HEADER LIGASE 06-MAY-22 7UYJ TITLE STRUCTURE OF RNF31 IN COMPLEX WITH FP06652, A HELICON POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOIL-1-INTERACTING PROTEIN,HOIP,RING FINGER PROTEIN 31,ZINC COMPND 5 IN-BETWEEN-RING-FINGER UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HELICON FP06652; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: STAPLED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31, ZIBRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, COMPLEX, STAPLED, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AGARWAL,T.THOMSON,S.WAHL,W.WALKUP,T.OLSEN,G.VERDINE,J.MCGEE REVDAT 2 25-OCT-23 7UYJ 1 REMARK REVDAT 1 28-DEC-22 7UYJ 0 JRNL AUTH K.LI,O.S.TOKAREVA,T.M.THOMSON,S.C.T.WAHL,T.L.TRAVALINE, JRNL AUTH 2 J.D.RAMIREZ,S.K.CHOUDARY,S.AGARWAL,W.G.WALKUP 4TH,T.J.OLSEN, JRNL AUTH 3 M.J.BRENNAN,G.L.VERDINE,J.H.MCGEE JRNL TITL DE NOVO MAPPING OF ALPHA-HELIX RECOGNITION SITES ON PROTEIN JRNL TITL 2 SURFACES USING UNBIASED LIBRARIES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 35119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36534810 JRNL DOI 10.1073/PNAS.2210435119 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4444 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8000 - 4.6400 1.00 2599 125 0.1844 0.2419 REMARK 3 2 4.6400 - 3.6800 1.00 2535 115 0.1842 0.2340 REMARK 3 3 3.6800 - 3.2200 1.00 2505 135 0.2279 0.2909 REMARK 3 4 3.2200 - 2.9200 1.00 2503 134 0.2582 0.2667 REMARK 3 5 2.9200 - 2.7100 1.00 2450 152 0.2534 0.3067 REMARK 3 6 2.7100 - 2.5500 1.00 2483 148 0.2869 0.3589 REMARK 3 7 2.5500 - 2.4300 1.00 2494 120 0.2914 0.3587 REMARK 3 8 2.4300 - 2.3200 1.00 2505 125 0.3104 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3100 REMARK 3 ANGLE : 0.633 4207 REMARK 3 CHIRALITY : 0.035 462 REMARK 3 PLANARITY : 0.006 563 REMARK 3 DIHEDRAL : 4.863 426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0651 -19.0633 7.7695 REMARK 3 T TENSOR REMARK 3 T11: 0.3807 T22: 0.7088 REMARK 3 T33: 0.5640 T12: -0.0991 REMARK 3 T13: 0.0595 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 9.2449 L22: 3.8297 REMARK 3 L33: 6.0803 L12: 5.8053 REMARK 3 L13: 6.4369 L23: 4.4692 REMARK 3 S TENSOR REMARK 3 S11: -0.6999 S12: 0.1756 S13: 0.4748 REMARK 3 S21: -0.2624 S22: 0.1936 S23: 1.1349 REMARK 3 S31: 0.0624 S32: -0.4374 S33: 0.4724 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6712 -20.0662 9.2948 REMARK 3 T TENSOR REMARK 3 T11: 0.3291 T22: 0.5032 REMARK 3 T33: 0.2854 T12: -0.0097 REMARK 3 T13: 0.0059 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 6.5045 L22: 2.5203 REMARK 3 L33: 2.5615 L12: 1.7706 REMARK 3 L13: -0.3784 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: 0.2734 S13: -0.2554 REMARK 3 S21: 0.1008 S22: 0.1011 S23: 0.0554 REMARK 3 S31: 0.1981 S32: 0.1985 S33: 0.1218 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0705 -16.6130 3.8066 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.7622 REMARK 3 T33: 0.3852 T12: -0.0608 REMARK 3 T13: 0.0951 T23: -0.0597 REMARK 3 L TENSOR REMARK 3 L11: 7.4396 L22: 4.4238 REMARK 3 L33: 3.9742 L12: 3.1262 REMARK 3 L13: 2.6143 L23: -1.5739 REMARK 3 S TENSOR REMARK 3 S11: -0.5225 S12: 1.8926 S13: -0.1299 REMARK 3 S21: -0.8745 S22: 0.4202 S23: -0.3826 REMARK 3 S31: 0.3886 S32: 0.1720 S33: -0.0998 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5396 -19.4222 4.6303 REMARK 3 T TENSOR REMARK 3 T11: 0.3415 T22: 0.6329 REMARK 3 T33: 0.3313 T12: -0.0894 REMARK 3 T13: 0.0024 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 7.2500 L22: 4.9211 REMARK 3 L33: 7.2578 L12: 0.7404 REMARK 3 L13: -2.1441 L23: -2.3020 REMARK 3 S TENSOR REMARK 3 S11: -0.5567 S12: 0.8742 S13: -0.2207 REMARK 3 S21: -0.7882 S22: 0.5007 S23: 0.1902 REMARK 3 S31: 0.4894 S32: -0.3356 S33: 0.0178 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6579 12.2907 32.7062 REMARK 3 T TENSOR REMARK 3 T11: 0.5389 T22: 0.6095 REMARK 3 T33: 0.6927 T12: 0.2207 REMARK 3 T13: 0.0666 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 7.3609 L22: 9.4648 REMARK 3 L33: 1.4862 L12: -6.2556 REMARK 3 L13: -2.8613 L23: 3.6705 REMARK 3 S TENSOR REMARK 3 S11: -0.5800 S12: -0.6862 S13: 0.0927 REMARK 3 S21: 0.1214 S22: 0.3090 S23: 0.2799 REMARK 3 S31: -0.1159 S32: -0.8742 S33: 0.2494 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6911 2.4166 26.4021 REMARK 3 T TENSOR REMARK 3 T11: 0.4829 T22: 0.6393 REMARK 3 T33: 0.7534 T12: 0.0296 REMARK 3 T13: 0.0441 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 9.3053 L22: 3.5437 REMARK 3 L33: 4.0844 L12: -5.2544 REMARK 3 L13: -2.3949 L23: 2.7819 REMARK 3 S TENSOR REMARK 3 S11: 0.7005 S12: 1.0732 S13: -1.3234 REMARK 3 S21: -0.3290 S22: -0.8154 S23: 1.1576 REMARK 3 S31: 0.5018 S32: -0.7869 S33: 0.3851 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0409 17.6864 22.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.9830 T22: 0.8137 REMARK 3 T33: 0.7504 T12: 0.3499 REMARK 3 T13: 0.1848 T23: 0.2514 REMARK 3 L TENSOR REMARK 3 L11: 9.8382 L22: 8.1395 REMARK 3 L33: 3.4713 L12: -5.9713 REMARK 3 L13: -1.4846 L23: 2.8460 REMARK 3 S TENSOR REMARK 3 S11: 0.3688 S12: 1.6706 S13: 1.4291 REMARK 3 S21: -1.6130 S22: -0.2068 S23: 0.3748 REMARK 3 S31: -1.0186 S32: -0.4811 S33: -0.1769 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5673 8.4867 17.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.4094 T22: 0.5766 REMARK 3 T33: 0.4901 T12: 0.1416 REMARK 3 T13: 0.0907 T23: 0.0856 REMARK 3 L TENSOR REMARK 3 L11: 5.1897 L22: 4.7410 REMARK 3 L33: 6.3310 L12: -0.3394 REMARK 3 L13: -0.0628 L23: 0.0279 REMARK 3 S TENSOR REMARK 3 S11: 0.2638 S12: 1.0683 S13: 0.4684 REMARK 3 S21: -0.4935 S22: 0.3438 S23: 0.1628 REMARK 3 S31: -0.6413 S32: -0.3683 S33: -0.2375 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7370 2.6467 34.6060 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.5846 REMARK 3 T33: 0.5424 T12: 0.0565 REMARK 3 T13: -0.0073 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 6.0493 L22: 5.3094 REMARK 3 L33: 4.9225 L12: 1.2574 REMARK 3 L13: -0.8609 L23: -1.9939 REMARK 3 S TENSOR REMARK 3 S11: -0.4055 S12: -0.4122 S13: -0.5852 REMARK 3 S21: 0.5248 S22: -0.1858 S23: -0.5210 REMARK 3 S31: 0.2015 S32: -0.1161 S33: -0.0906 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5926 10.0985 22.