data_7UXU # _entry.id 7UXU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UXU pdb_00007uxu 10.2210/pdb7uxu/pdb WWPDB D_1000265135 ? ? EMDB EMD-26862 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-09-07 2 'Structure model' 1 1 2022-09-14 3 'Structure model' 1 2 2022-10-12 4 'Structure model' 1 3 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_citation.journal_volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7UXU _pdbx_database_status.recvd_initial_deposition_date 2022-05-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of the TIR domain from AbTir in complex with 3AD' _pdbx_database_related.db_id EMD-26862 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email b.kobe@uq.edu.au _pdbx_contact_author.name_first Bostjan _pdbx_contact_author.name_last Kobe _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9413-9166 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, S.' 1 ? 'Nanson, J.D.' 2 0000-0003-1306-1948 'Manik, M.K.' 3 0000-0001-9510-2250 'Gu, W.' 4 ? 'Landsberg, M.J.' 5 ? 'Ve, T.' 6 0000-0002-0113-1905 'Kobe, B.' 7 0000-0001-9413-9166 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 377 _citation.language ? _citation.page_first eadc8969 _citation.page_last eadc8969 _citation.title 'Cyclic ADP ribose isomers: Production, chemical structures, and immune signaling.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.adc8969 _citation.pdbx_database_id_PubMed 36048923 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manik, M.K.' 1 0000-0001-9510-2250 primary 'Shi, Y.' 2 0000-0003-3365-4679 primary 'Li, S.' 3 0000-0002-6116-4362 primary 'Zaydman, M.A.' 4 0000-0002-4236-1459 primary 'Damaraju, N.' 5 ? primary 'Eastman, S.' 6 0000-0003-1550-0828 primary 'Smith, T.G.' 7 0000-0003-1366-8053 primary 'Gu, W.' 8 0000-0002-1185-3557 primary 'Masic, V.' 9 ? primary 'Mosaiab, T.' 10 0000-0002-8251-0180 primary 'Weagley, J.S.' 11 0000-0001-5050-773X primary 'Hancock, S.J.' 12 ? primary 'Vasquez, E.' 13 0000-0002-5520-3070 primary 'Hartley-Tassell, L.' 14 0000-0003-2415-0321 primary 'Kargios, N.' 15 0000-0003-0856-062X primary 'Maruta, N.' 16 0000-0002-6246-6346 primary 'Lim, B.Y.J.' 17 0000-0002-0554-909X primary 'Burdett, H.' 18 0000-0003-4803-9660 primary 'Landsberg, M.J.' 19 0000-0002-2464-990X primary 'Schembri, M.A.' 20 0000-0003-4863-9260 primary 'Prokes, I.' 21 0000-0003-3896-8941 primary 'Song, L.' 22 0000-0002-5843-005X primary 'Grant, M.' 23 0000-0003-3357-0264 primary 'DiAntonio, A.' 24 0000-0002-7262-0968 primary 'Nanson, J.D.' 25 0000-0003-1306-1948 primary 'Guo, M.' 26 ? primary 'Milbrandt, J.' 27 0000-0002-5477-7689 primary 'Ve, T.' 28 0000-0002-0113-1905 primary 'Kobe, B.' 29 0000-0001-9413-9166 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Molecular chaperone Tir' 15614.538 4 ? ? ? ? 2 non-polymer syn ;[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; 686.482 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TIR domain-containing protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SNAEYDLFISHASEDKEDFVRPLAETLQQLGVNVWYDEFTLKVGDSLRQKIDSGLRNSKYGTVVLSTDFIKKDWTNYELD GLVAREMNGHKMILPIWHKITKNDVLDYSPNLADKVALNTSVNSIEEIAHQLADVIL ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAEYDLFISHASEDKEDFVRPLAETLQQLGVNVWYDEFTLKVGDSLRQKIDSGLRNSKYGTVVLSTDFIKKDWTNYELD GLVAREMNGHKMILPIWHKITKNDVLDYSPNLADKVALNTSVNSIEEIAHQLADVIL ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; _pdbx_entity_nonpoly.comp_id 1O4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLU n 1 5 TYR n 1 6 ASP n 1 7 LEU n 1 8 PHE n 1 9 ILE n 1 10 SER n 1 11 HIS n 1 12 ALA n 1 13 SER n 1 14 GLU n 1 15 ASP n 1 16 LYS n 1 17 GLU n 1 18 ASP n 1 19 PHE n 1 20 VAL n 1 21 ARG n 1 22 PRO n 1 23 LEU n 1 24 ALA n 1 25 GLU n 1 26 THR n 1 27 LEU n 1 28 GLN n 1 29 GLN n 1 30 LEU n 1 31 GLY n 1 32 VAL n 1 33 ASN n 1 34 VAL n 1 35 TRP n 1 36 TYR n 1 37 ASP n 1 38 GLU n 1 39 PHE n 1 40 THR n 1 41 LEU n 1 42 LYS n 1 43 VAL n 1 44 GLY n 1 45 ASP n 1 46 SER n 1 47 LEU n 1 48 ARG n 1 49 GLN n 1 50 LYS n 1 51 ILE n 1 52 ASP n 1 53 SER n 1 54 GLY n 1 55 LEU n 1 56 ARG n 1 57 ASN n 1 58 SER n 1 59 LYS n 1 60 TYR n 1 61 GLY n 1 62 THR n 1 63 VAL n 1 64 VAL n 1 65 LEU n 1 66 SER n 1 67 THR n 1 68 ASP n 1 69 PHE n 1 70 ILE n 1 71 LYS n 1 72 LYS n 1 73 ASP n 1 74 TRP n 1 75 THR n 1 76 ASN n 1 77 TYR n 1 78 GLU n 1 79 LEU n 1 80 ASP n 1 81 GLY n 1 82 LEU n 1 83 VAL n 1 84 ALA n 1 85 ARG n 1 86 GLU n 1 87 MET n 1 88 ASN n 1 89 GLY n 1 90 HIS n 1 91 LYS n 1 92 MET n 1 93 ILE n 1 94 LEU n 1 95 PRO n 1 96 ILE n 1 97 TRP n 1 98 HIS n 1 99 LYS n 1 100 ILE n 1 101 THR n 1 102 LYS n 1 103 ASN n 1 104 ASP n 1 105 VAL n 1 106 LEU n 1 107 ASP n 1 108 TYR n 1 109 SER n 1 110 PRO n 1 111 ASN n 1 112 LEU n 1 113 ALA n 1 114 ASP n 1 115 LYS n 1 116 VAL n 1 117 ALA n 1 118 LEU n 1 119 ASN n 1 120 THR n 1 121 SER n 1 122 VAL n 1 123 ASN n 1 124 SER n 1 125 ILE n 1 126 GLU n 1 127 GLU n 1 128 ILE n 1 129 ALA n 1 130 HIS n 1 131 GLN n 1 132 LEU n 1 133 ALA n 1 134 ASP n 1 135 VAL n 1 136 ILE n 1 137 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 137 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APD31_10100, H0529_09530' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acinetobacter baumannii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 470 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1O4 non-polymer . ;[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate ; ? 'C24 H30 N7 O13 P2 1' 686.482 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 131 ? ? ? A . n A 1 2 ASN 2 132 ? ? ? A . n A 1 3 ALA 3 133 ? ? ? A . n A 1 4 GLU 4 134 134 GLU GLU A . n A 1 5 TYR 5 135 135 TYR TYR A . n A 1 6 ASP 6 136 136 ASP ASP A . n A 1 7 LEU 7 137 137 LEU LEU A . n A 1 8 PHE 8 138 138 PHE PHE A . n A 1 9 ILE 9 139 139 ILE ILE A . n A 1 10 SER 10 140 140 SER SER A . n A 1 11 HIS 11 141 141 HIS HIS A . n A 1 12 ALA 12 142 142 ALA ALA A . n A 1 13 SER 13 143 143 SER SER A . n A 1 14 GLU 14 144 144 GLU GLU A . n A 1 15 ASP 15 145 145 ASP ASP A . n A 1 16 LYS 16 146 146 LYS LYS A . n A 1 17 GLU 17 147 147 GLU GLU A . n A 1 18 ASP 18 148 148 ASP ASP A . n A 1 19 PHE 19 149 149 PHE PHE A . n A 1 20 VAL 20 150 150 VAL VAL A . n A 1 21 ARG 21 151 151 ARG ARG A . n A 1 22 PRO 22 152 152 PRO PRO A . n A 1 23 LEU 23 153 153 LEU LEU A . n A 1 24 ALA 24 154 154 ALA ALA A . n A 1 25 GLU 25 155 155 GLU GLU A . n A 1 26 THR 26 156 156 THR THR A . n A 1 27 LEU 27 157 157 LEU LEU A . n A 1 28 GLN 28 158 158 GLN GLN A . n A 1 29 GLN 29 159 159 GLN GLN A . n A 1 30 LEU 30 160 160 LEU LEU A . n A 1 31 GLY 31 161 161 GLY GLY A . n A 1 32 VAL 32 162 162 VAL VAL A . n A 1 33 ASN 33 163 163 ASN ASN A . n A 1 34 VAL 34 164 164 VAL VAL A . n A 1 35 TRP 35 