1 ASP A 82 HH TYR A 101 1.57 REMARK 500 HE21 GLN B 347 O HOH B 506 1.59 REMARK 500 HH22 ARG A 75 O HOH A 504 1.59 REMARK 500 N ASP B 292 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 358 CG ARG A 358 CD -0.201 REMARK 500 SER B 208 CB SER B 208 OG -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 18 -60.52 -105.54 REMARK 500 VAL A 129 -58.70 -124.77 REMARK 500 ASP A 147 -176.01 -64.60 REMARK 500 VAL B 18 13.27 -140.24 REMARK 500 ALA B 59 114.51 -160.21 REMARK 500 VAL B 129 -60.73 -124.47 REMARK 500 ASP B 192 -7.35 64.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 364 0.08 SIDE CHAIN REMARK 500 ARG B 248 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 940 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 942 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 943 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B 909 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 910 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 911 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 912 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 913 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 914 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B 915 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B 916 DISTANCE = 8.23 ANGSTROMS REMARK 525 HOH B 917 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH B 918 DISTANCE = 9.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UX6 RELATED DB: PDB REMARK 900 MFNG, AN L- AND D-TYROSINE O-METHYLTRANSFERASE FROM THE MARFORMYCIN REMARK 900 BIOSYNTHESIS PATHWAY OF STREPTOMYCES DROZDOWICZII, WITH SAH BOUND REMARK 900 AT 1.35 A RESOLUTION (P212121 - FORM I) REMARK 900 RELATED ID: 7UX8 RELATED DB: PDB REMARK 900 MFNG, AN L- AND D-TYROSINE O-METHYLTRANSFERASE FROM THE MARFORMYCIN REMARK 900 BIOSYNTHESIS PATHWAY OF STREPTOMYCES DROZDOWICZII, WITH SAH AND L- REMARK 900 TYROSINE BOUND AT 1.4 A RESOLUTION (P212121 - FORM II) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS CLONED INTO THE ECORI AND HINDIII SITES OF REMARK 999 PET22B WITH AN N-TERMINAL MET (0) ADDED AND THE NATIVE GUG-START REMARK 999 CODON BEING EXPRESSED AS V. A C-TERMINAL EXPRESSION AND 6-HIS REMARK 999 TAG ASENLYFQ/GGGHHHHHHG LEAVING A C-TERMINAL ASENLYFQ AFTER REMARK 999 REMOVAL OF THE 6-HIS TAG WITH TEV PROTEASE. DBREF1 7UX7 A 2 375 UNP A0A0D4WTP2_9ACTN DBREF2 7UX7 A A0A0D4WTP2 2 375 DBREF1 7UX7 B 2 375 UNP A0A0D4WTP2_9ACTN DBREF2 7UX7 B A0A0D4WTP2 2 375 SEQADV 7UX7 MET A 0 UNP A0A0D4WTP CLONING ARTIFACT SEQADV 7UX7 VAL A 1 UNP A0A0D4WTP CLONING ARTIFACT SEQADV 7UX7 ALA A 376 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 