data_7UZ0 # _entry.id 7UZ0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7UZ0 pdb_00007uz0 10.2210/pdb7uz0/pdb WWPDB D_1000264991 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7UZ0 _pdbx_database_status.recvd_initial_deposition_date 2022-05-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Price, I.R.' 1 0000-0002-9596-1036 'Grigg, J.C.' 2 0000-0002-5627-273X 'Ke, A.' 3 0000-0001-5957-7822 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Crystals _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2073-4352 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 694 _citation.page_last ? _citation.title ;tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/cryst12050694 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grigg, J.C.' 1 ? primary 'Price, I.R.' 2 ? primary 'Ke, A.' 3 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7UZ0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.168 _cell.length_a_esd ? _cell.length_b 56.695 _cell.length_b_esd ? _cell.length_c 268.908 _cell.length_c_esd ? _cell.volume 703865.281 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7UZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'AntiT-tRNA flip UCCA' 28330.717 1 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 19 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)CGGAAGUAGUUCAGUGGUAGAACACCUACUGGCCCGAAAGGGUGGAACCCCAGUAGGGGGUCGCGGGUUCGAGUC CCGUCUUCCGC ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGGAAGUAGUUCAGUGGUAGAACACCUACUGGCCCGAAAGGGUGGAACCCCAGUAGGGGGUCGCGGGUUCGAGUCCCGU CUUCCGC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 G n 1 22 A n 1 23 A n 1 24 C n 1 25 A n 1 26 C n 1 27 C n 1 28 U n 1 29 A n 1 30 C n 1 31 U n 1 32 G n 1 33 G n 1 34 C n 1 35 C n 1 36 C n 1 37 G n 1 38 A n 1 39 A n 1 40 A n 1 41 G n 1 42 G n 1 43 G n 1 44 U n 1 45 G n 1 46 G n 1 47 A n 1 48 A n 1 49 C n 1 50 C n 1 51 C n 1 52 C n 1 53 A n 1 54 G n 1 55 U n 1 56 A n 1 57 G n 1 58 G n 1 59 G n 1 60 G n 1 61 G n 1 62 U n 1 63 C n 1 64 G n 1 65 C n 1 66 G n 1 67 G n 1 68 G n 1 69 U n 1 70 U n 1 71 C n 1 72 G n 1 73 A n 1 74 G n 1 75 U n 1 76 C n 1 77 C n 1 78 C n 1 79 G n 1 80 U n 1 81 C n 1 82 U n 1 83 U n 1 84 C n 1 85 C n 1 86 G n 1 87 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 87 _pdbx_entity_src_syn.organism_scientific 'Geobacillus kaustophilus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1462 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7UZ0 _struct_ref.pdbx_db_accession 7UZ0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7UZ0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 87 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7UZ0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 87 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 87 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7UZ0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;10% MPD, 40 mM sodium cacodylate, pH 7, 12 mM spermine hydrochloride, 40 mM lithium chloride, 80 mM strontium chloride, 20 mM magnesium chloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 78.18 _reflns.entry_id 7UZ0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.03 _reflns.d_resolution_low 33.61 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13078 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.22 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.1 _reflns.pdbx_Rmerge_I_obs 0.1308 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.90 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.1413 _reflns.pdbx_Rpim_I_all 0.0528 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 3.03 _reflns_shell.d_res_low 3.141 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.59 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 688 _reflns_shell.percent_possible_all 98.55 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.135 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.22 _reflns_shell.pdbx_Rpim_I_all 0.4463 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.991 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 100.69 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7UZ0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.03 _refine.ls_d_res_low 33.61 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13078 _refine.ls_number_reflns_R_free 609 _refine.ls_number_reflns_R_work 12469 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.17 _refine.ls_percent_reflns_R_free 4.66 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2478 _refine.ls_R_factor_R_free 0.2767 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2464 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 4MGN' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.5692 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5995 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.03 _refine_hist.d_res_low 33.61 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1900 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1876 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0048 ? 2097 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9172 ? 3269 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0485 ? 434 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0058 ? 87 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.1284 ? 1043 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.03 3.34 . . 142 3130 98.91 . . . 0.4877 . 0.3456 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.34 3.82 . . 156 3075 98.87 . . . 0.3226 . 0.2913 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.82 4.81 . . 160 3113 99.67 . . . 0.2689 . 0.2567 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.81 33.61 . . 151 3151 99.25 . . . 0.2274 . 0.2022 . . . . . . . . . . . # _struct.entry_id 7UZ0 _struct.title 'AntiT-tRNA flip UCCA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7UZ0 _struct_keywords.text 'RNA, scaffold, AntiT, T-box, tRNA fusion' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 3 ? V N N 3 ? W N N 3 ? X N N 3 ? Y N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A C 2 P ? ? A GTP 1 A C 2 1_555 ? ? ? ? ? ? ? 1.570 ? ? metalc1 metalc ? ? A A 9 OP1 ? ? ? 1_555 E SR . SR ? ? A A 9 A SR 104 1_555 ? ? ? ? ? ? ? 2.873 ? ? metalc2 metalc ? ? A U 12 OP2 ? ? ? 1_555 D SR . SR ? ? A U 12 A SR 103 1_555 ? ? ? ? ? ? ? 2.598 ? ? metalc3 metalc ? ? A G 21 OP2 ? ? ? 1_555 S SR . SR ? ? A G 21 A SR 118 1_555 ? ? ? ? ? ? ? 2.476 ? ? metalc4 metalc ? ? A G 37 O6 ? ? ? 1_555 Q SR . SR ? ? A G 37 A SR 116 1_555 ? ? ? ? ? ? ? 2.874 ? ? metalc5 metalc ? ? A G 37 N7 ? ? ? 1_555 R SR . SR ? ? A G 37 A SR 117 1_555 ? ? ? ? ? ? ? 2.911 ? ? metalc6 metalc ? ? A U 44 OP1 ? ? ? 1_555 J SR . SR ? ? A U 44 A SR 109 1_555 ? ? ? ? ? ? ? 2.943 ? ? metalc7 metalc ? ? A U 55 O2 ? ? ? 1_555 W MG . MG ? ? A U 55 A MG 122 1_555 ? ? ? ? ? ? ? 2.983 ? ? metalc8 metalc ? ? A G 60 N7 ? ? ? 1_555 M SR . SR ? ? A G 60 A SR 112 1_555 ? ? ? ? ? ? ? 2.863 ? ? metalc9 metalc ? ? A G 60 O6 ? ? ? 1_555 M SR . SR ? ? A G 60 A SR 112 1_555 ? ? ? ? ? ? ? 