165 165 TRP TRP A . n A 1 36 TYR 36 166 166 TYR TYR A . n A 1 37 ASP 37 167 167 ASP ASP A . n A 1 38 GLU 38 168 168 GLU GLU A . n A 1 39 PHE 39 169 169 PHE PHE A . n A 1 40 THR 40 170 170 THR THR A . n A 1 41 LEU 41 171 171 LEU LEU A . n A 1 42 LYS 42 172 172 LYS LYS A . n A 1 43 VAL 43 173 173 VAL VAL A . n A 1 44 GLY 44 174 174 GLY GLY A . n A 1 45 ASP 45 175 175 ASP ASP A . n A 1 46 SER 46 176 176 SER SER A . n A 1 47 LEU 47 177 177 LEU LEU A . n A 1 48 ARG 48 178 178 ARG ARG A . n A 1 49 GLN 49 179 179 GLN GLN A . n A 1 50 LYS 50 180 180 LYS LYS A . n A 1 51 ILE 51 181 181 ILE ILE A . n A 1 52 ASP 52 182 182 ASP ASP A . n A 1 53 SER 53 183 183 SER SER A . n A 1 54 GLY 54 184 184 GLY GLY A . n A 1 55 LEU 55 185 185 LEU LEU A . n A 1 56 ARG 56 186 186 ARG ARG A . n A 1 57 ASN 57 187 187 ASN ASN A . n A 1 58 SER 58 188 188 SER SER A . n A 1 59 LYS 59 189 189 LYS LYS A . n A 1 60 TYR 60 190 190 TYR TYR A . n A 1 61 GLY 61 191 191 GLY GLY A . n A 1 62 THR 62 192 192 THR THR A . n A 1 63 VAL 63 193 193 VAL VAL A . n A 1 64 VAL 64 194 194 VAL VAL A . n A 1 65 LEU 65 195 195 LEU LEU A . n A 1 66 SER 66 196 196 SER SER A . n A 1 67 THR 67 197 197 THR THR A . n A 1 68 ASP 68 198 198 ASP ASP A . n A 1 69 PHE 69 199 199 PHE PHE A . n A 1 70 ILE 70 200 200 ILE ILE A . n A 1 71 LYS 71 201 201 LYS LYS A . n A 1 72 LYS 72 202 202 LYS LYS A . n A 1 73 ASP 73 203 203 ASP ASP A . n A 1 74 TRP 74 204 204 TRP TRP A . n A 1 75 THR 75 205 205 THR THR A . n A 1 76 ASN 76 206 206 ASN ASN A . n A 1 77 TYR 77 207 207 TYR TYR A . n A 1 78 GLU 78 208 208 GLU GLU A . n A 1 79 LEU 79 209 209 LEU LEU A . n A 1 80 ASP 80 210 210 ASP ASP A . n A 1 81 GLY 81 211 211 GLY GLY A . n A 1 82 LEU 82 212 212 LEU LEU A . n A 1 83 VAL 83 213 213 VAL VAL A . n A 1 84 ALA 84 214 214 ALA ALA A . n A 1 85 ARG 85 215 215 ARG ARG A . n A 1 86 GLU 86 216 216 GLU GLU A . n A 1 87 MET 87 217 217 MET MET A . n A 1 88 ASN 88 218 218 ASN ASN A . n A 1 89 GLY 89 219 219 GLY GLY A . n A 1 90 HIS 90 220 220 HIS HIS A . n A 1 91 LYS 91 221 221 LYS LYS A . n A 1 92 MET 92 222 222 MET MET A . n A 1 93 ILE 93 223 223 ILE ILE A . n A 1 94 LEU 94 224 224 LEU LEU A . n A 1 95 PRO 95 225 225 PRO PRO A . n A 1 96 ILE 96 226 226 ILE ILE A . n A 1 97 TRP 97 227 227 TRP TRP A . n A 1 98 HIS 98 228 228 HIS HIS A . n A 1 99 LYS 99 229 229 LYS LYS A . n A 1 100 ILE 100 230 230 ILE ILE A . n A 1 101 THR 101 231 231 THR THR A . n A 1 102 LYS 102 232 232 LYS LYS A . n A 1 103 ASN 103 233 233 ASN ASN A . n A 1 104 ASP 104 234 234 ASP ASP A . n A 1 105 VAL 105 235 235 VAL VAL A . n A 1 106 LEU 106 236 236 LEU LEU A . n A 1 107 ASP 107 237 237 ASP ASP A . n A 1 108 TYR 108 238 238 TYR TYR A . n A 1 109 SER 109 239 239 SER SER A . n A 1 110 PRO 110 240 240 PRO PRO A . n A 1 111 ASN 111 241 241 ASN ASN A . n A 1 112 LEU 112 242 242 LEU LEU A . n A 1 113 ALA 113 243 243 ALA ALA A . n A 1 114 ASP 114 244 244 ASP ASP A . n A 1 115 LYS 115 245 245 LYS LYS A . n A 1 116 VAL 116 246 246 VAL VAL A . n A 1 117 ALA 117 247 247 ALA ALA A . n A 1 118 LEU 118 248 248 LEU LEU A . n A 1 119 ASN 119 249 249 ASN ASN A . n A 1 120 THR 120 250 250 THR THR A . n A 1 121 SER 121 251 251 SER SER A . n A 1 122 VAL 122 252 252 VAL VAL A . n A 1 123 ASN 123 253 253 ASN ASN A . n A 1 124 SER 124 254 254 SER SER A . n A 1 125 ILE 125 255 255 ILE ILE A . n A 1 126 GLU 126 256 256 GLU GLU A . n A 1 127 GLU 127 257 257 GLU GLU A . n A 1 128 ILE 128 258 258 ILE ILE A . n A 1 129 ALA 129 259 259 ALA ALA A . n A 1 130 HIS 130 260 260 HIS HIS A . n A 1 131 GLN 131 261 261 GLN GLN A . n A 1 132 LEU 132 262 262 LEU LEU A . n A 1 133 ALA 133 263 263 ALA ALA A . n A 1 134 ASP 134 264 264 ASP ASP A . n A 1 135 VAL 135 265 265 VAL VAL A . n A 1 136 ILE 136 266 266 ILE ILE A . n A 1 137 LEU 137 267 267 LEU LEU A . n B 1 1 SER 1 131 ? ? ? B . n B 1 2 ASN 2 132 ? ? ? B . n B 1 3 ALA 3 133 ? ? ? B . n B 1 4 GLU 4 134 134 GLU GLU B . n B 1 5 TYR 5 135 135 TYR TYR B . n B 1 6 ASP 6 136 136 ASP ASP B . n B 1 7 LEU 7 137 137 LEU LEU B . n B 1 8 PHE 8 138 138 PHE PHE B . n B 1 9 ILE 9 139 139 ILE ILE B . n B 1 10 SER 10 140 140 SER SER B . n B 1 11 HIS 11 141 141 HIS HIS B . n B 1 12 ALA 12 142 142 ALA ALA B . n B 1 13 SER 13 143 143 SER SER B . n B 1 14 GLU 14 144 144 GLU GLU B . n B 1 15 ASP 15 145 145 ASP ASP B . n B 1 16 LYS 16 146 146 LYS LYS B . n B 1 17 GLU 17 147 147 GLU GLU B . n B 1 18 ASP 18 148 148 ASP ASP B . n B 1 19 PHE 19 149 149 PHE PHE B . n B 1 20 VAL 20 150 150 VAL VAL B . n B 1 21 ARG 21 151 151 ARG ARG B . n B 1 22 PRO 22 152 152 PRO PRO B . n B 1 23 LEU 23 153 153 LEU LEU B . n B 1 24 ALA 24 154 154 ALA ALA B . n B 1 25 GLU 25 155 155 GLU GLU B . n B 1 26 THR 26 156 156 THR THR B . n B 1 27 LEU 27 157 157 LEU LEU B . n B 1 28 GLN 28 158 158 GLN GLN B . n B 1 29 GLN 29 159 159 GLN GLN B . n B 1 30 LEU 30 160 160 LEU LEU B . n B 1 31 GLY 31 161 161 GLY GLY B . n B 1 32 VAL 32 162 162 VAL VAL B . n B 1 33 ASN 33 163 163 ASN ASN B . n B 1 34 VAL 34 164 164 VAL VAL B . n B 1 35 TRP 35 165 165 TRP TRP B . n B 1 36 TYR 36 166 166 TYR TYR B . n B 1 37 ASP 37 167 167 ASP ASP B . n B 1 38 GLU 38 168 168 GLU GLU B . n B 1 39 PHE 39 169 169 PHE PHE B . n B 1 40 THR 40 170 170 THR THR B . n B 1 41 LEU 41 171 171 LEU LEU B . n B 1 42 LYS 42 172 172 LYS LYS B . n B 1 43 VAL 43 173 173 VAL VAL B . n B 1 44 GLY 44 174 174 GLY GLY B . n B 1 45 ASP 45 175 175 ASP ASP B . n B 1 46 SER 46 176 176 SER SER B . n B 1 47 LEU 47 177 177 LEU LEU B . n B 1 48 ARG 48 178 178 ARG ARG B . n B 1 49 GLN 49 179 179 GLN GLN B . n B 1 50 LYS 50 180 180 LYS LYS B . n B 1 51 ILE 51 181 181 ILE ILE B . n B 1 52 ASP 52 182 182 ASP ASP B . n B 1 53 SER 53 183 183 SER SER B . n B 1 54 GLY 54 184 184 GLY GLY B . n B 1 55 LEU 55 185 185 LEU LEU B . n B 1 56 ARG 56 186 186 ARG ARG B . n B 1 57 ASN 57 187 187 ASN ASN B . n B 1 58 SER 58 188 188 SER SER B . n B 1 59 LYS 59 189 189 LYS LYS B . n B 1 60 TYR 60 190 190 TYR TYR B . n B 1 61 GLY 61 191 191 GLY GLY B . n B 1 62 THR 62 192 192 THR THR B . n B 1 63 VAL 63 193 193 VAL VAL B . n B 1 64 VAL 64 194 194 VAL VAL B . n B 1 65 LEU 65 195 195 LEU LEU B . n B 1 66 SER 66 196 196 SER SER B . n B 1 67 THR 67 197 197 THR THR B . n B 1 68 ASP 68 198 198 ASP ASP B . n B 1 69 PHE 69 199 199 PHE PHE B . n B 1 70 ILE 70 200 200 ILE ILE B . n B 1 71 LYS 71 201 201 LYS LYS B . n B 1 72 LYS 72 202 202 LYS LYS B . n B 1 73 ASP 73 203 203 ASP ASP B . n B 1 74 TRP 74 204 204 TRP TRP B . n B 1 75 THR 75 205 205 THR THR B . n B 1 76 ASN 76 206 206 ASN ASN B . n B 1 77 TYR 77 207 207 TYR TYR B . n B 1 78 GLU 78 208 208 GLU GLU B . n B 1 79 LEU 79 209 209 LEU LEU B . n B 1 80 ASP 80 210 210 ASP ASP B . n B 1 81 GLY 81 211 211 GLY GLY B . n B 