SER A 377 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 GLU A 378 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 ASN A 379 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 LEU A 380 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 TYR A 381 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 PHE A 382 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 GLN A 383 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 MET B 0 UNP A0A0D4WTP CLONING ARTIFACT SEQADV 7UX7 VAL B 1 UNP A0A0D4WTP CLONING ARTIFACT SEQADV 7UX7 ALA B 376 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 SER B 377 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 GLU B 378 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 ASN B 379 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 LEU B 380 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 TYR B 381 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 PHE B 382 UNP A0A0D4WTP EXPRESSION TAG SEQADV 7UX7 GLN B 383 UNP A0A0D4WTP EXPRESSION TAG SEQRES 1 A 384 MET VAL THR PRO GLU GLY ASN VAL SER LEU VAL ASP GLU SEQRES 2 A 384 SER LEU LEU VAL GLY VAL THR ASP GLU ASP ARG ALA VAL SEQRES 3 A 384 ARG SER ALA HIS GLN PHE TYR GLU ARG LEU ILE GLY LEU SEQRES 4 A 384 TRP ALA PRO ALA VAL MET GLU ALA ALA HIS GLU LEU GLY SEQRES 5 A 384 VAL PHE ALA ALA LEU ALA GLU ALA PRO ALA ASP SER GLY SEQRES 6 A 384 GLU LEU ALA ARG ARG LEU ASP CYS ASP ALA ARG ALA MET SEQRES 7 A 384 ARG VAL LEU LEU ASP ALA LEU TYR ALA TYR ASP VAL ILE SEQRES 8 A 384 ASP ARG ILE HIS ASP THR ASN GLY PHE ARG TYR LEU LEU SEQRES 9 A 384 SER ALA GLU ALA ARG GLU CYS LEU LEU PRO GLY THR LEU SEQRES 10 A 384 PHE SER LEU VAL GLY LYS PHE MET HIS ASP ILE ASN VAL SEQRES 11 A 384 ALA TRP PRO ALA TRP ARG ASN LEU ALA GLU VAL VAL ARG SEQRES 12 A 384 HIS GLY ALA ARG ASP THR SER GLY ALA GLU SER PRO ASN SEQRES 13 A 384 GLY ILE ALA GLN GLU ASP TYR GLU SER LEU VAL GLY GLY SEQRES 14 A 384 ILE ASN PHE TRP ALA PRO PRO ILE VAL THR THR LEU SER SEQRES 15 A 384 ARG LYS LEU ARG ALA SER GLY ARG SER GLY ASP ALA THR SEQRES 16 A 384 ALA SER VAL LEU ASP VAL GLY CYS GLY THR GLY LEU TYR SEQRES 17 A 384 SER GLN LEU LEU LEU ARG GLU PHE PRO ARG TRP THR ALA SEQRES 18 A 384 THR GLY LEU ASP VAL GLU ARG ILE ALA THR LEU ALA ASN SEQRES 19 A 384 ALA GLN ALA LEU ARG LEU GLY VAL GLU GLU ARG PHE ALA SEQRES 20 A 384 THR ARG ALA GLY ASP PHE TRP ARG GLY GLY TRP GLY THR SEQRES 21 A 384 GLY TYR ASP LEU VAL LEU PHE ALA ASN ILE PHE HIS LEU SEQRES 22 A 384 GLN THR PRO ALA SER ALA VAL ARG LEU MET ARG HIS ALA SEQRES 23 A 384 ALA ALA CYS LEU ALA PRO ASP GLY LEU VAL ALA VAL VAL SEQRES 24 A 384 ASP