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.4198 T22: 0.3188 REMARK 3 T33: 0.4535 T12: -0.0204 REMARK 3 T13: 0.0841 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 4.6567 L22: 3.5759 REMARK 3 L33: 8.2863 L12: -1.5101 REMARK 3 L13: -3.1670 L23: 1.5039 REMARK 3 S TENSOR REMARK 3 S11: 0.4821 S12: 0.2940 S13: 0.7293 REMARK 3 S21: -0.4894 S22: -0.1716 S23: -0.2005 REMARK 3 S31: -1.2619 S32: 0.0199 S33: -0.4397 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5457 10.5064 30.4672 REMARK 3 T TENSOR REMARK 3 T11: 0.5507 T22: 0.3141 REMARK 3 T33: 0.4961 T12: 0.0469 REMARK 3 T13: 0.0935 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 4.1032 L22: 3.6982 REMARK 3 L33: 7.6214 L12: -1.1385 REMARK 3 L13: -0.7253 L23: 1.3793 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: -0.5333 S13: 0.4603 REMARK 3 S21: 0.3693 S22: 0.1800 S23: 0.0252 REMARK 3 S31: -0.7609 S32: 0.1214 S33: -0.2375 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3787 8.5189 11.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.9529 T22: 1.6090 REMARK 3 T33: 1.1624 T12: 0.1447 REMARK 3 T13: 0.0063 T23: -0.1782 REMARK 3 L TENSOR REMARK 3 L11: 2.6334 L22: 1.0461 REMARK 3 L33: 0.1223 L12: -1.5601 REMARK 3 L13: -0.0419 L23: -0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.5352 S12: 1.5725 S13: -0.5382 REMARK 3 S21: 0.3395 S22: -0.4825 S23: 1.2294 REMARK 3 S31: -0.8137 S32: -1.4054 S33: 0.1006 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3743 -9.2671 13.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.4502 REMARK 3 T33: 0.4540 T12: -0.0484 REMARK 3 T13: 0.0360 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 5.4306 L22: 4.0165 REMARK 3 L33: 9.6752 L12: -4.6123 REMARK 3 L13: 5.9003 L23: -5.3744 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.2503 S13: 0.1023 REMARK 3 S21: -0.1249 S22: 0.7211 S23: 0.9794 REMARK 3 S31: 0.1097 S32: -0.4334 S33: -0.1206 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2461 -3.6828 25.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.2696 T22: 0.5674 REMARK 3 T33: 0.5711 T12: 0.0760 REMARK 3 T13: 0.0447 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.5528 L22: 6.7007 REMARK 3 L33: 9.6204 L12: -0.8465 REMARK 3 L13: 2.4836 L23: 2.4200 REMARK 3 S TENSOR REMARK 3 S11: -0.2031 S12: -0.0753 S13: -0.2541 REMARK 3 S21: 0.4754 S22: 0.3936 S23: -0.0140 REMARK 3 S31: 0.6406 S32: 0.4746 S33: 0.0597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7UYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000265102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21131 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 61.