1 82 LEU 82 212 212 LEU LEU B . n B 1 83 VAL 83 213 213 VAL VAL B . n B 1 84 ALA 84 214 214 ALA ALA B . n B 1 85 ARG 85 215 215 ARG ARG B . n B 1 86 GLU 86 216 216 GLU GLU B . n B 1 87 MET 87 217 217 MET MET B . n B 1 88 ASN 88 218 218 ASN ASN B . n B 1 89 GLY 89 219 219 GLY GLY B . n B 1 90 HIS 90 220 220 HIS HIS B . n B 1 91 LYS 91 221 221 LYS LYS B . n B 1 92 MET 92 222 222 MET MET B . n B 1 93 ILE 93 223 223 ILE ILE B . n B 1 94 LEU 94 224 224 LEU LEU B . n B 1 95 PRO 95 225 225 PRO PRO B . n B 1 96 ILE 96 226 226 ILE ILE B . n B 1 97 TRP 97 227 227 TRP TRP B . n B 1 98 HIS 98 228 228 HIS HIS B . n B 1 99 LYS 99 229 229 LYS LYS B . n B 1 100 ILE 100 230 230 ILE ILE B . n B 1 101 THR 101 231 231 THR THR B . n B 1 102 LYS 102 232 232 LYS LYS B . n B 1 103 ASN 103 233 233 ASN ASN B . n B 1 104 ASP 104 234 234 ASP ASP B . n B 1 105 VAL 105 235 235 VAL VAL B . n B 1 106 LEU 106 236 236 LEU LEU B . n B 1 107 ASP 107 237 237 ASP ASP B . n B 1 108 TYR 108 238 238 TYR TYR B . n B 1 109 SER 109 239 239 SER SER B . n B 1 110 PRO 110 240 240 PRO PRO B . n B 1 111 ASN 111 241 241 ASN ASN B . n B 1 112 LEU 112 242 242 LEU LEU B . n B 1 113 ALA 113 243 243 ALA ALA B . n B 1 114 ASP 114 244 244 ASP ASP B . n B 1 115 LYS 115 245 245 LYS LYS B . n B 1 116 VAL 116 246 246 VAL VAL B . n B 1 117 ALA 117 247 247 ALA ALA B . n B 1 118 LEU 118 248 248 LEU LEU B . n B 1 119 ASN 119 249 249 ASN ASN B . n B 1 120 THR 120 250 250 THR THR B . n B 1 121 SER 121 251 251 SER SER B . n B 1 122 VAL 122 252 252 VAL VAL B . n B 1 123 ASN 123 253 253 ASN ASN B . n B 1 124 SER 124 254 254 SER SER B . n B 1 125 ILE 125 255 255 ILE ILE B . n B 1 126 GLU 126 256 256 GLU GLU B . n B 1 127 GLU 127 257 257 GLU GLU B . n B 1 128 ILE 128 258 258 ILE ILE B . n B 1 129 ALA 129 259 259 ALA ALA B . n B 1 130 HIS 130 260 260 HIS HIS B . n B 1 131 GLN 131 261 261 GLN GLN B . n B 1 132 LEU 132 262 262 LEU LEU B . n B 1 133 ALA 133 263 263 ALA ALA B . n B 1 134 ASP 134 264 264 ASP ASP B . n B 1 135 VAL 135 265 265 VAL VAL B . n B 1 136 ILE 136 266 266 ILE ILE B . n B 1 137 LEU 137 267 267 LEU LEU B . n C 1 1 SER 1 131 ? ? ? C . n C 1 2 ASN 2 132 ? ? ? C . n C 1 3 ALA 3 133 ? ? ? C . n C 1 4 GLU 4 134 134 GLU GLU C . n C 1 5 TYR 5 135 135 TYR TYR C . n C 1 6 ASP 6 136 136 ASP ASP C . n C 1 7 LEU 7 137 137 LEU LEU C . n C 1 8 PHE 8 138 138 PHE PHE C . n C 1 9 ILE 9 139 139 ILE ILE C . n C 1 10 SER 10 140 140 SER SER C . n C 1 11 HIS 11 141 141 HIS HIS C . n C 1 12 ALA 12 142 142 ALA ALA C . n C 1 13 SER 13 143 143 SER SER C . n C 1 14 GLU 14 144 144 GLU GLU C . n C 1 15 ASP 15 145 145 ASP ASP C . n C 1 16 LYS 16 146 146 LYS LYS C . n C 1 17 GLU 17 147 147 GLU GLU C . n C 1 18 ASP 18 148 148 ASP ASP C . n C 1 19 PHE 19 149 149 PHE PHE C . n C 1 20 VAL 20 150 150 VAL VAL C . n C 1 21 ARG 21 151 151 ARG ARG C . n C 1 22 PRO 22 152 152 PRO PRO C . n C 1 23 LEU 23 153 153 LEU LEU C . n C 1 24 ALA 24 154 154 ALA ALA C . n C 1 25 GLU 25 155 155 GLU GLU C . n C 1 26 THR 26 156 156 THR THR C . n C 1 27 LEU 27 157 157 LEU LEU C . n C 1 28 GLN 28 158 158 GLN GLN C . n C 1 29 GLN 29 159 159 GLN GLN C . n C 1 30 LEU 30 160 160 LEU LEU C . n C 1 31 GLY 31 161 161 GLY GLY C . n C 1 32 VAL 32 162 162 VAL VAL C . n C 1 33 ASN 33 163 163 ASN ASN C . n C 1 34 VAL 34 164 164 VAL VAL C . n C 1 35 TRP 35 165 165 TRP TRP C . n C 1 36 TYR 36 166 166 TYR TYR C . n C 1 37 ASP 37 167 167 ASP ASP C . n C 1 38 GLU 38 168 168 GLU GLU C . n C 1 39 PHE 39 169 169 PHE PHE C . n C 1 40 THR 40 170 170 THR THR C . n C 1 41 LEU 41 171 171 LEU LEU C . n C 1 42 LYS 42 172 172 LYS LYS C . n C 1 43 VAL 43 173 173 VAL VAL C . n C 1 44 GLY 44 174 174 GLY GLY C . n C 1 45 ASP 45 175 175 ASP ASP C . n C 1 46 SER 46 176 176 SER SER C . n C 1 47 LEU 47 177 177 LEU LEU C . n C 1 48 ARG 48 178 178 ARG ARG C . n C 1 49 GLN 49 179 179 GLN GLN C . n C 1 50 LYS 50 180 180 LYS LYS C . n C 1 51 ILE 51 181 181 ILE ILE C . n C 1 52 ASP 52 182 182 ASP ASP C . n C 1 53 SER 53 183 183 SER SER C . n C 1 54 GLY 54 184 184 GLY GLY C . n C 1 55 LEU 55 185 185 LEU LEU C . n C 1 56 ARG 56 186 186 ARG ARG C . n C 1 57 ASN 57 187 187 ASN ASN C . n C 1 58 SER 58 188 188 SER SER C . n C 1 59 LYS 59 189 189 LYS LYS C . n C 1 60 TYR 60 190 190 TYR TYR C . n C 1 61 GLY 61 191 191 GLY GLY C . n C 1 62 THR 62 192 192 THR THR C . n C 1 63 VAL 63 193 193 VAL VAL C . n C 1 64 VAL 64 194 194 VAL VAL C . n C 1 65 LEU 65 195 195 LEU LEU C . n C 1 66 SER 66 196 196 SER SER C . n C 1 67 THR 67 197 197 THR THR C . n C 1 68 ASP 68 198 198 ASP ASP C . n C 1 69 PHE 69 199 199 PHE PHE C . n C 1 70 ILE 70 200 200 ILE ILE C . n C 1 71 LYS 71 201 201 LYS LYS C . n C 1 72 LYS 72 202 202 LYS LYS C . n C 1 73 ASP 73 203 203 ASP ASP C . n C 1 74 TRP 74 204 204 TRP TRP C . n C 1 75 THR 75 205 205 THR THR C . n C 1 76 ASN 76 206 206 ASN ASN C . n C 1 77 TYR 77 207 207 TYR TYR C . n C 1 78 GLU 78 208 208 GLU GLU C . n C 1 79 LEU 79 209 209 LEU LEU C . n C 1 80 ASP 80 210 210 ASP ASP C . n C 1 81 GLY 81 211 211 GLY GLY C . n C 1 82 LEU 82 212 212 LEU LEU C . n C 1 83 VAL 83 213 213 VAL VAL C . n C 1 84 ALA 84 214 214 ALA ALA C . n C 1 85 ARG 85 215 215 ARG ARG C . n C 1 86 GLU 86 216 216 GLU GLU C . n C 1 87 MET 87 217 217 MET MET C . n C 1 88 ASN 88 218 218 ASN ASN C . n C 1 89 GLY 89 219 219 GLY GLY C . n C 1 90 HIS 90 220 220 HIS HIS C . n C 1 91 LYS 91 221 221 LYS LYS C . n C 1 92 MET 92 222 222 MET MET C . n C 1 93 ILE 93 223 223 ILE ILE C . n C 1 94 LEU 94 224 224 LEU LEU C . n C 1 95 PRO 95 225 225 PRO PRO C . n C 1 96 ILE 96 226 226 ILE ILE C . n C 1 97 TRP 97 227 227 TRP TRP C . n C 1 98 HIS 98 228 228 HIS HIS C . n C 1 99 LYS 99 229 229 LYS LYS C . n C 1 100 ILE 100 230 230 ILE ILE C . n C 1 101 THR 101 231 231 THR THR C . n C 1 102 LYS 102 232 232 LYS LYS C . n C 1 103 ASN 103 233 233 ASN ASN C . n C 1 104 ASP 104 234 234 ASP ASP C . n C 1 105 VAL 105 235 235 VAL VAL C . n C 1 106 LEU 106 236 236 LEU LEU C . n C 1 107 ASP 107 237 237 ASP ASP C . n C 1 108 TYR 108 238 238 TYR TYR C . n C 1 109 SER 109 239 239 SER SER C . n C 1 110 PRO 110 240 240 PRO PRO C . n C 1 111 ASN 111 241 241 ASN ASN C . n C 1 112 LEU 112 242 242 LEU LEU C . n C 1 113 ALA 113 243 243 ALA ALA C . n C 1 114 ASP 114 244 244 ASP ASP C . n C 1 115 LYS 115 245 245 LYS LYS C . n C 1 116 VAL 116 246 246 VAL VAL C . n C 1 117 ALA 117 247 247 ALA ALA C . n C 1 118 LEU 118 248 248 LEU LEU C . n C 1 119 ASN 119 249 249 ASN ASN C . n C 1 120 THR 120 250 250 THR THR C . n C 1 121 SER 121 251 251 SER SER C . n C 1 122 VAL 122 252 252 VAL VAL C . n C 1 123 ASN 123 253 253 ASN ASN C . n C 1 124 SER 124 254 254 SER SER C . n C 1 125 ILE 125 255 255 ILE ILE C . n C 1 126 GLU 126 256 256 GLU GLU C . n C 1 127 