2.649 ? ? metalc10 metalc ? ? A U 70 O4 ? ? ? 1_555 H SR . SR ? ? A U 70 A SR 107 1_555 ? ? ? ? ? ? ? 2.691 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 87 N3 ? ? A GTP 1 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 87 O2 ? ? A GTP 1 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 87 N4 ? ? A GTP 1 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 2 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 2 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 2 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 3 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 3 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 3 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 4 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 4 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 4 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 83 N3 ? ? A A 5 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 83 O4 ? ? A A 5 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 82 N3 ? ? A A 6 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 82 O4 ? ? A A 6 A U 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 81 N3 ? ? A G 7 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 81 O2 ? ? A G 7 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 81 N4 ? ? A G 7 A C 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 22 N7 ? ? A A 9 A A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 22 N6 ? ? A A 9 A A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 N3 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 24 O2 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 24 N4 ? ? A G 10 A C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 11 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 11 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 12 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 12 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 21 N1 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 21 O6 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N2 ? ? A C 13 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 63 O2 ? ? A G 15 A C 63 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 63 N3 ? ? A G 15 A C 63 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 70 O2 ? ? A G 17 A U 70 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 71 N3 ? ? A G 18 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 71 O2 ? ? A G 18 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 71 N4 ? ? A G 18 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 21 N7 ? ? ? 1_555 A G 61 N2 ? ? A G 21 A G 61 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 25 N1 ? ? ? 1_555 A G 59 N2 ? ? A A 25 A G 59 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog42 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 58 N2 ? ? A C 26 A G 58 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog43 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 57 N1 ? ? A C 27 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 57 O6 ? ? A C 27 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 57 N2 ? ? A C 27 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 28 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 28 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 28 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 28 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 55 N3 ? ? A A 29 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 55 O4 ? ? A A 29 A