HEADER DNA BINDING PROTEIN/DNA 06-MAY-22 7UXY TITLE ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF PROTEIN VARIANT TITLE 2 REPLICATION INITIATOR PROTEIN REPE54 (L53G,Q54G,E55G) AND SYMMETRICAL TITLE 3 EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN TITLE 4 ADDITIONAL G-C RICH SEQUENCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*P*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP* COMPND 4 CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(A*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*P*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP* COMPND 10 AP*CP*AP*GP*GP*TP*CP*CP*GP*G)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: REPE, E, REP, ECOK12F045; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPLICATION INITIATOR REPE COMPLEX CO-CRYSTAL, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ORUN,C.D.SNOW REVDAT 3 01-NOV-23 7UXY 1 JRNL REVDAT 2 25-OCT-23 7UXY 1 REMARK REVDAT 1 17-MAY-23 7UXY 0 JRNL AUTH A.R.ORUN,E.T.SHIELDS,S.DMYTRIW,A.VAJAPAYAJULA,C.K.SLAUGHTER, JRNL AUTH 2 C.D.SNOW JRNL TITL MODULAR PROTEIN-DNA COCRYSTALS AS PRECISE, PROGRAMMABLE JRNL TITL 2 ASSEMBLY SCAFFOLDS. JRNL REF ACS NANO V. 17 13110 2023 JRNL REFN ESSN 1936-086X JRNL PMID 37407546 JRNL DOI 10.1021/ACSNANO.2C07282 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 11512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2100 - 6.2900 0.98 1373 153 0.1904 0.1963 REMARK 3 2 6.2900 - 5.0000 1.00 1338 150 0.2070 0.2427 REMARK 3 3 5.0000 - 4.3700 0.99 1303 148 0.2265 0.2603 REMARK 3 4 4.3700 - 3.9700 0.97 1280 142 0.2635 0.3053 REMARK 3 5 3.9700 - 3.6800 0.96 1254 137 0.3324 0.3682 REMARK 3 6 3.6800 - 3.4700 0.97 1253 137 0.3160 0.3177 REMARK 3 7 3.4700 - 3.2900 0.98 1287 144 0.2707 0.2555 REMARK 3 8 3.2900 - 3.1500 0.99 1277 136 0.2938 0.3145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.363 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3294 REMARK 3 ANGLE : 0.946 4723 REMARK 3 CHIRALITY : 0.071 511 REMARK 3 PLANARITY : 0.006 389 REMARK 3 DIHEDRAL : 27.630 869 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9820 -6.9112 2.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.7361 T22: 0.6374 REMARK 3 T33: 0.5353 T12: 0.0328 REMARK 3 T13: 0.1043 T23: -0.2254 REMARK 3 L TENSOR REMARK 3 L11: 0.5375 L22: 1.3686 REMARK 3 L33: 1.4951 L12: 0.3532 REMARK 3 L13: -0.0393 L23: 0.1568 REMARK 3 S TENSOR REMARK 3 S11: -0.2589 S12: -0.3393 S13: 0.1907 REMARK 3 S21: 0.1868 S22: 0.0018 S23: 0.0174 REMARK 3 S31: -0.3670 S32: -0.1211 S33: -0.1309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2728 -38.4873 -29.4682 REMARK 3 T TENSOR REMARK 3 T11: 1.2483 T22: 1.3322 REMARK 3 T33: 0.9494 T12: 0.0803 REMARK 3 T13: 0.7161 T23: -1.2152 REMARK 3 L TENSOR REMARK 3 L11: 0.5778 L22: 0.5579 REMARK 3 L33: 0.6042 L12: -0.5021 REMARK 3 L13: -0.4528 L23: 0.3020 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.4078 S13: -0.3611 REMARK 3 S21: -0.3580 S22: -0.0779 S23: -0.2715 REMARK 3 S31: 0.4401 S32: 0.1441 S33: -0.0249 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1151 -43.3278 -34.8606 REMARK 3 T TENSOR REMARK 3 T11: 1.4967 T22: 1.4180 REMARK 3 T33: 1.1796 T12: 0.2725 REMARK 3 T13: 0.8235 T23: -1.2463 REMARK 3 L TENSOR REMARK 3 L11: 0.5334 L22: 0.9442 REMARK 3 L33: 0.1994 L12: -0.3662 REMARK 3 L13: 0.0694 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.2723 S12: 0.3995 S13: -0.2013 REMARK 3 S21: -0.4267 S22: -0.0882 S23: -0.1213 REMARK 3 S31: 0.2147 S32: 0.2212 S33: 0.0935 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3846 -11.9401 -1.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.6764 T22: 0.6181 REMARK 3 T33: 0.5633 T12: -0.0060 REMARK 3 T13: 0.1758 T23: -0.2224 REMARK 3 L TENSOR REMARK 3 L11: 0.5880 L22: 0.8450 REMARK 3 L33: 0.2142 L12: 0.3470 REMARK 3 L13: 0.3200 L23: 0.1886 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: -0.0132 S13: -0.0630 REMARK 3 S21: 0.4192 S22: 0.1252 S23: -0.1089 REMARK 3 S31: -0.3581 S32: -0.1447 S33: -0.0138 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7140 -47.6492 -14.5052 REMARK 3 T TENSOR REMARK 3 T11: 0.3891 T22: 0.3615 REMARK 3 T33: 1.2653 T12: 0.1708 REMARK 3 T13: 0.6425 T23: -0.8507 REMARK 3 L TENSOR REMARK 3 L11: 0.1020 L22: 0.1781 REMARK 3 L33: 0.3944 L12: -0.1364 REMARK 3 L13: -0.1563 L23: 0.1892 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: 0.1970 S13: -0.4444 REMARK 3 S21: -0.2980 S22: 0.2312 S23: -0.0808 REMARK 3 S31: 0.1499 S32: 0.1217 S33: 0.4529 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3272 -48.3032 -6.3397 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.4542 REMARK 3 T33: 1.2088 T12: 0.0821 REMARK 3 T13: 0.5042 T23: -0.1810 REMARK 3 L TENSOR REMARK 3 L11: 0.8656 L22: 0.4355 REMARK 3 L33: 0.8628 L12: 0.0142 REMARK 3 L13: 0.3820 L23: -0.