GLU 127 257 257 GLU GLU C . n C 1 128 ILE 128 258 258 ILE ILE C . n C 1 129 ALA 129 259 259 ALA ALA C . n C 1 130 HIS 130 260 260 HIS HIS C . n C 1 131 GLN 131 261 261 GLN GLN C . n C 1 132 LEU 132 262 262 LEU LEU C . n C 1 133 ALA 133 263 263 ALA ALA C . n C 1 134 ASP 134 264 264 ASP ASP C . n C 1 135 VAL 135 265 265 VAL VAL C . n C 1 136 ILE 136 266 266 ILE ILE C . n C 1 137 LEU 137 267 267 LEU LEU C . n D 1 1 SER 1 131 ? ? ? D . n D 1 2 ASN 2 132 ? ? ? D . n D 1 3 ALA 3 133 ? ? ? D . n D 1 4 GLU 4 134 134 GLU GLU D . n D 1 5 TYR 5 135 135 TYR TYR D . n D 1 6 ASP 6 136 136 ASP ASP D . n D 1 7 LEU 7 137 137 LEU LEU D . n D 1 8 PHE 8 138 138 PHE PHE D . n D 1 9 ILE 9 139 139 ILE ILE D . n D 1 10 SER 10 140 140 SER SER D . n D 1 11 HIS 11 141 141 HIS HIS D . n D 1 12 ALA 12 142 142 ALA ALA D . n D 1 13 SER 13 143 143 SER SER D . n D 1 14 GLU 14 144 144 GLU GLU D . n D 1 15 ASP 15 145 145 ASP ASP D . n D 1 16 LYS 16 146 146 LYS LYS D . n D 1 17 GLU 17 147 147 GLU GLU D . n D 1 18 ASP 18 148 148 ASP ASP D . n D 1 19 PHE 19 149 149 PHE PHE D . n D 1 20 VAL 20 150 150 VAL VAL D . n D 1 21 ARG 21 151 151 ARG ARG D . n D 1 22 PRO 22 152 152 PRO PRO D . n D 1 23 LEU 23 153 153 LEU LEU D . n D 1 24 ALA 24 154 154 ALA ALA D . n D 1 25 GLU 25 155 155 GLU GLU D . n D 1 26 THR 26 156 156 THR THR D . n D 1 27 LEU 27 157 157 LEU LEU D . n D 1 28 GLN 28 158 158 GLN GLN D . n D 1 29 GLN 29 159 159 GLN GLN D . n D 1 30 LEU 30 160 160 LEU LEU D . n D 1 31 GLY 31 161 161 GLY GLY D . n D 1 32 VAL 32 162 162 VAL VAL D . n D 1 33 ASN 33 163 163 ASN ASN D . n D 1 34 VAL 34 164 164 VAL VAL D . n D 1 35 TRP 35 165 165 TRP TRP D . n D 1 36 TYR 36 166 166 TYR TYR D . n D 1 37 ASP 37 167 167 ASP ASP D . n D 1 38 GLU 38 168 168 GLU GLU D . n D 1 39 PHE 39 169 169 PHE PHE D . n D 1 40 THR 40 170 170 THR THR D . n D 1 41 LEU 41 171 171 LEU LEU D . n D 1 42 LYS 42 172 172 LYS LYS D . n D 1 43 VAL 43 173 173 VAL VAL D . n D 1 44 GLY 44 174 174 GLY GLY D . n D 1 45 ASP 45 175 175 ASP ASP D . n D 1 46 SER 46 176 176 SER SER D . n D 1 47 LEU 47 177 177 LEU LEU D . n D 1 48 ARG 48 178 178 ARG ARG D . n D 1 49 GLN 49 179 179 GLN GLN D . n D 1 50 LYS 50 180 180 LYS LYS D . n D 1 51 ILE 51 181 181 ILE ILE D . n D 1 52 ASP 52 182 182 ASP ASP D . n D 1 53 SER 53 183 183 SER SER D . n D 1 54 GLY 54 184 184 GLY GLY D . n D 1 55 LEU 55 185 185 LEU LEU D . n D 1 56 ARG 56 186 186 ARG ARG D . n D 1 57 ASN 57 187 187 ASN ASN D . n D 1 58 SER 58 188 188 SER SER D . n D 1 59 LYS 59 189 189 LYS LYS D . n D 1 60 TYR 60 190 190 TYR TYR D . n D 1 61 GLY 61 191 191 GLY GLY D . n D 1 62 THR 62 192 192 THR THR D . n D 1 63 VAL 63 193 193 VAL VAL D . n D 1 64 VAL 64 194 194 VAL VAL D . n D 1 65 LEU 65 195 195 LEU LEU D . n D 1 66 SER 66 196 196 SER SER D . n D 1 67 THR 67 197 197 THR THR D . n D 1 68 ASP 68 198 198 ASP ASP D . n D 1 69 PHE 69 199 199 PHE PHE D . n D 1 70 ILE 70 200 200 ILE ILE D . n D 1 71 LYS 71 201 201 LYS LYS D . n D 1 72 LYS 72 202 202 LYS LYS D . n D 1 73 ASP 73 203 203 ASP ASP D . n D 1 74 TRP 74 204 204 TRP TRP D . n D 1 75 THR 75 205 205 THR THR D . n D 1 76 ASN 76 206 206 ASN ASN D . n D 1 77 TYR 77 207 207 TYR TYR D . n D 1 78 GLU 78 208 208 GLU GLU D . n D 1 79 LEU 79 209 209 LEU LEU D . n D 1 80 ASP 80 210 210 ASP ASP D . n D 1 81 GLY 81 211 211 GLY GLY D . n D 1 82 LEU 82 212 212 LEU LEU D . n D 1 83 VAL 83 213 213 VAL VAL D . n D 1 84 ALA 84 214 214 ALA ALA D . n D 1 85 ARG 85 215 215 ARG ARG D . n D 1 86 GLU 86 216 216 GLU GLU D . n D 1 87 MET 87 217 217 MET MET D . n D 1 88 ASN 88 218 218 ASN ASN D . n D 1 89 GLY 89 219 219 GLY GLY D . n D 1 90 HIS 90 220 220 HIS HIS D . n D 1 91 LYS 91 221 221 LYS LYS D . n D 1 92 MET 92 222 222 MET MET D . n D 1 93 ILE 93 223 223 ILE ILE D . n D 1 94 LEU 94 224 224 LEU LEU D . n D 1 95 PRO 95 225 225 PRO PRO D . n D 1 96 ILE 96 226 226 ILE ILE D . n D 1 97 TRP 97 227 227 TRP TRP D . n D 1 98 HIS 98 228 228 HIS HIS D . n D 1 99 LYS 99 229 229 LYS LYS D . n D 1 100 ILE 100 230 230 ILE ILE D . n D 1 101 THR 101 231 231 THR THR D . n D 1 102 LYS 102 232 232 LYS LYS D . n D 1 103 ASN 103 233 233 ASN ASN D . n D 1 104 ASP 104 234 234 ASP ASP D . n D 1 105 VAL 105 235 235 VAL VAL D . n D 1 106 LEU 106 236 236 LEU LEU D . n D 1 107 ASP 107 237 237 ASP ASP D . n D 1 108 TYR 108 238 238 TYR TYR D . n D 1 109 SER 109 239 239 SER SER D . n D 1 110 PRO 110 240 240 PRO PRO D . n D 1 111 ASN 111 241 241 ASN ASN D . n D 1 112 LEU 112 242 242 LEU LEU D . n D 1 113 ALA 113 243 243 ALA ALA D . n D 1 114 ASP 114 244 244 ASP ASP D . n D 1 115 LYS 115 245 245 LYS LYS D . n D 1 116 VAL 116 246 246 VAL VAL D . n D 1 117 ALA 117 247 247 ALA ALA D . n D 1 118 LEU 118 248 248 LEU LEU D . n D 1 119 ASN 119 249 249 ASN ASN D . n D 1 120 THR 120 250 250 THR THR D . n D 1 121 SER 121 251 251 SER SER D . n D 1 122 VAL 122 252 252 VAL VAL D . n D 1 123 ASN 123 253 253 ASN ASN D . n D 1 124 SER 124 254 254 SER SER D . n D 1 125 ILE 125 255 255 ILE ILE D . n D 1 126 GLU 126 256 256 GLU GLU D . n D 1 127 GLU 127 257 257 GLU GLU D . n D 1 128 ILE 128 258 258 ILE ILE D . n D 1 129 ALA 129 259 259 ALA ALA D . n D 1 130 HIS 130 260 260 HIS HIS D . n D 1 131 GLN 131 261 261 GLN GLN D . n D 1 132 LEU 132 262 262 LEU LEU D . n D 1 133 ALA 133 263 263 ALA ALA D . n D 1 134 ASP 134 264 264 ASP ASP D . n D 1 135 VAL 135 265 265 VAL VAL D . n D 1 136 ILE 136 266 266 ILE ILE D . n D 1 137 LEU 137 267 267 LEU LEU D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 1O4 1 301 301 1O4 3AD A . F 2 1O4 1 301 301 1O4 3AD B . G 2 1O4 1 301 301 1O4 3AD C . H 2 1O4 1 301 301 1O4 3AD D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? phenix.real_space_refine ? ? ? 1.20.1_4487 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7UXU _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7UXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UXU _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 33.48 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7UXU _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0051 ? 4612 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.8913 ? 6292 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0505 ? 716 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0078 ? 884 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 12.7486 ? 1776 ? f_dihedral_angle_d ? ? # _struct.entry_id 7UXU _struct.title 'CryoEM structure of the TIR domain from AbTir in complex with 3AD' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UXU _struct_keywords.text ;2' cADPR, NADase, Bacterial TIR, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A0Q1J3X1_ACIBA _struct_ref.pdbx_db_accession A0A0Q1J3X1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EYDLFISHASEDKEDFVRPLAETLQQLGVNVWYDEFTLKVGDSLRQKIDSGLRNSKYGTVVLSTDFIKKDWTNYELDGLV AREMNGHKMILPIWHKITKNDVLDYSPNLADKVALNTSVNSIEEIAHQLADVIL ; _struct_ref.pdbx_align_begin 157 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7UXU A 4 ? 