U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 31 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 31 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 34 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 34 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 34 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 35 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 35 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 35 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 36 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 36 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 36 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 36 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 36 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 36 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 37 N2 ? ? ? 1_555 A A 40 N7 ? ? A G 37 A A 40 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A G 64 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 64 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A G 64 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 64 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 65 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 65 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 65 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 66 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 66 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 66 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 66 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 66 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 66 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 67 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 77 O2 ? ? A G 67 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 77 N4 ? ? A G 67 A C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 76 N3 ? ? A G 68 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 76 O2 ? ? A G 68 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 76 N4 ? ? A G 68 A C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 69 N3 ? ? ? 1_555 A A 73 N7 ? ? A U 69 A A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog86 hydrog ? ? A U 69 O2 ? ? ? 1_555 A A 73 N6 ? ? A U 69 A A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7UZ0 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021660 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017638 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003719 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 2.59044 63.03566 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? 11.43723 ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? 9.05267 ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 3.49406 27.47979 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? SR ? ? 32.18652 5.63919 2.35430 57.90393 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n A 1 36 C 36 36 36 C C A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 A 39 39 39 A A A . n A 1 40 A 40 40 40 A A A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 U 44 44 44 U U A . n A 1 45 G 45 45 45 G G A . n A 1 46 G 46 46 46 G G A . n A 1 47 A 47 47 47 A A A . n A 1 48 A 48 48 48 A A A . n A 1 49 C 49 49 49 C C A . n A 1 50 C 50 50 50 C C A . n A 1 51 C 51 51 51 C C A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 G 54 54 54 G G A . n A 1 55 U 55 55 55 U U A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 G 58 58 58 G G A . n A 1 59 G 59 59 59 G