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.1686 S13: -0.2761 REMARK 3 S21: -0.0712 S22: 0.1961 S23: -0.0837 REMARK 3 S31: 0.0398 S32: 0.1451 S33: 0.1620 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 133 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1803 -38.2392 -5.1680 REMARK 3 T TENSOR REMARK 3 T11: -0.3464 T22: 0.3040 REMARK 3 T33: 0.7343 T12: 0.2384 REMARK 3 T13: 0.5758 T23: -0.4434 REMARK 3 L TENSOR REMARK 3 L11: 0.5117 L22: 0.1702 REMARK 3 L33: 0.1478 L12: -0.0522 REMARK 3 L13: -0.1512 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: -0.1855 S12: -0.0955 S13: -0.8149 REMARK 3 S21: -0.0571 S22: 0.0718 S23: 0.1888 REMARK 3 S31: 0.3179 S32: -0.3809 S33: 0.1555 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9066 -30.9438 -7.7071 REMARK 3 T TENSOR REMARK 3 T11: 0.4466 T22: 0.4955 REMARK 3 T33: 0.8230 T12: -0.1695 REMARK 3 T13: 0.1050 T23: -0.1868 REMARK 3 L TENSOR REMARK 3 L11: 1.5071 L22: 1.9776 REMARK 3 L33: 2.3344 L12: 0.5012 REMARK 3 L13: -0.1035 L23: 0.7978 REMARK 3 S TENSOR REMARK 3 S11: -0.0989 S12: 0.1747 S13: -0.2496 REMARK 3 S21: -0.1983 S22: 0.2359 S23: 0.1602 REMARK 3 S31: 0.0837 S32: -0.3060 S33: 0.0642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 REMARK 200 DATA SCALING SOFTWARE : XSCALE JAN 31, 2020, SCALA REMARK 200 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11671 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 34.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52530 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 7U6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 350 MM MGCL2, 30% PEG 400, AND 100 MM REMARK 280 TRIS HCL, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.05500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.71300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.41300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.05500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.71300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.41300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.05500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.71300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.41300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.05500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.71300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.41300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 GLY C 53 REMARK 465 GLY C 54 REMARK 465 GLY C 55 REMARK 465 ARG C 98 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 LEU C 142 REMARK 465 GLN C 143 REMARK 465 ASN C 144 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA A 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA A 1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 1 C2 N3 C4 REMARK 470 DA B 2 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA B 2 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA B 2 C2 N3 C4 REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG A 13 NH2 ARG C 206 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 32 C5' DG A 32 C4' 0.045 REMARK 500 DG A 32 C3' DG A 32 C2' -0.072 REMARK 500 DG A 32 O3' DG A 32 C3' -0.100 REMARK 500 DG A 32 N9 DG A 32 C4 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 2 O5' - P - OP1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC A 2 O5' - P - OP2 ANGL. DEV. = -11.5 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT A 10 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC A 30 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG A 31 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG A 32 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG A 32 N3 - C4 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 3 O4' - C1' - C2' ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 9.7 DEGREES REMARK 500 DC B 4 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG B 14 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 132 108.69 -50.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 203 O REMARK 620 2 GLU C 77 OE2 62.7 REMARK 620 3 ASP C 81 OD1 148.4 86.0 REMARK 620 4 HOH C 403 O 115.6 115.5 72.