137 ? A0A0Q1J3X1 157 ? 290 ? 134 267 2 1 7UXU B 4 ? 137 ? A0A0Q1J3X1 157 ? 290 ? 134 267 3 1 7UXU C 4 ? 137 ? A0A0Q1J3X1 157 ? 290 ? 134 267 4 1 7UXU D 4 ? 137 ? A0A0Q1J3X1 157 ? 290 ? 134 267 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7UXU SER A 1 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 131 1 1 7UXU ASN A 2 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 132 2 1 7UXU ALA A 3 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 133 3 2 7UXU SER B 1 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 131 4 2 7UXU ASN B 2 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 132 5 2 7UXU ALA B 3 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 133 6 3 7UXU SER C 1 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 131 7 3 7UXU ASN C 2 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 132 8 3 7UXU ALA C 3 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 133 9 4 7UXU SER D 1 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 131 10 4 7UXU ASN D 2 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 132 11 4 7UXU ALA D 3 ? UNP A0A0Q1J3X1 ? ? 'expression tag' 133 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 12 ? LYS A 16 ? ALA A 142 LYS A 146 5 ? 5 HELX_P HELX_P2 AA2 PHE A 19 ? GLY A 31 ? PHE A 149 GLY A 161 1 ? 13 HELX_P HELX_P3 AA3 TYR A 36 ? LEU A 41 ? TYR A 166 LEU A 171 1 ? 6 HELX_P HELX_P4 AA4 SER A 46 ? ASN A 57 ? SER A 176 ASN A 187 1 ? 12 HELX_P HELX_P5 AA5 SER A 66 ? LYS A 72 ? SER A 196 LYS A 202 1 ? 7 HELX_P HELX_P6 AA6 LYS A 72 ? MET A 87 ? LYS A 202 MET A 217 1 ? 16 HELX_P HELX_P7 AA7 THR A 101 ? SER A 109 ? THR A 231 SER A 239 1 ? 9 HELX_P HELX_P8 AA8 ASN A 111 ? LYS A 115 ? ASN A 241 LYS A 245 5 ? 5 HELX_P HELX_P9 AA9 SER A 124 ? LEU A 137 ? SER A 254 LEU A 267 1 ? 14 HELX_P HELX_P10 AB1 ALA B 12 ? LYS B 16 ? ALA B 142 LYS B 146 5 ? 5 HELX_P HELX_P11 AB2 PHE B 19 ? GLY B 31 ? PHE B 149 GLY B 161 1 ? 13 HELX_P HELX_P12 AB3 TYR B 36 ? LEU B 41 ? TYR B 166 LEU B 171 1 ? 6 HELX_P HELX_P13 AB4 SER B 46 ? ASN B 57 ? SER B 176 ASN B 187 1 ? 12 HELX_P HELX_P14 AB5 SER B 66 ? LYS B 72 ? SER B 196 LYS B 202 1 ? 7 HELX_P HELX_P15 AB6 LYS B 72 ? MET B 87 ? LYS B 202 MET B 217 1 ? 16 HELX_P HELX_P16 AB7 THR B 101 ? SER B 109 ? THR B 231 SER B 239 1 ? 9 HELX_P HELX_P17 AB8 ASN B 111 ? LYS B 115 ? ASN B 241 LYS B 245 5 ? 5 HELX_P HELX_P18 AB9 SER B 124 ? LEU B 137 ? SER B 254 LEU B 267 1 ? 14 HELX_P HELX_P19 AC1 ALA C 12 ? LYS C 16 ? ALA C 142 LYS C 146 5 ? 5 HELX_P HELX_P20 AC2 PHE C 19 ? GLY C 31 ? PHE C 149 GLY C 161 1 ? 13 HELX_P HELX_P21 AC3 TYR C 36 ? LEU C 41 ? TYR C 166 LEU C 171 1 ? 6 HELX_P HELX_P22 AC4 SER C 46 ? ASN C 57 ? SER C 176 ASN C 187 1 ? 12 HELX_P HELX_P23 AC5 SER C 66 ? LYS C 72 ? SER C 196 LYS C 202 1 ? 7 HELX_P HELX_P24 AC6 LYS C 72 ? MET C 87 ? LYS C 202 MET C 217 1 ? 16 HELX_P HELX_P25 AC7 THR C 101 ? SER C 109 ? THR C 231 SER C 239 1 ? 9 HELX_P HELX_P26 AC8 ASN C 111 ? LYS C 115 ? ASN C 241 LYS C 245 5 ? 5 HELX_P HELX_P27 AC9 SER C 124 ? LEU C 137 ? SER C 254 LEU C 267 1 ? 14 HELX_P HELX_P28 AD1 ALA D 12 ? LYS D 16 ? ALA D 142 LYS D 146 5 ? 5 HELX_P HELX_P29 AD2 PHE D 19 ? GLY D 31 ? PHE D 149 GLY D 161 1 ? 13 HELX_P HELX_P30 AD3 TYR D 36 ? LEU D 41 ? TYR D 166 LEU D 171 1 ? 6 HELX_P HELX_P31 AD4 SER D 46 ? ASN D 57 ? SER D 176 ASN D 187 1 ? 12 HELX_P HELX_P32 AD5 SER D 66 ? LYS D 72 ? SER D 196 LYS D 202 1 ? 7 HELX_P HELX_P33 AD6 LYS D 72 ? MET D 87 ? LYS D 202 MET D 217 1 ? 16 HELX_P HELX_P34 AD7 THR D 101 ? SER D 109 ? THR D 231 SER D 239 1 ? 9 HELX_P HELX_P35 AD8 ASN D 111 ? LYS D 115 ? ASN D 241 LYS D 245 5 ? 5 HELX_P HELX_P36 AD9 SER D 124 ? LEU D 137 ? SER D 254 LEU D 267 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 34 ? TRP A 35 ? VAL A 164 TRP A 165 AA1 2 LEU A 7 ? SER A 10 ? LEU A 137 SER A 140 AA1 3 TYR A 60 ? LEU A 65 ? TYR A 190 LEU A 195 AA1 4 ILE A 93 ? TRP A 97 ? ILE A 223 TRP A 227 AA1 5 LEU A 118 ? ASN A 119 ? LEU A 248 ASN A 249 AA2 1 VAL B 34 ? TRP B 35 ? VAL B 164 TRP B 165 AA2 2 LEU B 7 ? SER B 10 ? LEU B 137 SER B 140 AA2 3 TYR B 60 ? LEU B 65 ? TYR B 190 LEU B 195 AA2 4 ILE B 93 ? TRP B 97 ? ILE B 223 TRP B 227 AA2 5 LEU B 118 ? ASN B 119 ? LEU B 248 ASN B 249 AA3 1 VAL C 34 ? TRP C 35 ? VAL C 164 TRP C 165 AA3 2 LEU C 7 ? SER C 10 ? LEU C 137 SER C 140 AA3 3 TYR C 60 ? LEU C 65 ? TYR C 190 LEU C 195 AA3 4 ILE C 93 ? TRP C 97 ? ILE C 223 TRP C 227 AA3 5 LEU C 118 ? ASN C 119 ? LEU C 248 ASN C 249 AA4 1 VAL D 34 ? TRP D 35 ? VAL D 164 TRP D 165 AA4 2 LEU D 7 ? SER D 10 ? LEU D 137 SER D 140 AA4 3 TYR D 60 ? LEU D 65 ? TYR D 190 LEU D 195 AA4 4 ILE D 93 ? TRP D 97 ? ILE D 223 TRP D 227 AA4 5 LEU D 118 ? ASN D 119 ? LEU D 248 ASN D 249 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O TRP A 35 ? O TRP A 165 N LEU A 7 ? N LEU A 137 AA1 2 3 N PHE A 8 ? N PHE A 138 O THR A 62 ? O THR A 192 AA1 3 4 N LEU A 65 ? N LEU A 195 O ILE A 96 ? O ILE A 226 AA1 4 5 N TRP A 97 ? N TRP A 227 O LEU A 118 ? O LEU A 248 AA2 1 2 O TRP B 35 ? O TRP B 165 N LEU B 7 ? N LEU B 137 AA2 2 3 N PHE B 8 ? N PHE B 138 O THR B 62 ? O THR B 192 AA2 3 4 N LEU B 65 ? N LEU B 195 O ILE B 96 ? O ILE B 226 AA2 4 5 N TRP B 97 ? N TRP B 227 O LEU B 118 ? O LEU B 248 AA3 1 2 O TRP C 35 ? O TRP C 165 N LEU C 7 ? N LEU C 137 AA3 2 3 N PHE C 8 ? N PHE C 138 O THR C 62 ? O THR C 192 AA3 3 4 N LEU C 65 ? N LEU C 195 O ILE C 96 ? O ILE C 226 AA3 4 5 N TRP C 97 ? N TRP C 227 O LEU C 118 ? O LEU C 248 AA4 1 2 O TRP D 35 ? O TRP D 165 N LEU D 7 ? N LEU D 137 AA4 2 3 N PHE D 8 ? N PHE D 138 O THR D 62 ? O THR D 192 AA4 3 4 N LEU D 65 ? N LEU D 195 O ILE D 96 ? O ILE D 226 AA4 4 5 N TRP D 97 ? N TRP D 227 O LEU D 118 ? O LEU D 248 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 149 ? ? -143.29 -56.52 2 1 MET A 222 ? ? -137.39 -41.01 3 1 PHE B 149 ? ? -141.49 -57.74 4 1 MET B 222 ? ? -137.87 -41.07 5 1 PHE C 149 ? ? -144.48 -57.06 6 1 MET C 222 ? ? -137.30 -41.24 7 1 PHE D 149 ? ? -144.81 -57.12 8 1 MET D 222 ? ? -137.48 -40.35 # _pdbx_helical_symmetry.entry_id 7UXU _pdbx_helical_symmetry.number_of_operations 4 _pdbx_helical_symmetry.rotation_per_n_subunits 174 _pdbx_helical_symmetry.rise_per_n_subunits 17.8 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_entry_details.entry_id 7UXU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.entry_id 7UXU _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7UXU _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 272949 _em_3d_reconstruction.resolution 