G A . n A 1 60 G 60 60 60 G G A . n A 1 61 G 61 61 61 G G A . n A 1 62 U 62 62 62 U U A . n A 1 63 C 63 63 63 C C A . n A 1 64 G 64 64 64 G G A . n A 1 65 C 65 65 65 C C A . n A 1 66 G 66 66 66 G G A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 U 70 70 70 U U A . n A 1 71 C 71 71 71 C C A . n A 1 72 G 72 72 72 G G A . n A 1 73 A 73 73 73 A A A . n A 1 74 G 74 74 74 G G A . n A 1 75 U 75 75 75 U U A . n A 1 76 C 76 76 76 C C A . n A 1 77 C 77 77 77 C C A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 C 81 81 81 C C A . n A 1 82 U 82 82 82 U U A . n A 1 83 U 83 83 83 U U A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 G 86 86 86 G G A . n A 1 87 C 87 87 87 C C A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email ak425@cornell.edu _pdbx_contact_author.name_first Ailong _pdbx_contact_author.name_last Ke _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5957-7822 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SR 1 101 1 SR SR A . C 2 SR 1 102 2 SR SR A . D 2 SR 1 103 3 SR SR A . E 2 SR 1 104 4 SR SR A . F 2 SR 1 105 5 SR SR A . G 2 SR 1 106 6 SR SR A . H 2 SR 1 107 7 SR SR A . I 2 SR 1 108 8 SR SR A . J 2 SR 1 109 9 SR SR A . K 2 SR 1 110 10 SR SR A . L 2 SR 1 111 11 SR SR A . M 2 SR 1 112 12 SR SR A . N 2 SR 1 113 13 SR SR A . O 2 SR 1 114 14 SR SR A . P 2 SR 1 115 15 SR SR A . Q 2 SR 1 116 16 SR SR A . R 2 SR 1 117 17 SR SR A . S 2 SR 1 118 18 SR SR A . T 2 SR 1 119 19 SR SR A . U 3 MG 1 120 20 MG MG A . V 3 MG 1 121 21 MG MG A . W 3 MG 1 122 22 MG MG A . X 3 MG 1 123 23 MG MG A . Y 3 MG 1 124 24 MG MG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id N7 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id G _pdbx_struct_conn_angle.ptnr1_label_seq_id 60 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id G _pdbx_struct_conn_angle.ptnr1_auth_seq_id 60 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id SR _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id M _pdbx_struct_conn_angle.ptnr2_label_comp_id SR _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id SR _pdbx_struct_conn_angle.ptnr2_auth_seq_id 112 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O6 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id G _pdbx_struct_conn_angle.ptnr3_label_seq_id 60 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id G _pdbx_struct_conn_angle.ptnr3_auth_seq_id 60 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 67.4 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-08 2 'Structure model' 1 1 2023-06-28 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7UZ0 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GTP _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.49 _pdbx_validate_rmsd_angle.angle_target_value 110.50 _pdbx_validate_rmsd_angle.angle_deviation 13.99 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 MG MG MG N N 159 SR SR SR N N 160 U OP3 O N N 161 U P P N N 162 U OP1 O N N 163 U OP2 O N N 164 U "O5'" O N N 165 U "C5'" C N N 166 U "C4'" C N R 167 U "O4'" O N N 168 U "C3'" C N S 169 U "O3'" O N N 170 U "C2'" C N R 171 U "O2'" O N N 172 U "C1'" C N R 173 U N1 N N N 174 U C2 C N N 175 U O2 O N N 176 U N3 N N N 177 U C4 C N N 178 U O4 O N N 179 U C5 C N N 180 U C6 C N N 181 U HOP3 H N N 182 U HOP2 H N N 183 U "H5'" H N N 184 U "H5''" H N N 185 U "H4'" H N N 186 U "H3'" H N N 187 U "HO3'" H N N 188 U "H2'" H N N 189 U "HO2'" H N N 190 U "H1'" H N N 191 U H3 H N N 192 U H5 H N N 193 U H6 H N N 194 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 U