GLN ILE VAL ASP ALA ASP ARG GLU PRO LYS THR PRO SEQRES 25 A 384 GLN ASP ARG PHE ALA LEU LEU PHE ALA ALA SER MET THR SEQRES 26 A 384 ASN THR GLY GLY GLY ASP ALA TYR THR PHE GLN GLU TYR SEQRES 27 A 384 GLU GLU TRP PHE THR ALA ALA GLY LEU GLN ARG ILE GLU SEQRES 28 A 384 THR LEU ASP THR PRO MET HIS ARG ILE LEU LEU ALA ARG SEQRES 29 A 384 ARG ALA THR GLU PRO SER ALA VAL PRO GLU GLY GLN ALA SEQRES 30 A 384 SER GLU ASN LEU TYR PHE GLN SEQRES 1 B 384 MET VAL THR PRO GLU GLY ASN VAL SER LEU VAL ASP GLU SEQRES 2 B 384 SER LEU LEU VAL GLY VAL THR ASP GLU ASP ARG ALA VAL SEQRES 3 B 384 ARG SER ALA HIS GLN PHE TYR GLU ARG LEU ILE GLY LEU SEQRES 4 B 384 TRP ALA PRO ALA VAL MET GLU ALA ALA HIS GLU LEU GLY SEQRES 5 B 384 VAL PHE ALA ALA LEU ALA GLU ALA PRO ALA ASP SER GLY SEQRES 6 B 384 GLU LEU ALA ARG ARG LEU ASP CYS ASP ALA ARG ALA MET SEQRES 7 B 384 ARG VAL LEU LEU ASP ALA LEU TYR ALA TYR ASP VAL ILE SEQRES 8 B 384 ASP ARG ILE HIS ASP THR ASN GLY PHE ARG TYR LEU LEU SEQRES 9 B 384 SER ALA GLU ALA ARG GLU CYS LEU LEU PRO GLY THR LEU SEQRES 10 B 384 PHE SER LEU VAL GLY LYS PHE MET HIS ASP ILE ASN VAL SEQRES 11 B 384 ALA TRP PRO ALA TRP ARG ASN LEU ALA GLU VAL VAL ARG SEQRES 12 B 384 HIS GLY ALA ARG ASP THR SER GLY ALA GLU SER PRO ASN SEQRES 13 B 384 GLY ILE ALA GLN GLU ASP TYR GLU SER LEU VAL GLY GLY SEQRES 14 B 384 ILE ASN PHE TRP ALA PRO PRO ILE VAL THR THR LEU SER SEQRES 15 B 384 ARG LYS LEU ARG ALA SER GLY ARG SER GLY ASP ALA THR SEQRES 16 B 384 ALA SER VAL LEU ASP VAL GLY CYS GLY THR GLY LEU TYR SEQRES 17 B 384 SER GLN LEU LEU LEU ARG GLU PHE PRO ARG TRP THR ALA SEQRES 18 B 384 THR GLY LEU ASP VAL GLU ARG ILE ALA THR LEU ALA ASN SEQRES 19 B 384 ALA GLN ALA LEU ARG LEU GLY VAL GLU GLU ARG PHE ALA SEQRES 20 B 384 THR ARG ALA GLY ASP PHE TRP ARG GLY GLY TRP GLY THR SEQRES 21 B 384 GLY TYR ASP LEU VAL LEU PHE ALA ASN ILE PHE HIS LEU SEQRES 22 B 384 GLN THR PRO ALA SER ALA VAL ARG LEU MET ARG HIS ALA SEQRES 23 B 384 ALA ALA CYS LEU ALA PRO ASP GLY LEU VAL ALA VAL VAL SEQRES 24 B 384 ASP GLN ILE VAL ASP ALA ASP ARG GLU PRO LYS THR PRO SEQRES 25 B 384 GLN ASP ARG PHE ALA LEU LEU PHE ALA ALA SER MET THR SEQRES 26 B 384 ASN THR GLY GLY GLY ASP ALA TYR THR PHE GLN GLU TYR SEQRES 27 B 384 GLU GLU TRP PHE THR ALA ALA GLY LEU GLN ARG ILE GLU SEQRES 28 B 384 THR LEU ASP THR PRO MET HIS ARG ILE LEU LEU ALA ARG SEQRES 29 B 384 ARG ALA THR GLU PRO SER ALA VAL PRO GLU GLY GLN ALA SEQRES 30 B 384 SER GLU ASN LEU TYR PHE GLN HET SAH A 401 45 HET UNL A 402 9 HET UNL B 402 9 HET SAH B 401 45 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM UNL UNKNOWN LIGAND FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *861(H2 