2.74 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Filament of the AbTIR TIR domain in complex with 3AD' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7UXU _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'JEOL CRYO ARM 300' _em_imaging.mode OTHER _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 4000 _em_imaging.nominal_defocus_min 100 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type Quantifoil _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 281 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 96 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.entry_id 7UXU _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7UXU _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 131 ? A SER 1 2 1 Y 1 A ASN 132 ? A ASN 2 3 1 Y 1 A ALA 133 ? A ALA 3 4 1 Y 1 B SER 131 ? B SER 1 5 1 Y 1 B ASN 132 ? B ASN 2 6 1 Y 1 B ALA 133 ? B ALA 3 7 1 Y 1 C SER 131 ? C SER 1 8 1 Y 1 C ASN 132 ? C ASN 2 9 1 Y 1 C ALA 133 ? C ALA 3 10 1 Y 1 D SER 131 ? D SER 1 11 1 Y 1 D ASN 132 ? D ASN 2 12 1 Y 1 D ALA 133 ? D ALA 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1O4 C8 C N R 1 1O4 C5 C N N 2 1O4 C6 C N R 3 1O4 N6 N N N 4 1O4 N1 N Y N 5 1O4 C2 C N S 6 1O4 N3 N Y N 7 1O4 C4 C N N 8 1O4 N N Y N 9 1O4 C C N R 10 1O4 O O N N 11 1O4 C1 C N R 12 1O4 C10 C Y N 13 1O4 C11 C Y N 14 1O4 C12 C Y N 15 1O4 C13 C Y N 16 1O4 C14 C Y N 17 1O4 C15 C Y N 18 1O4 C16 C Y N 19 1O4 C17 C Y N 20 1O4 C18 C Y N 21 1O4 C19 C Y N 22 1O4 C20 C Y N 23 1O4 C21 C Y N 24 1O4 C22 C Y N 25 1O4 C23 C Y N 26 1O4 C3 C N R 27 1O4 C7 C N S 28 1O4 C9 C N R 29 1O4 N2 N Y N 30 1O4 N4 N N N 31 1O4 N5 N Y N 32 1O4 O1 O N N 33 1O4 O10 O N N 34 1O4 O11 O N N 35 1O4 O12 O N N 36 1O4 O2 O N N 37 1O4 O3 O N N 38 1O4 O4 O N N 39 1O4 O5 O N N 40 1O4 O6 O N N 41 1O4 O7 O N N 42 1O4 O8 O N N 43 1O4 O9 O N N 44 1O4 P P N N 45 1O4 P1 P N N 46 1O4 H6 H N N 47 1O4 H51 H N N 48 1O4 H52 H N N 49 1O4 H4 H N N 50 1O4 HN62 H N N 51 1O4 HN61 H N N 52 1O4 H2 H N N 53 1O4 H42 H N N 54 1O4 H41 H N N 55 1O4 H H N N 56 1O4 H1 H N N 57 1O4 H10 H N N 58 1O4 H13 H N N 59 1O4 H15 H N N 60 1O4 H18 H N N 61 1O4 H19 H N N 62 1O4 H20 H N N 63 1O4 H22 H N N 64 1O4 H23 H N N 65 1O4 H3 H N N 66 1O4 H5 H N N 67 1O4 H7 H N N 68 1O4 HN41 H N N 69 1O4 HN42 H N N 70 1O4 HO11 H N N 71 1O4 HO12 H N N 72 1O4 HO5 H N N 73 1O4 HO6 H N N 74 1O4 H8 H N N 75 1O4 H9 H N N 76 ALA N N N N 77 ALA CA C N S 78 ALA C C N N 79 ALA O O N N 80 ALA CB C N N 81 ALA OXT O N N 82 ALA H H N N 83 ALA H2 H N N 84 ALA HA H N N 85 ALA HB1 H N N 86 ALA HB2 H N N 87 ALA HB3 H N N 88 ALA HXT H N N 89 ARG N N N N 90 ARG CA C N S 91 ARG C C N N 92 ARG O O N N 93 ARG CB C N N 94 ARG CG C N N 95 ARG CD C N N 96 ARG NE N N N 97 ARG CZ C N N 98 ARG NH1 N N N 99 ARG NH2 N N N 100 ARG OXT O N N 101 ARG H H N N 102 ARG H2 H N N 103 ARG HA H N N 104 ARG HB2 H N N 105 ARG HB3 H N N 106 ARG HG2 H N N 107 ARG HG3 H N N 108 ARG HD2 H N N 109 ARG HD3 H N N 110 ARG HE H N N 111 ARG HH11 H N N 112 ARG HH12 H N N 113 ARG HH21 H N N 114 ARG HH22 H N N 115 ARG HXT H N N 116 ASN N N N N 117 ASN CA C N S 118 ASN C C N N 119 ASN O O N N 120 ASN CB C N N 121 ASN CG C N N 122 ASN OD1 O N N 123 ASN ND2 N N N 124 ASN OXT O N N 125 ASN H H N N 126 ASN H2 H N N 127 ASN HA H N N 128 ASN HB2 H N N 129 ASN HB3 H N N 130 ASN HD21 H N N 131 ASN HD22 H N N 132 ASN HXT H N N 133 ASP N N N N 134 ASP CA C N S 135 ASP C C N N 136 ASP O O N N 137 ASP CB C N N 138 ASP CG C N N 139 ASP OD1 O N N 140 ASP OD2 O N N 141 ASP OXT O N N 142 ASP H H N N 143 ASP H2 H N N 144 ASP HA H N N 145 ASP HB2 H N N 146 ASP HB3 H N N 147 ASP HD2 H N N 148 ASP HXT H N N 149 GLN N N N N 150 GLN CA C N S 151 GLN C C N N 152 GLN O O N N 153 GLN CB C N N 154 GLN CG C N N 155 GLN CD C N N 156 GLN OE1 O N N 157 GLN NE2 N N N 158 GLN OXT O N N 159 GLN H H N N 160 GLN H2 H N N 161 GLN HA H N N 162 GLN HB2 H N N 163 GLN HB3 H N N 164 GLN HG2 H N N 165 GLN HG3 H N N 166 GLN HE21 H N N 167 GLN HE22 H N N 168 GLN HXT H N N 169 GLU N N N N 170 GLU CA C N S 171 GLU C C N N 172 GLU O O N N 173 GLU CB C N N 174 GLU CG C N N 175 GLU CD C N N 176 GLU OE1 O N N 177 GLU OE2 O N N 178 GLU OXT O N N 179 GLU H H N N 180 GLU H2 H N N 181 GLU HA H N N 182 GLU HB2 H N N 183 GLU HB3 H N N 184 GLU HG2 H N N 185 GLU HG3 H N N 186 GLU HE2 H N N 187 GLU HXT H N N 188 GLY N N N N 189 GLY CA C N N 190 GLY C C N N 191 GLY O O N N 192 GLY OXT O N N 193 GLY H H N N 194 GLY H2 H N N 195 GLY HA2 H N N 196 GLY HA3 H N N 197 GLY HXT H N N 198 HIS N N N N 199 HIS CA C N S 200 HIS C C N N 201 HIS O O N N 202 HIS CB C N N 203 HIS CG C Y N 204 HIS ND1 N Y N 205 HIS CD2 C Y N 206 HIS CE1 C Y N 207 HIS NE2 N Y N 208 HIS OXT O N N 209 HIS H H N N 210 HIS H2 H N N 211 HIS HA H N N 212 HIS HB2 H N N 213 HIS HB3 H N N 214 HIS HD1 H N N 215 HIS HD2 H N N 216 HIS HE1 H N N 217 HIS HE2 H N N 218 HIS HXT H N N 219 ILE N N N N 220 ILE CA C N S 221 ILE C C N N 222 ILE O O N N 223 ILE CB C N S 224 ILE CG1 C N N 225 ILE CG2 C N N 226 ILE CD1 C N N 227 ILE OXT O N N 228 ILE H H N N 229 ILE H2 H N N 230 ILE HA H N N 231 ILE HB H N N 232 ILE HG12 H N N 233 ILE HG13 H N N 234 ILE HG21 H N N 235 ILE HG22 H N N 236 ILE HG23 H N N 237 ILE HD11 H N N 238 ILE HD12 H N N 239 ILE HD13 H N N 240 ILE HXT H N N 241 LEU N N N N 242 LEU CA C N S 243 LEU C C N N 244 LEU O O N N 245 LEU CB C N N 246 LEU CG C N N 247 LEU CD1 C N N 248 LEU CD2 C N N 249 LEU OXT O N N 250 LEU H H N N 251 LEU H2 H N N 252 LEU HA H N N 253 LEU HB2 H N N 254 LEU HB3 H N N 255 LEU HG H N N 256 LEU HD11 H N N 257 LEU HD12 H N N 258 LEU HD13 H N N 259 LEU HD21 H N N 260 LEU HD22 H N N 261 LEU HD23 H N N 262 LEU HXT H N N 263 LYS N N N N 264 LYS CA C N S 265 LYS C C N N 266 LYS O O N N 267 LYS CB C N N 268 LYS CG C N N 269 LYS CD C N N 270 LYS CE C N N 271 LYS NZ N N N 272 LYS OXT O N N 273 LYS H H N N 274 LYS H2 H N N 275 LYS HA H N N 276 LYS HB2 H N N 277 LYS HB3 H N N 278 LYS HG2 H N N 279 LYS HG3 H N N 280 LYS HD2 H N N 281 LYS HD3 H N N 282 LYS HE2 H N N 283 LYS HE3 H N N 284 LYS HZ1 H N N 285 LYS HZ2 H N N 286 LYS HZ3 H N N 287 LYS HXT H N N 288 MET N N N N 289 MET CA C N S 290 MET C C N N 291 MET O O N N 292 MET CB C N N 293 MET CG C N N 294 MET SD S N N 295 MET CE C N N 296 MET OXT O N N 297 MET H H N N 298 MET H2 H N N 299 MET HA H N N 300 MET HB2 H N N 301 MET HB3 H N N 302 MET HG2 H N N 303 MET HG3 H N N 304 MET HE1 H N N 305 MET HE2 H N N 306 MET HE3 H N N 307 MET HXT H N N 308 PHE N N N N 309 PHE CA C N S 310 PHE C C N N 311 PHE O O N N 312 PHE CB C N N 313 PHE CG C Y N 314 PHE CD1 C Y N 315 PHE CD2 C Y N 316 PHE CE1 C Y N 317 PHE CE2 C Y N 318 PHE CZ C Y N 319 PHE OXT O N N 320 PHE H H N N 321 PHE H2 H N N 322 PHE HA H N N 323 PHE HB2 H N N 324 PHE HB3 H N N 325 