OP3 P sing N N 166 U OP3 HOP3 sing N N 167 U P OP1 doub N N 168 U P OP2 sing N N 169 U P "O5'" sing N N 170 U OP2 HOP2 sing N N 171 U "O5'" "C5'" sing N N 172 U "C5'" "C4'" sing N N 173 U "C5'" "H5'" sing N N 174 U "C5'" "H5''" sing N N 175 U "C4'" "O4'" sing N N 176 U "C4'" "C3'" sing N N 177 U "C4'" "H4'" sing N N 178 U "O4'" "C1'" sing N N 179 U "C3'" "O3'" sing N N 180 U "C3'" "C2'" sing N N 181 U "C3'" "H3'" sing N N 182 U "O3'" "HO3'" sing N N 183 U "C2'" "O2'" sing N N 184 U "C2'" "C1'" sing N N 185 U "C2'" "H2'" sing N N 186 U "O2'" "HO2'" sing N N 187 U "C1'" N1 sing N N 188 U "C1'" "H1'" sing N N 189 U N1 C2 sing N N 190 U N1 C6 sing N N 191 U C2 O2 doub N N 192 U C2 N3 sing N N 193 U N3 C4 sing N N 194 U N3 H3 sing N N 195 U C4 O4 doub N N 196 U C4 C5 sing N N 197 U C5 C6 doub N N 198 U C5 H5 sing N N 199 U C6 H6 sing N N 200 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7UZ0 'double helix' 7UZ0 'a-form double helix' 7UZ0 'parallel strands' 7UZ0 tetraloop 7UZ0 'bulge loop' 7UZ0 'mismatched base pair' 7UZ0 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A C 87 1_555 -0.820 -0.099 -0.020 -4.437 7.561 -5.559 1 A_GTP1:C87_A A 1 ? A 87 ? 19 1 1 A C 2 1_555 A G 86 1_555 0.076 0.119 0.035 0.622 1.119 0.885 2 A_C2:G86_A A 2 ? A 86 ? 19 1 1 A G 3 1_555 A C 85 1_555 -0.027 0.024 0.240 2.451 0.100 -3.155 3 A_G3:C85_A A 3 ? A 85 ? 19 1 1 A G 4 1_555 A C 84 1_555 -0.163 -0.062 0.017 -2.703 4.765 0.575 4 A_G4:C84_A A 4 ? A 84 ? 19 1 1 A A 5 1_555 A U 83 1_555 0.114 -0.123 0.420 -0.801 3.827 0.877 5 A_A5:U83_A A 5 ? A 83 ? 20 1 1 A A 6 1_555 A U 82 1_555 0.376 -0.073 0.492 -3.060 4.298 0.940 6 A_A6:U82_A A 6 ? A 82 ? 20 1 1 A G 7 1_555 A C 81 1_555 -0.141 -0.121 0.192 4.983 4.801 0.113 7 A_G7:C81_A A 7 ? A 81 ? 19 1 1 A G 64 1_555 A U 80 1_555 -2.073 -0.319 -0.109 1.724 2.169 1.312 8 A_G64:U80_A A 64 ? A 80 ? 28 1 1 A C 65 1_555 A G 79 1_555 0.207 0.026 0.101 3.450 -1.900 0.730 9 A_C65:G79_A A 65 ? A 79 ? 19 1 1 A G 66 1_555 A C 78 1_555 -0.155 -0.104 0.109 0.211 2.782 0.255 10 A_G66:C78_A A 66 ? A 78 ? 19 1 1 A G 67 1_555 A C 77 1_555 -0.090 -0.135 0.353 0.195 0.785 0.401 11 A_G67:C77_A A 67 ? A 77 ? 19 1 1 A G 68 1_555 A C 76 1_555 0.032 0.022 0.227 -5.820 6.540 0.573 12 A_G68:C76_A A 68 ? A 76 ? 19 1 1 A U 69 1_555 A A 73 1_555 4.381 -1.965 0.249 6.613 1.426 -99.321 13 A_U69:A73_A A 69 ? A 73 ? 24 4 1 A U 70 1_555 A G 17 1_555 1.097 -5.574 0.107 17.020 -4.368 -98.263 14 A_U70:G17_A A 70 ? A 17 ? ? 6 1 A C 51 1_555 A G 33 1_555 0.136 -0.268 0.128 8.708 -9.700 -2.385 15 A_C51:G33_A A 51 ? A 33 ? 19 1 1 A C 52 1_555 A G 32 1_555 0.126 -0.241 0.051 3.682 -10.328 -1.831 16 A_C52:G32_A A 52 ? A 32 ? 19 1 1 A A 53 1_555 A U 31 1_555 0.351 -0.150 0.261 -1.120 -9.429 0.547 17 A_A53:U31_A A 53 ? A 31 ? 20 1 1 A G 54 1_555 A C 30 1_555 -0.131 -0.203 0.331 0.128 -10.210 -0.381 18 A_G54:C30_A A 54 ? A 30 ? 19 1 1 A U 55 1_555 A A 29 1_555 -0.018 -0.120 0.535 -3.387 -7.527 -0.996 19 A_U55:A29_A A 55 ? A 29 ? 20 1 1 A A 56 1_555 A U 28 1_555 0.245 -0.166 0.295 2.900 -8.324 -3.362 20 A_A56:U28_A A 56 ? A 28 ? 20 1 1 A G 57 1_555 A C 27 1_555 -0.101 -0.217 0.288 0.342 -8.169 -0.584 21 A_G57:C27_A A 57 ? A 27 ? 19 1 1 A G 58 1_555 A C 26 1_555 1.520 0.633 0.072 -18.056 -18.799 -1.017 22 A_G58:C26_A A 58 ? A 26 ? ? 1 1 A G 59 1_555 A A 25 1_555 1.961 2.067 0.134 -26.531 -6.691 -14.901 23 A_G59:A25_A A 59 ? A 25 ? ? ? 1 A G 10 1_555 A C 24 1_555 -0.202 -0.116 -0.556 -11.136 0.510 -1.193 24 A_G10:C24_A A 10 ? A 24 ? 