O) HELIX 1 AA1 ASP A 11 LEU A 15 5 5 HELIX 2 AA2 THR A 19 ILE A 36 1 18 HELIX 3 AA3 LEU A 38 GLY A 51 1 14 HELIX 4 AA4 GLY A 51 ALA A 59 1 9 HELIX 5 AA5 ASP A 62 ASP A 71 1 10 HELIX 6 AA6 ASP A 73 TYR A 87 1 15 HELIX 7 AA7 SER A 104 LEU A 112 1 9 HELIX 8 AA8 LEU A 119 VAL A 129 1 11 HELIX 9 AA9 VAL A 129 ASN A 136 1 8 HELIX 10 AB1 ASN A 136 GLY A 144 1 9 HELIX 11 AB2 ALA A 158 ILE A 169 1 12 HELIX 12 AB3 TRP A 172 SER A 187 1 16 HELIX 13 AB4 GLY A 205 PHE A 215 1 11 HELIX 14 AB5 VAL A 225 LEU A 239 1 15 HELIX 15 AB6 VAL A 241 GLU A 243 5 3 HELIX 16 AB7 ASP A 251 GLY A 255 5 5 HELIX 17 AB8 ILE A 269 GLN A 273 5 5 HELIX 18 AB9 THR A 274 CYS A 288 1 15 HELIX 19 AC1 THR A 310 THR A 326 1 17 HELIX 20 AC2 THR A 333 ALA A 344 1 12 HELIX 21 AC3 GLY A 374 GLN A 383 1 10 HELIX 22 AC4 ASP B 11 LEU B 15 5 5 HELIX 23 AC5 THR B 19 ILE B 36 1 18 HELIX 24 AC6 LEU B 38 GLY B 51 1 14 HELIX 25 AC7 GLY B 51 ALA B 59 1 9 HELIX 26 AC8 ASP B 62 ASP B 71 1 10 HELIX 27 AC9 ASP B 73 TYR B 87 1 15 HELIX 28 AD1 SER B 104 LEU B 112 1 9 HELIX 29 AD2 LEU B 119 VAL B 129 1 11 HELIX 30 AD3 VAL B 129 ARG B 135 1 7 HELIX 31 AD4 ASN B 136 GLY B 144 1 9 HELIX 32 AD5 ALA B 158 ILE B 169 1 12 HELIX 33 AD6 TRP B 172 SER B 187 1 16 HELIX 34 AD7 GLY B 205 PHE B 215 1 11 HELIX 35 AD8 VAL B 225 LEU B 239 1 15 HELIX 36 AD9 VAL B 241 GLU B 243 5 3 HELIX 37 AE1 ASP B 251 GLY B 255 5 5 HELIX 38 AE2 ILE B 269 GLN B 273 5 5 HELIX 39 AE3 THR B 274 CYS B 288 1 15 HELIX 40 AE4 THR B 310 THR B 326 1 17 HELIX 41 AE5 THR B 333 ALA B 344 1 12 SHEET 1 AA1 2 ASP A 91 ASP A 95 0 SHEET 2 AA1 2 GLY A 98 LEU A 102 -1 O GLY A 98 N ASP A 95 SHEET 1 AA2 7 PHE A 245 ALA A 249 0 SHEET 2 AA2 7 THR A 219 ASP A 224 1 N GLY A 222 O ALA A 246 SHEET 3 AA2 7 SER A 196 VAL A 200 1 N ASP A 199 O THR A 221 SHEET 4 AA2 7 TYR A 261 ALA A 267 1 O LEU A 265 N LEU A 198 SHEET 5 AA2 7 LEU A 289 ASP A 299 1 O ALA A 296 N VAL A 264 SHEET 6 AA2 7 ARG A 358 ARG A 364 -1 O LEU A 360 N VAL A 297 SHEET 7 AA2 7 LEU A 346 ASP A 353 -1 N ILE A 349 O LEU A 361 SHEET 1 AA3 2 ASP B 91 ASP B 95 0 SHEET 2 AA3 2 GLY B 98 LEU B 102 -1 O LEU B 102 N ASP B 91 SHEET 1 AA4 7 PHE B 245 ALA B 249 0 SHEET 2 AA4 7 THR B 219 ASP B 224 1 N GLY B 222 O ALA B 246 SHEET 3 AA4 7 SER B 196 VAL B 200 1 N ASP B 199 O THR B 221 SHEET 4 AA4 7 TYR B 261 ALA B 267 1 O LEU B 265 N LEU B 198 SHEET 5 AA4 7 LEU B 289 ASP B 299 1 O ALA B 290 N TYR B 261 SHEET 6 AA4 7 ARG B 358 ARG B 364 -1 O LEU B 360 N VAL B 297 SHEET 7 AA4 7 LEU B 346 ASP B 353 -1 N ILE B 349 O LEU B 361 CRYST1 60.694 86.334 134.504 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007435 0.00000