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS (0.2M DL-GLUTAMIC REMARK 280 ACID MONOHYDRATE; 0.2M DL-ALANINE; 0.2M GLYCINE; 0.2M DL-LYSINE REMARK 280 MONOHYDROCHLORIDE; 0.2M DL-SERINE),0.1 M BUFFER SYSTEM 1 REMARK 280 (IMIDAZOLE; MES MONOHYDRATE (ACID) PH 6.5), 30.0% PRECIPITANT REMARK 280 MIX 1 (40% V/V PEG 500* MME; 20 % W/V PEG 20000), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.05000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.10000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 62.10000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.05000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 172 REMARK 465 ALA B 173 REMARK 465 LEU B 174 REMARK 465 GLU B 175 REMARK 465 GLN B 176 REMARK 465 LEU B 177 REMARK 465 LEU B 178 REMARK 465 GLU B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 94 52.36 -109.58 REMARK 500 THR A 108 -81.71 -112.36 REMARK 500 TYR A 124 78.76 -67.40 REMARK 500 ARG A 170 50.48 -119.37 REMARK 500 ALA B 61 39.06 -89.69 REMARK 500 GLN B 90 62.63 -105.71 REMARK 500 TYR B 94 42.94 -92.00 REMARK 500 THR B 108 -83.97 -116.16 REMARK 500 THR B 167 46.31 -141.05 REMARK 500 ARG B 170 52.63 81.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7UWI RELATED DB: PDB REMARK 900 A RELATED STRUCTURE TO BE PUBLISHED IN THE SAME PAPER REMARK 900 RELATED ID: 7UWO RELATED DB: PDB REMARK 900 A RELATED STRUCTURE TO BE PUBLISHED IN THE SAME PAPER DBREF 7UYJ A 1 179 UNP Q96EP0 RNF31_HUMAN 1 179 DBREF 7UYJ B 1 179 UNP Q96EP0 RNF31_HUMAN 1 179 DBREF 7UYJ C 1 17 PDB 7UYJ 7UYJ 1 17 DBREF 7UYJ D 1 17 PDB 7UYJ 7UYJ 1 17 SEQADV 7UYJ GLY A -4 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ PRO A -3 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ LEU A -2 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ GLY A -1 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ SER A 0 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ GLY B -4 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ PRO B -3 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ LEU B -2 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ GLY B -1 UNP Q96EP0 EXPRESSION TAG SEQADV 7UYJ SER B 0 UNP Q96EP0 EXPRESSION TAG SEQRES 1 A 184 GLY PRO LEU GLY SER MET PRO GLY GLU GLU GLU GLU ARG SEQRES 2 A 184 ALA PHE LEU VAL ALA ARG GLU GLU LEU ALA SER ALA LEU SEQRES 3 A 184 ARG ARG ASP SER GLY GLN ALA PHE SER LEU GLU GLN LEU SEQRES 4 A 184 ARG PRO LEU LEU ALA SER SER LEU PRO LEU ALA ALA ARG SEQRES 5 A 184 TYR LEU GLN LEU ASP ALA ALA ARG LEU VAL ARG CYS ASN SEQRES 6 A 184 ALA HIS GLY GLU PRO ARG ASN TYR LEU ASN THR LEU SER SEQRES 7 A 184 THR ALA LEU ASN ILE LEU GLU LYS TYR GLY ARG ASN LEU SEQRES 8 A 184 LEU SER PRO GLN ARG PRO ARG TYR TRP ARG GLY VAL LYS SEQRES 9 A 184 PHE ASN ASN PRO VAL PHE ARG SER THR VAL ASP ALA VAL SEQRES 10 A 184 GLN GLY GLY ARG ASP VAL LEU ARG LEU TYR GLY TYR THR SEQRES 11 A 184 GLU GLU GLN PRO ASP GLY LEU SER PHE PRO GLU GLY GLN SEQRES 12 A 184 GLU GLU PRO ASP GLU HIS GLN VAL ALA THR VAL THR LEU SEQRES 13 A 184 GLU VAL LEU LEU LEU ARG THR GLU LEU SER LEU LEU LEU SEQRES 14 A 184 GLN