19 1 1 A U 11 1_555 A A 23 1_555 0.001 -0.024 0.065 -8.837 4.647 -0.899 25 A_U11:A23_A A 11 ? A 23 ? 20 1 1 A U 12 1_555 A A 22 1_555 -0.147 0.101 0.011 -1.492 5.055 -10.211 26 A_U12:A22_A A 12 ? A 22 ? 20 1 1 A C 13 1_555 A G 21 1_555 0.138 -0.044 -0.420 5.557 -1.093 -0.818 27 A_C13:G21_A A 13 ? A 21 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.140 -1.793 0.787 0.394 12.861 -93.976 28 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 63 1_555 -0.064 3.815 0.022 -0.964 6.897 162.209 29 A_G15:C63_A A 15 ? A 63 ? 22 2 1 A G 18 1_555 A C 71 1_555 0.520 0.133 -0.099 -11.524 -1.876 -6.515 30 A_G18:C71_A A 18 ? A 71 ? 19 1 1 A C 34 1_555 A G 43 1_555 0.110 -0.026 0.191 1.741 -2.150 3.211 31 A_C34:G43_A A 34 ? A 43 ? 19 1 1 A C 35 1_555 A G 42 1_555 0.076 -0.158 -0.077 -5.970 1.444 1.399 32 A_C35:G42_A A 35 ? A 42 ? 19 1 1 A C 36 1_555 A G 41 1_555 -0.120 -0.174 0.176 -3.513 13.486 -0.961 33 A_C36:G41_A A 36 ? A 41 ? 19 1 1 A G 37 1_555 A A 40 1_555 6.975 -4.782 1.087 18.068 4.908 -16.972 34 A_G37:A40_A A 37 ? A 40 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A C 87 1_555 A C 2 1_555 A G 86 1_555 0.089 -1.625 3.510 -3.095 0.184 40.608 -2.357 -0.495 3.488 0.264 4.452 40.722 1 AA_GTP1C2:G86C87_AA A 1 ? A 87 ? A 2 ? A 86 ? 1 A C 2 1_555 A G 86 1_555 A G 3 1_555 A C 85 1_555 -0.010 -1.831 3.058 -0.929 6.504 27.608 -5.043 -0.166 2.567 13.390 1.912 28.364 2 AA_C2G3:C85G86_AA A 2 ? A 86 ? A 3 ? A 85 ? 1 A G 3 1_555 A C 85 1_555 A G 4 1_555 A C 84 1_555 0.015 -1.866 3.238 -0.025 9.075 32.514 -4.565 -0.030 2.637 15.828 0.044 33.724 3 AA_G3G4:C84C85_AA A 3 ? A 85 ? A 4 ? A 84 ? 1 A G 4 1_555 A C 84 1_555 A A 5 1_555 A U 83 1_555 0.135 -1.819 3.058 -1.162 7.604 34.151 -4.030 -0.379 2.600 12.748 1.949 34.982 4 AA_G4A5:U83C84_AA A 4 ? A 84 ? A 5 ? A 83 ? 1 A A 5 1_555 A U 83 1_555 A A 6 1_555 A U 82 1_555 0.407 -2.044 3.171 0.034 7.179 31.420 -4.838 -0.728 2.651 13.044 -0.063 32.209 5 AA_A5A6:U82U83_AA A 5 ? A 83 ? A 6 ? A 82 ? 1 A A 6 1_555 A U 82 1_555 A G 7 1_555 A C 81 1_555 -0.065 -1.895 2.927 4.539 5.369 28.690 -4.680 0.940 2.499 10.634 -8.991 29.521 6 AA_A6G7:C81U82_AA A 6 ? A 82 ? A 7 ? A 81 ? 1 A G 7 1_555 A C 81 1_555 A G 64 1_555 A U 80 1_555 -0.118 -2.311 3.131 1.349 9.689 31.498 -5.485 0.405 2.330 17.332 -2.413 32.946 7 AA_G7G64:U80C81_AA A 7 ? A 81 ? A 64 ? A 80 ? 1 A G 64 1_555 A U 80 1_555 A C 65 1_555 A G 79 1_555 -0.461 -1.658 3.221 -1.793 1.708 39.671 -2.633 0.474 3.167 2.514 2.639 39.745 8 AA_G64C65:G79U80_AA A 64 ? A 80 ? A 65 ? A 79 ? 1 A C 65 1_555 A G 79 1_555 A G 66 1_555 A C 78 1_555 -0.238 -1.813 3.267 -1.472 6.366 28.939 -4.808 0.172 2.820 12.537 2.899 29.652 9 AA_C65G66:C78G79_AA A 65 ? A 79 ? A 66 ? A 78 ? 1 A G 66 1_555 A C 78 1_555 A G 67 1_555 A C 77 1_555 0.201 -1.920 3.095 -2.188 4.276 31.153 -4.256 -0.740 2.793 7.903 4.043 31.512 10 AA_G66G67:C77C78_AA A 66 ? A 78 ? A 67 ? A 77 ? 1 A G 67 1_555 A C 77 1_555 A G 68 1_555 A C 76 1_555 0.310 -2.229 3.204 0.687 3.373 35.290 -4.130 -0.413 2.990 5.548 -1.130 35.453 11 AA_G67G68:C76C77_AA A 67 ? A 77 ? A 68 ? A 76 ? 1 A G 68 1_555 A C 76 1_555 A U 69 1_555 A A 73 1_555 -2.371 -2.127 3.139 2.826 4.602 87.411 -1.630 1.771 2.985 3.327 -2.044 87.544 12 AA_G68U69:A73C76_AA A 68 ? A 76 ? A 69 ? A 73 ? 1 A U 69 1_555 A A 73 1_555 A U 70 1_555 A G 17 1_555 1.938 -1.584 3.385 9.195 -1.626 40.635 -2.038 -1.648 3.775 -2.304 -13.033 41.649 13 AA_U69U70:G17A73_AA A 69 ? A 73 ? A 70 ? A 17 ? 1 A C 51 1_555 A G 33 1_555 A C 52 1_555 A G 32 1_555 0.551 -1.856 3.342 1.971 4.092 35.211 -3.640 -0.617 3.139 6.730 -3.241 35.494 14 AA_C51C52:G32G33_AA A 51 ? A 33 ? A 52 ? A 32 ? 