PHE HD1 H N N 326 PHE HD2 H N N 327 PHE HE1 H N N 328 PHE HE2 H N N 329 PHE HZ H N N 330 PHE HXT H N N 331 PRO N N N N 332 PRO CA C N S 333 PRO C C N N 334 PRO O O N N 335 PRO CB C N N 336 PRO CG C N N 337 PRO CD C N N 338 PRO OXT O N N 339 PRO H H N N 340 PRO HA H N N 341 PRO HB2 H N N 342 PRO HB3 H N N 343 PRO HG2 H N N 344 PRO HG3 H N N 345 PRO HD2 H N N 346 PRO HD3 H N N 347 PRO HXT H N N 348 SER N N N N 349 SER CA C N S 350 SER C C N N 351 SER O O N N 352 SER CB C N N 353 SER OG O N N 354 SER OXT O N N 355 SER H H N N 356 SER H2 H N N 357 SER HA H N N 358 SER HB2 H N N 359 SER HB3 H N N 360 SER HG H N N 361 SER HXT H N N 362 THR N N N N 363 THR CA C N S 364 THR C C N N 365 THR O O N N 366 THR CB C N R 367 THR OG1 O N N 368 THR CG2 C N N 369 THR OXT O N N 370 THR H H N N 371 THR H2 H N N 372 THR HA H N N 373 THR HB H N N 374 THR HG1 H N N 375 THR HG21 H N N 376 THR HG22 H N N 377 THR HG23 H N N 378 THR HXT H N N 379 TRP N N N N 380 TRP CA C N S 381 TRP C C N N 382 TRP O O N N 383 TRP CB C N N 384 TRP CG C Y N 385 TRP CD1 C Y N 386 TRP CD2 C Y N 387 TRP NE1 N Y N 388 TRP CE2 C Y N 389 TRP CE3 C Y N 390 TRP CZ2 C Y N 391 TRP CZ3 C Y N 392 TRP CH2 C Y N 393 TRP OXT O N N 394 TRP H H N N 395 TRP H2 H N N 396 TRP HA H N N 397 TRP HB2 H N N 398 TRP HB3 H N N 399 TRP HD1 H N N 400 TRP HE1 H N N 401 TRP HE3 H N N 402 TRP HZ2 H N N 403 TRP HZ3 H N N 404 TRP HH2 H N N 405 TRP HXT H N N 406 TYR N N N N 407 TYR CA C N S 408 TYR C C N N 409 TYR O O N N 410 TYR CB C N N 411 TYR CG C Y N 412 TYR CD1 C Y N 413 TYR CD2 C Y N 414 TYR CE1 C Y N 415 TYR CE2 C Y N 416 TYR CZ C Y N 417 TYR OH O N N 418 TYR OXT O N N 419 TYR H H N N 420 TYR H2 H N N 421 TYR HA H N N 422 TYR HB2 H N N 423 TYR HB3 H N N 424 TYR HD1 H N N 425 TYR HD2 H N N 426 TYR HE1 H N N 427 TYR HE2 H N N 428 TYR HH H N N 429 TYR HXT H N N 430 VAL N N N N 431 VAL CA C N S 432 VAL C C N N 433 VAL O O N N 434 VAL CB C N N 435 VAL CG1 C N N 436 VAL CG2 C N N 437 VAL OXT O N N 438 VAL H H N N 439 VAL H2 H N N 440 VAL HA H N N 441 VAL HB H N N 442 VAL HG11 H N N 443 VAL HG12 H N N 444 VAL HG13 H N N 445 VAL HG21 H N N 446 VAL HG22 H N N 447 VAL HG23 H N N 448 VAL HXT H N N 449 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1O4 N4 C14 sing N N 1 1O4 N3 C14 doub Y N 2 1O4 N3 C13 sing Y N 3 1O4 C14 C11 sing Y N 4 1O4 C13 N2 doub Y N 5 1O4 C11 N1 sing Y N 6 1O4 C11 C12 doub Y N 7 1O4 N1 C10 doub Y N 8 1O4 N2 C12 sing Y N 9 1O4 C12 N sing Y N 10 1O4 C10 N sing Y N 11 1O4 N C9 sing N N 12 1O4 O5 C8 sing N N 13 1O4 C9 C8 sing N N 14 1O4 C9 O4 sing N N 15 1O4 C19 C18 doub Y N 16 1O4 C19 C20 sing Y N 17 1O4 C8 C7 sing N N 18 1O4 C18 C17 sing Y N 19 1O4 O6 C7 sing N N 20 1O4 O4 C6 sing N N 21 1O4 C20 C21 doub Y N 22 1O4 C7 C6 sing N N 23 1O4 C17 N6 sing N N 24 1O4 C17 C16 doub Y N 25 1O4 C6 C5 sing N N 26 1O4 C21 C16 sing Y N 27 1O4 C21 C22 sing Y N 28 1O4 C16 C15 sing Y N 29 1O4 O3 C5 sing N N 30 1O4 O3 P1 sing N N 31 1O4 C22 C23 doub Y N 32 1O4 O2 P1 doub N N 33 1O4 C15 N5 doub Y N 34 1O4 P1 O7 sing N N 35 1O4 P1 O1 sing N N 36 1O4 C23 N5 sing Y N 37 1O4 N5 C sing N N 38 1O4 O1 P sing N N 39 1O4 C C1 sing N N 40 1O4 C O10 sing N N 41 1O4 C1 O12 sing N N 42 1O4 C1 C2 sing N N 43 1O4 P O9 doub N N 44 1O4 P O sing N N 45 1O4 P O8 sing N N 46 1O4 O10 C3 sing N N 47 1O4 O C4 sing N N 48 1O4 C4 C3 sing N N 49 1O4 C3 C2 sing N N 50 1O4 C2 O11 sing N N 51 1O4 C8 H6 sing N N 52 1O4 C5 H51 sing N N 53 1O4 C5 H52 sing N N 54 1O4 C6 H4 sing N N 55 1O4 N6 HN62 sing N N 56 1O4 N6 HN61 sing N N 57 1O4 C2 H2 sing N N 58 1O4 C4 H42 sing N N 59 1O4 C4 H41 sing N N 60 1O4 C H sing N N 61 1O4 C1 H1 sing N N 62 1O4 C10 H10 sing N N 63 1O4 C13 H13 sing N N 64 1O4 C15 H15 sing N N 65 1O4 C18 H18 sing N N 66 1O4 C19 H19 sing N N 67 1O4 C20 H20 sing N N 68 1O4 C22 H22 sing N N 69 1O4 C23 H23 sing N N 70 1O4 C3 H3 sing N N 71 1O4 C7 H5 sing N N 72 1O4 C9 H7 sing N N 73 1O4 N4 HN41 sing N N 74 1O4 N4 HN42 sing N N 75 1O4 O11 HO11 sing N N 76 1O4 O12 HO12 sing N N 77 1O4 O5 HO5 sing N N 78 1O4 O6 HO6 sing N N 79 1O4 O7 H8 sing N N 80 1O4 O8 H9 sing N N 81 ALA N CA sing N N 82 ALA N H sing N N 83 ALA N H2 sing N N 84 ALA CA C sing N N 85 ALA CA CB sing N N 86 ALA CA HA sing N N 87 ALA C O doub N N 88 ALA C OXT sing N N 89 ALA CB HB1 sing N N 90 ALA CB HB2 sing N N 91 ALA CB HB3 sing N N 92 ALA OXT HXT sing N N 93 ARG N CA sing N N 94 ARG N H sing N N 95 ARG N H2 sing N N 96 ARG CA C sing N N 97 ARG CA CB sing N N 98 ARG CA HA sing N N 99 ARG C O doub N N 100 ARG C OXT sing N N 101 ARG CB CG sing N N 102 ARG CB HB2 sing N N 103 ARG CB HB3 sing N N 104 ARG CG CD sing N N 105 ARG CG HG2 sing N N 106 ARG CG HG3 sing N N 107 ARG CD NE sing N N 108 ARG CD HD2 sing N N 109 ARG CD HD3 sing N N 110 ARG NE CZ sing N N 111 ARG NE HE sing N N 112 ARG CZ NH1 sing N N 113 ARG CZ NH2 doub N N 114 ARG NH1 HH11 sing N N 115 ARG NH1 HH12 sing N N 116 ARG NH2 HH21 sing N N 117 ARG NH2 HH22 sing N N 118 ARG OXT HXT sing N N 119 ASN N CA sing N N 120 ASN N H sing N N 121 ASN N H2 sing N N 122 ASN CA C sing N N 123 ASN CA CB sing N N 124 ASN CA HA sing N N 125 ASN C O doub N N 126 ASN C OXT sing N N 127 ASN CB CG sing N N 128 ASN CB HB2 sing N N 129 ASN CB HB3 sing N N 130 ASN CG OD1 doub N N 131 ASN CG ND2 sing N N 132 ASN ND2 HD21 sing N N 133 ASN ND2 HD22 sing N N 134 ASN OXT HXT sing N N 135 ASP N CA sing N N 136 ASP N H sing N N 137 ASP N H2 sing N N 138 ASP CA C sing N N 139 ASP CA CB sing N N 140 ASP CA HA sing N N 141 ASP C O doub N N 142 ASP C OXT sing N N 143 ASP CB CG sing N N 144 ASP CB HB2 sing N N 145 ASP CB HB3 sing N N 146 ASP CG OD1 doub N N 147 ASP CG OD2 sing N N 148 ASP OD2 HD2 sing N N 149 ASP OXT HXT sing N N 150 GLN N CA sing N N 151 GLN N H sing N N 152 GLN N H2 sing N N 153 GLN CA C sing N N 154 GLN CA CB sing N N 155 GLN CA HA sing N N 156 GLN C O doub N N 157 GLN C OXT sing N N 158 GLN CB CG sing N N 159 GLN CB HB2 sing N N 160 GLN CB HB3 sing N N 161 GLN CG CD sing N N 162 GLN CG HG2 sing N N 163 GLN CG HG3 sing N N 164 GLN CD OE1 doub N N 165 GLN CD NE2 sing N N 166 GLN NE2 HE21 sing N N 167 GLN NE2 HE22 sing N N 168 GLN OXT HXT sing N N 169 GLU N CA sing N N 170 GLU N H sing N N 171 GLU N H2 sing N N 172 GLU CA C sing N N 173 GLU CA CB sing N N 174 GLU CA HA sing N N 175 GLU C O doub N N 176 GLU C OXT sing N N 177 GLU CB CG sing N N 178 GLU CB HB2 sing N N 179 GLU CB HB3 sing N N 180 GLU CG CD sing N N 181 GLU CG HG2 sing N N 182 GLU CG HG3 sing N N 183 GLU CD OE1 doub N N 184 GLU CD OE2 sing N N 185 GLU OE2 HE2 sing N N 186 GLU OXT HXT sing N N 187 GLY N CA sing N N 188 GLY N H sing N N 189 GLY N H2 sing N N 190 GLY CA C sing N N 191 GLY CA HA2 sing N N 192 GLY CA HA3 sing N N 193 GLY C O doub N N 194 