ASN THR HIS PRO ARG GLN GLN ALA LEU GLU GLN LEU SEQRES 15 A 184 LEU GLU SEQRES 1 B 184 GLY PRO LEU GLY SER MET PRO GLY GLU GLU GLU GLU ARG SEQRES 2 B 184 ALA PHE LEU VAL ALA ARG GLU GLU LEU ALA SER ALA LEU SEQRES 3 B 184 ARG ARG ASP SER GLY GLN ALA PHE SER LEU GLU GLN LEU SEQRES 4 B 184 ARG PRO LEU LEU ALA SER SER LEU PRO LEU ALA ALA ARG SEQRES 5 B 184 TYR LEU GLN LEU ASP ALA ALA ARG LEU VAL ARG CYS ASN SEQRES 6 B 184 ALA HIS GLY GLU PRO ARG ASN TYR LEU ASN THR LEU SER SEQRES 7 B 184 THR ALA LEU ASN ILE LEU GLU LYS TYR GLY ARG ASN LEU SEQRES 8 B 184 LEU SER PRO GLN ARG PRO ARG TYR TRP ARG GLY VAL LYS SEQRES 9 B 184 PHE ASN ASN PRO VAL PHE ARG SER THR VAL ASP ALA VAL SEQRES 10 B 184 GLN GLY GLY ARG ASP VAL LEU ARG LEU TYR GLY TYR THR SEQRES 11 B 184 GLU GLU GLN PRO ASP GLY LEU SER PHE PRO GLU GLY GLN SEQRES 12 B 184 GLU GLU PRO ASP GLU HIS GLN VAL ALA THR VAL THR LEU SEQRES 13 B 184 GLU VAL LEU LEU LEU ARG THR GLU LEU SER LEU LEU LEU SEQRES 14 B 184 GLN ASN THR HIS PRO ARG GLN GLN ALA LEU GLU GLN LEU SEQRES 15 B 184 LEU GLU SEQRES 1 C 17 ASP PRO ALA ILE VAL GLN CYS ALA TRP ALA ALA LEU TYR SEQRES 2 C 17 CYS ASP MET GLN SEQRES 1 D 17 ASP PRO ALA ILE VAL GLN CYS ALA TRP ALA ALA LEU TYR SEQRES 2 D 17 CYS ASP MET GLN HET NH2 C 101 1 HET WHL C 102 14 HET NH2 D 101 1 HET WHL D 102 14 HETNAM NH2 AMINO GROUP HETNAM WHL N,N'-(1,4-PHENYLENE)DIACETAMIDE FORMUL 5 NH2 2(H2 N) FORMUL 6 WHL 2(C10 H12 N2 O2) FORMUL 9 HOH *26(H2 O) HELIX 1 AA1 GLY A 3 ASP A 24 1 22 HELIX 2 AA2 SER A 30 ALA A 39 1 10 HELIX 3 AA3 PRO A 43 TYR A 48 1 6 HELIX 4 AA4 ASP A 52 CYS A 59 1 8 HELIX 5 AA5 GLU A 64 SER A 88 1 25 HELIX 6 AA6 ASN A 102 THR A 108 1 7 HELIX 7 AA7 VAL A 109 VAL A 112 5 4 HELIX 8 AA8 GLY A 114 GLY A 123 1 10 HELIX 9 AA9 ASP A 142 GLN A 165 1 24 HELIX 10 AB1 ARG A 170 GLU A 175 1 6 HELIX 11 AB2 GLU B 4 ASP B 24 1 21 HELIX 12 AB3 SER B 30 ALA B 39 1 10 HELIX 13 AB4 ASP B 52 CYS B 59 1 8 HELIX 14 AB5 GLU B 64 LEU B 87 1 24 HELIX 15 AB6 ASN B 102 SER B 107 1 6 HELIX 16 AB7 THR B 108 VAL B 112 5 5 HELIX 17 AB8 GLY B 114 GLY B 123 1 10 HELIX 18 AB9 ASP B 142 GLN B 165 1 24 HELIX 19 AC1 PRO C 2 MET C 16 1 15 HELIX 20 AC2 PRO D 2 MET D 16 1 15 SHEET 1 AA1 3 GLY A 97 LYS A 99 0 SHEET 2 AA1 3 GLY A 131 SER A 133 -1 O LEU A 132 N VAL A 98 SHEET 3 AA1 3 GLU A 126 GLU A 127 -1 N GLU A 126 O SER A 133 SHEET 1 AA2 3 GLY B 97 VAL B 98 0 SHEET 2 AA2 3 LEU B 132 SER B 133 -1 O LEU B 132 N VAL B 98 SHEET 3 AA2 3 GLU B 126 GLU B 127 -1 N GLU B 126 O SER B 133 SSBOND 1 CYS A 59 CYS A 59 1555 6545 2.04 LINK SG CYS C 7 CK WHL C 102 1555 1555 1.86 LINK SG CYS C 14 CH WHL C 102 1555 1555 1.84 LINK C GLN C 17 N NH2 C 101 1555 1555 1.43 LINK SG CYS D 7 CK WHL D 102 1555 1555 1.86 LINK SG CYS D 14 CH WHL D 102 1555 1555 1.87 LINK C GLN D 17 N NH2 D 101 1555 1555 1.43 CRYST1 95.370 95.370 93.150 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010485 0.006054 0.000000 0.00000 SCALE2 0.000000 0.012108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010735 0.00000