1 A C 52 1_555 A G 32 1_555 A A 53 1_555 A U 31 1_555 -0.428 -1.928 3.249 -1.192 12.704 25.695 -6.379 0.632 2.098 26.579 2.494 28.641 15 AA_C52A53:U31G32_AA A 52 ? A 32 ? A 53 ? A 31 ? 1 A A 53 1_555 A U 31 1_555 A G 54 1_555 A C 30 1_555 0.001 -1.588 3.163 0.506 6.786 30.855 -4.071 0.085 2.760 12.563 -0.936 31.579 16 AA_A53G54:C30U31_AA A 53 ? A 31 ? A 54 ? A 30 ? 1 A G 54 1_555 A C 30 1_555 A U 55 1_555 A A 29 1_555 0.098 -1.698 3.281 1.218 7.218 33.278 -3.993 0.017 2.863 12.417 -2.095 34.052 17 AA_G54U55:A29C30_AA A 54 ? A 30 ? A 55 ? A 29 ? 1 A U 55 1_555 A A 29 1_555 A A 56 1_555 A U 28 1_555 0.210 -1.425 2.909 3.394 9.486 31.722 -3.811 0.105 2.404 16.830 -6.022 33.244 18 AA_U55A56:U28A29_AA A 55 ? A 29 ? A 56 ? A 28 ? 1 A A 56 1_555 A U 28 1_555 A G 57 1_555 A C 27 1_555 0.406 -2.034 3.291 0.019 3.915 28.792 -4.884 -0.806 2.995 7.827 -0.038 29.051 19 AA_A56G57:C27U28_AA A 56 ? A 28 ? A 57 ? A 27 ? 1 A G 57 1_555 A C 27 1_555 A G 58 1_555 A C 26 1_555 0.135 -1.849 3.545 6.345 7.952 45.117 -3.064 0.392 3.183 10.210 -8.148 46.191 20 AA_G57G58:C26C27_AA A 57 ? A 27 ? A 58 ? A 26 ? 1 A G 58 1_555 A C 26 1_555 A G 59 1_555 A A 25 1_555 -1.120 -1.525 3.379 4.109 -1.020 36.493 -2.278 2.350 3.278 -1.622 -6.534 36.729 21 AA_G58G59:A25C26_AA A 58 ? A 26 ? A 59 ? A 25 ? 1 A G 59 1_555 A A 25 1_555 A G 10 1_555 A C 24 1_555 -3.273 -3.217 3.062 21.360 8.512 55.301 -3.543 4.055 1.357 8.761 -21.986 59.541 22 AA_G59G10:C24A25_AA A 59 ? A 25 ? A 10 ? A 24 ? 1 A G 10 1_555 A C 24 1_555 A U 11 1_555 A A 23 1_555 -0.486 -1.706 3.245 -3.851 3.539 33.682 -3.459 0.233 3.090 6.062 6.596 34.074 23 AA_G10U11:A23C24_AA A 10 ? A 24 ? A 11 ? A 23 ? 1 A U 11 1_555 A A 23 1_555 A U 12 1_555 A A 22 1_555 -0.485 -1.472 3.076 3.184 11.224 33.377 -3.863 1.208 2.416 18.840 -5.345 35.303 24 AA_U11U12:A22A23_AA A 11 ? A 23 ? A 12 ? A 22 ? 1 A U 12 1_555 A A 22 1_555 A C 13 1_555 A G 21 1_555 1.674 -1.819 3.115 5.088 3.639 29.499 -4.213 -2.220 3.111 7.047 -9.852 30.140 25 AA_U12C13:G21A22_AA A 12 ? A 22 ? A 13 ? A 21 ? 1 A C 13 1_555 A G 21 1_555 A A 14 1_555 A U 8 1_555 -1.197 -0.299 3.479 0.929 -6.520 61.531 0.032 1.211 3.475 -6.354 -0.906 61.848 26 AA_C13A14:U8G21_AA A 13 ? A 21 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 63 1_555 2.012 -3.110 3.200 -3.712 12.742 -66.967 2.259 1.646 3.763 -11.433 -3.330 -68.119 27 AA_A14G15:C63U8_AA A 14 ? A 8 ? A 15 ? A 63 ? 1 A C 34 1_555 A G 43 1_555 A C 35 1_555 A G 42 1_555 -0.552 -2.325 3.276 0.830 5.508 34.393 -4.676 1.041 2.867 9.240 -1.392 34.828 28 AA_C34C35:G42G43_AA A 34 ? A 43 ? A 35 ? A 42 ? 1 A C 35 1_555 A G 42 1_555 A C 36 1_555 A G 41 1_555 -0.477 -1.959 3.319 -1.949 6.846 24.489 -6.284 0.556 2.709 15.720 4.476 25.487 29 AA_C35C36:G41G42_AA A 35 ? A 42 ? A 36 ? A 41 ? 1 A C 36 1_555 A G 41 1_555 A G 37 1_555 A A 40 1_555 -1.697 -1.082 2.737 -1.892 10.186 53.267 -1.698 1.768 2.560 11.241 2.088 54.192 30 AA_C36G37:A40G41_AA A 36 ? A 41 ? A 37 ? A 40 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM116632 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM118174 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 'MAGNESIUM ION' MG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4MGN _pdbx_initial_refinement_model.details 'PDB entry 4MGN' # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'C 2 2 21' _space_group.name_Hall 'C 2c 2' _space_group.IT_number 20 _space_group.crystal_system orthorhombic _space_group.id 1 #