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 204 O REMARK 620 2 HOH A 205 O 78.0 REMARK 620 3 DG B 27 OP1 98.9 96.6 REMARK 620 4 HOH B 202 O 144.0 137.8 77.2 REMARK 620 5 HOH B 205 O 142.5 64.9 91.1 73.4 REMARK 620 6 HOH B 212 O 98.2 84.8 162.7 90.1 73.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 27 OP2 REMARK 620 2 HOH B 201 O 64.2 REMARK 620 3 HOH B 203 O 69.0 13.9 REMARK 620 4 HOH B 204 O 58.2 14.5 10.9 REMARK 620 5 HOH B 207 O 69.4 10.7 3.8 12.1 REMARK 620 6 HOH B 210 O 74.7 22.3 8.6 17.4 11.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 234 OE1 REMARK 620 2 HOH C 404 O 66.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RVA RELATED DB: PDB REMARK 900 7RVA CONTAINS A SIMILAR REPE PROTEIN BOUND TO A SHORTER DNA DUPLEX. REMARK 900 RELATED ID: 7U6K RELATED DB: PDB REMARK 900 7U6K WAS THE STARTING MODEL FOR THIS STRUCTURE AND CONTAINS A REMARK 900 SIMILAR REPE PROTEIN BOUND TO THE SAME DNA DUPLEX. REMARK 900 RELATED ID: 7U7O RELATED DB: PDB REMARK 900 7U7O CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. REMARK 900 RELATED ID: 7UFX RELATED DB: PDB REMARK 900 7UFX CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. REMARK 900 RELATED ID: 7UR0 RELATED DB: PDB REMARK 900 7UR0 CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. REMARK 900 RELATED ID: 7UOG RELATED DB: PDB REMARK 900 7UOG CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. REMARK 900 RELATED ID: 7UV7 RELATED DB: PDB REMARK 900 7UV7 CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. REMARK 900 RELATED ID: 7UV6 RELATED DB: PDB REMARK 900 7UV6 CONTAINS A SIMILAR REPE PROTEIN BOUND TO A DIFFERENT DNA REMARK 900 DUPLEX. DBREF 7UXY A 1 32 PDB 7UXY 7UXY 1 32 DBREF 7UXY B 2 33 PDB 7UXY 7UXY 2 33 DBREF 7UXY C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 7UXY MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 7UXY ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 7UXY GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 7UXY SER C -8 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 7UXY HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 7UXY GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 7UXY SER C 0 UNP P03856 EXPRESSION TAG SEQADV 7UXY GLY C 53 UNP P03856 LEU 53 ENGINEERED MUTATION SEQADV 7UXY GLY C 54 UNP P03856 GLN 54 ENGINEERED MUTATION SEQADV 7UXY GLY C 55 UNP P03856 GLU 55 ENGINEERED MUTATION SEQADV 7UXY PRO C 118 UNP P03856 ARG 118 ENGINEERED MUTATION SEQRES 1 A 32 DA DC DC DC DG DG DA DC DC DT DG DT DG SEQRES 2 A 32 DA DC DA DA DA DT DT DG DC DC DC DT DC SEQRES 3 A 32 DA DG DA DC DG DG SEQRES 1 B 32 DA DG DC DC DG DT DC DT DG DA DG DG DG SEQRES 2 B 32 DC DA DA DT DT DT DG DT DC DA DC DA DG SEQRES 3 B 32 DG DT DC DC DG DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR GLY SEQRES 6 C 263 GLY GLY HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG A 101 1 HET MG A 102 1 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG C 301 1 HET MG C 302 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 8(MG 2+) FORMUL 12 HOH *33(H2 O) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 PHE C 71 1 8 HELIX 4 AA4 THR C 74 SER C 88 1 15 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 ILE C 140 1 6 HELIX 7 AA7 SER C 152 THR C 154 5 3 HELIX 8 AA8 ASN C 159 GLN C 171 1 13 HELIX 9 AA9 ILE C 185 TYR C 192 1 8 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 2 ILE C 59 HIS C 63 0 SHEET 2 AA2 2 LEU C 126 HIS C 130 -1 O TYR C 127 N ILE C 62 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O PHE C 240 N VAL C 181 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ILE C 227 O VAL C 239 LINK MG MG A 101 O HOH A 211 1555 1555 2.17 LINK MG MG A 102 O HOH B 208 1555 4555 2.05 LINK O HOH A 203 MG MG C 302 1555 1555 2.53 LINK O HOH A 204 MG MG B 102 4555 1555 1.98 LINK O HOH A 205 MG MG B 102 4555 1555 2.53 LINK OP2 DG B 27 MG MG B 101 1555 4555 1.98 LINK OP1 DG B 27 MG MG B 102 1555 1555 2.03 LINK MG MG B 101 O HOH B 201 1555 4555 2.05 LINK MG MG B 101 O HOH B 203 1555 4555 1.97 LINK MG MG B 101 O HOH B 204 1555 1555 2.17 LINK MG MG B 101 O HOH B 207 1555 4555 1.96 LINK MG MG B 101 O HOH B 210 1555 4555 2.01 LINK MG MG B 102 O HOH B 202 1555 1555 2.17 LINK MG MG B 102 O HOH B 205 1555 1555 1.97 LINK MG MG B 102 O HOH B 212 1555 4555 2.33 LINK OE2 GLU C 77 MG MG C 302 1555 1555 2.46 LINK OD1 ASP C 81 MG MG C 302 1555 1555 2.28 LINK OE1 GLN C 234 MG MG C 301 1555 1555 2.92 LINK MG MG C 301 O HOH C 404 1555 1555 2.44 LINK MG MG C 302 O HOH C 403 1555 1555 2.22 CRYST1 74.110 129.426 136.826 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007309 0.00000