GLY C OXT sing N N 195 GLY OXT HXT sing N N 196 HIS N CA sing N N 197 HIS N H sing N N 198 HIS N H2 sing N N 199 HIS CA C sing N N 200 HIS CA CB sing N N 201 HIS CA HA sing N N 202 HIS C O doub N N 203 HIS C OXT sing N N 204 HIS CB CG sing N N 205 HIS CB HB2 sing N N 206 HIS CB HB3 sing N N 207 HIS CG ND1 sing Y N 208 HIS CG CD2 doub Y N 209 HIS ND1 CE1 doub Y N 210 HIS ND1 HD1 sing N N 211 HIS CD2 NE2 sing Y N 212 HIS CD2 HD2 sing N N 213 HIS CE1 NE2 sing Y N 214 HIS CE1 HE1 sing N N 215 HIS NE2 HE2 sing N N 216 HIS OXT HXT sing N N 217 ILE N CA sing N N 218 ILE N H sing N N 219 ILE N H2 sing N N 220 ILE CA C sing N N 221 ILE CA CB sing N N 222 ILE CA HA sing N N 223 ILE C O doub N N 224 ILE C OXT sing N N 225 ILE CB CG1 sing N N 226 ILE CB CG2 sing N N 227 ILE CB HB sing N N 228 ILE CG1 CD1 sing N N 229 ILE CG1 HG12 sing N N 230 ILE CG1 HG13 sing N N 231 ILE CG2 HG21 sing N N 232 ILE CG2 HG22 sing N N 233 ILE CG2 HG23 sing N N 234 ILE CD1 HD11 sing N N 235 ILE CD1 HD12 sing N N 236 ILE CD1 HD13 sing N N 237 ILE OXT HXT sing N N 238 LEU N CA sing N N 239 LEU N H sing N N 240 LEU N H2 sing N N 241 LEU CA C sing N N 242 LEU CA CB sing N N 243 LEU CA HA sing N N 244 LEU C O doub N N 245 LEU C OXT sing N N 246 LEU CB CG sing N N 247 LEU CB HB2 sing N N 248 LEU CB HB3 sing N N 249 LEU CG CD1 sing N N 250 LEU CG CD2 sing N N 251 LEU CG HG sing N N 252 LEU CD1 HD11 sing N N 253 LEU CD1 HD12 sing N N 254 LEU CD1 HD13 sing N N 255 LEU CD2 HD21 sing N N 256 LEU CD2 HD22 sing N N 257 LEU CD2 HD23 sing N N 258 LEU OXT HXT sing N N 259 LYS N CA sing N N 260 LYS N H sing N N 261 LYS N H2 sing N N 262 LYS CA C sing N N 263 LYS CA CB sing N N 264 LYS CA HA sing N N 265 LYS C O doub N N 266 LYS C OXT sing N N 267 LYS CB CG sing N N 268 LYS CB HB2 sing N N 269 LYS CB HB3 sing N N 270 LYS CG CD sing N N 271 LYS CG HG2 sing N N 272 LYS CG HG3 sing N N 273 LYS CD CE sing N N 274 LYS CD HD2 sing N N 275 LYS CD HD3 sing N N 276 LYS CE NZ sing N N 277 LYS CE HE2 sing N N 278 LYS CE HE3 sing N N 279 LYS NZ HZ1 sing N N 280 LYS NZ HZ2 sing N N 281 LYS NZ HZ3 sing N N 282 LYS OXT HXT sing N N 283 MET N CA sing N N 284 MET N H sing N N 285 MET N H2 sing N N 286 MET CA C sing N N 287 MET CA CB sing N N 288 MET CA HA sing N N 289 MET C O doub N N 290 MET C OXT sing N N 291 MET CB CG sing N N 292 MET CB HB2 sing N N 293 MET CB HB3 sing N N 294 MET CG SD sing N N 295 MET CG HG2 sing N N 296 MET CG HG3 sing N N 297 MET SD CE sing N N 298 MET CE HE1 sing N N 299 MET CE HE2 sing N N 300 MET CE HE3 sing N N 301 MET OXT HXT sing N N 302 PHE N CA sing N N 303 PHE N H sing N N 304 PHE N H2 sing N N 305 PHE CA C sing N N 306 PHE CA CB sing N N 307 PHE CA HA sing N N 308 PHE C O doub N N 309 PHE C OXT sing N N 310 PHE CB CG sing N N 311 PHE CB HB2 sing N N 312 PHE CB HB3 sing N N 313 PHE CG CD1 doub Y N 314 PHE CG CD2 sing Y N 315 PHE CD1 CE1 sing Y N 316 PHE CD1 HD1 sing N N 317 PHE CD2 CE2 doub Y N 318 PHE CD2 HD2 sing N N 319 PHE CE1 CZ doub Y N 320 PHE CE1 HE1 sing N N 321 PHE CE2 CZ sing Y N 322 PHE CE2 HE2 sing N N 323 PHE CZ HZ sing N N 324 PHE OXT HXT sing N N 325 PRO N CA sing N N 326 PRO N CD sing N N 327 PRO N H sing N N 328 PRO CA C sing N N 329 PRO CA CB sing N N 330 PRO CA HA sing N N 331 PRO C O doub N N 332 PRO C OXT sing N N 333 PRO CB CG sing N N 334 PRO CB HB2 sing N N 335 PRO CB HB3 sing N N 336 PRO CG CD sing N N 337 PRO CG HG2 sing N N 338 PRO CG HG3 sing N N 339 PRO CD HD2 sing N N 340 PRO CD HD3 sing N N 341 PRO OXT HXT sing N N 342 SER N CA sing N N 343 SER N H sing N N 344 SER N H2 sing N N 345 SER CA C sing N N 346 SER CA CB sing N N 347 SER CA HA sing N N 348 SER C O doub N N 349 SER C OXT sing N N 350 SER CB OG sing N N 351 SER CB HB2 sing N N 352 SER CB HB3 sing N N 353 SER OG HG sing N N 354 SER OXT HXT sing N N 355 THR N CA sing N N 356 THR N H sing N N 357 THR N H2 sing N N 358 THR CA C sing N N 359 THR CA CB sing N N 360 THR CA HA sing N N 361 THR C O doub N N 362 THR C OXT sing N N 363 THR CB OG1 sing N N 364 THR CB CG2 sing N N 365 THR CB HB sing N N 366 THR OG1 HG1 sing N N 367 THR CG2 HG21 sing N N 368 THR CG2 HG22 sing N N 369 THR CG2 HG23 sing N N 370 THR OXT HXT sing N N 371 TRP N CA sing N N 372 TRP N H sing N N 373 TRP N H2 sing N N 374 TRP CA C sing N N 375 TRP CA CB sing N N 376 TRP CA HA sing N N 377 TRP C O doub N N 378 TRP C OXT sing N N 379 TRP CB CG sing N N 380 TRP CB HB2 sing N N 381 TRP CB HB3 sing N N 382 TRP CG CD1 doub Y N 383 TRP CG CD2 sing Y N 384 TRP CD1 NE1 sing Y N 385 TRP CD1 HD1 sing N N 386 TRP CD2 CE2 doub Y N 387 TRP CD2 CE3 sing Y N 388 TRP NE1 CE2 sing Y N 389 TRP NE1 HE1 sing N N 390 TRP CE2 CZ2 sing Y N 391 TRP CE3 CZ3 doub Y N 392 TRP CE3 HE3 sing N N 393 TRP CZ2 CH2 doub Y N 394 TRP CZ2 HZ2 sing N N 395 TRP CZ3 CH2 sing Y N 396 TRP CZ3 HZ3 sing N N 397 TRP CH2 HH2 sing N N 398 TRP OXT HXT sing N N 399 TYR N CA sing N N 400 TYR N H sing N N 401 TYR N H2 sing N N 402 TYR CA C sing N N 403 TYR CA CB sing N N 404 TYR CA HA sing N N 405 TYR C O doub N N 406 TYR C OXT sing N N 407 TYR CB CG sing N N 408 TYR CB HB2 sing N N 409 TYR CB HB3 sing N N 410 TYR CG CD1 doub Y N 411 TYR CG CD2 sing Y N 412 TYR CD1 CE1 sing Y N 413 TYR CD1 HD1 sing N N 414 TYR CD2 CE2 doub Y N 415 TYR CD2 HD2 sing N N 416 TYR CE1 CZ doub Y N 417 TYR CE1 HE1 sing N N 418 TYR CE2 CZ sing Y N 419 TYR CE2 HE2 sing N N 420 TYR CZ OH sing N N 421 TYR OH HH sing N N 422 TYR OXT HXT sing N N 423 VAL N CA sing N N 424 VAL N H sing N N 425 VAL N H2 sing N N 426 VAL CA C sing N N 427 VAL CA CB sing N N 428 VAL CA HA sing N N 429 VAL C O doub N N 430 VAL C OXT sing N N 431 VAL CB CG1 sing N N 432 VAL CB CG2 sing N N 433 VAL CB HB sing N N 434 VAL CG1 HG11 sing N N 435 VAL CG1 HG12 sing N N 436 VAL CG1 HG13 sing N N 437 VAL CG2 HG21 sing N N 438 VAL CG2 HG22 sing N N 439 VAL CG2 HG23 sing N N 440 VAL OXT HXT sing N N 441 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 470 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Acinetobacter baumannii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 174.056 _em_helical_entity.axial_rise_per_subunit 17.867 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40.9 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ISOLDE ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? cryoSPARC v3.3.1 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Health and Medical Research Council (NHMRC, Australia)' Australia ? 1 'Australian Research Council (ARC)' Australia ? 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 1O4 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 1O4 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 7UXU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_